RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 TXNDC16Q9P2K2 825 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 SLC7A8Q9UHI5 535 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 TSR3Q9UJK0 312 aaKnown RBP8.95□□□□□ -0.98
USP40-203ENST00000427112 NUDT5Q9UKK9 219 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 FNDC3AQ9Y2H6 1198 aaKnown RBP8.95□□□□□ -0.98
USP40-203ENST00000427112 TPP1O14773 563 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 PLSCR1O15162 318 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 ADCY3O60266 1144 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 STAG3L1P0CL83 205 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 ALADP13716 330 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 PTPRAP18433 802 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 CYP3A5P20815 502 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 SLC8A3P57103 927 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 MRPS5P82675 430 aaKnown RBP8.95□□□□□ -0.98
USP40-203ENST00000427112 ASPHQ12797 758 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 SLC45A4Q5BKX6 768 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 FBXO48Q5FWF7 155 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 KCNT2Q6UVM3 1135 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 ZBTB8OSQ8IWT0 167 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 DEFB107AQ8IZN7 70 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 DNAAF3Q8N9W5 541 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 PPP4R1Q8TF05 950 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 ZNF333Q96JL9 665 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 SLC45A3Q96JT2 553 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 FGD4Q96M96 766 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 OMDQ99983 421 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 SNRNP25Q9BV90 132 aaKnown RBP8.95□□□□□ -0.98
USP40-203ENST00000427112 ELP3Q9H9T3 547 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 KRT82Q9NSB4 513 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 SHOC2Q9UQ13 582 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 TRUB2O95900 331 aaKnown RBP8.95□□□□□ -0.98
USP40-203ENST00000427112 SPATA31D3P0C874 917 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 GOT1P17174 413 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 PEX2P28328 305 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 SLC34A1Q06495 639 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 SLC10A2Q12908 348 aaPredicted RBP8.95□□□□□ -0.98
USP40-203ENST00000427112 ADGRD1Q6QNK2 874 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 ATG14Q6ZNE5 492 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 SPATA31D4Q6ZUB0 917 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 C10orf107Q8IVU9 208 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 ULK2Q8IYT8 1036 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 SLC4A11Q8NBS3 891 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 SNRNP27Q8WVK2 155 aaKnown RBP8.95□□□□□ -0.98
USP40-203ENST00000427112 EXT2Q93063 718 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 APOPT1Q96IL0 206 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 MRPL45Q9BRJ2 306 aaKnown RBP8.95□□□□□ -0.98
USP40-203ENST00000427112 NRBP2Q9NSY0 501 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 RHBDL2Q9NX52 303 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 SIX4Q9UIU6 781 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 SIPA1L1O43166 1804 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 C3orf70A6NLC5 250 aaPredicted RBP8.94□□□□□ -0.98
USP40-203ENST00000427112 KRT37O76014 449 aa8.94□□□□□ -0.98
USP40-203ENST00000427112 KRT7P08729 469 aa8.94□□□□□ -0.98
USP40-203ENST00000427112 SKIP12755 728 aa8.94□□□□□ -0.98
USP40-203ENST00000427112 ENO3P13929 434 aaPredicted RBP8.94□□□□□ -0.98
USP40-203ENST00000427112 TYK2P29597 1187 aa8.94□□□□□ -0.98
USP40-203ENST00000427112 IRF9Q00978 393 aa8.94□□□□□ -0.98
USP40-203ENST00000427112 TMED1Q13445 227 aa8.94□□□□□ -0.98
USP40-203ENST00000427112 SLFN12LQ6IEE8 588 aa8.94□□□□□ -0.98
USP40-203ENST00000427112 ZNF280DQ6N043 979 aa8.94□□□□□ -0.98
USP40-203ENST00000427112 DPY19L2Q6NUT2 758 aa8.94□□□□□ -0.98
USP40-203ENST00000427112 SDCCAG8Q86SQ7 713 aaPredicted RBP8.94□□□□□ -0.98
USP40-203ENST00000427112 PQLC3Q8N755 202 aa8.94□□□□□ -0.98
USP40-203ENST00000427112 CCNYL1Q8N7R7 359 aa8.94□□□□□ -0.98
USP40-203ENST00000427112 RNF169Q8NCN4 708 aa8.94□□□□□ -0.98
USP40-203ENST00000427112 ACVR1CQ8NER5 493 aa8.94□□□□□ -0.98
USP40-203ENST00000427112 PCDH19Q8TAB3 1148 aa8.94□□□□□ -0.98
USP40-203ENST00000427112 SLCO2A1Q92959 643 aa8.94□□□□□ -0.98
USP40-203ENST00000427112 AGAP2Q99490 1192 aa8.94□□□□□ -0.98
USP40-203ENST00000427112 SEMA6AQ9H2E6 1030 aa8.94□□□□□ -0.98
USP40-203ENST00000427112 OCEL1Q9H607 264 aa8.94□□□□□ -0.98
USP40-203ENST00000427112 NDE1Q9NXR1 346 aa8.94□□□□□ -0.98
USP40-203ENST00000427112 HEMK1Q9Y5R4 338 aaPredicted RBP8.94□□□□□ -0.98
USP40-203ENST00000427112 OGTO15294 1046 aa8.94□□□□□ -0.98
USP40-203ENST00000427112 PRPF4O43172 522 aaKnown RBP eCLIP8.94□□□□□ -0.98
USP40-203ENST00000427112 PHGDHO43175 533 aaKnown RBP8.94□□□□□ -0.98
USP40-203ENST00000427112 ITGAVP06756 1048 aa8.94□□□□□ -0.98
USP40-203ENST00000427112 HOXC6P09630 235 aa8.94□□□□□ -0.98
USP40-203ENST00000427112 RPL10P27635 214 aaKnown RBP8.94□□□□□ -0.98
USP40-203ENST00000427112 PLK1P53350 603 aa8.94□□□□□ -0.98
USP40-203ENST00000427112 YWHAEP62258 255 aaKnown RBP8.94□□□□□ -0.98
USP40-203ENST00000427112 BRSK2Q8IWQ3 736 aa8.94□□□□□ -0.98
USP40-203ENST00000427112 CCDC185Q8N715 623 aa8.94□□□□□ -0.98
USP40-203ENST00000427112 PLD5Q8N7P1 536 aa8.94□□□□□ -0.98
USP40-203ENST00000427112 MAB21L3Q8N8X9 362 aa8.94□□□□□ -0.98
USP40-203ENST00000427112 MAGEC3Q8TD91 643 aa8.94□□□□□ -0.98
USP40-203ENST00000427112 LENG1Q96BZ8 264 aaPredicted RBP8.94□□□□□ -0.98
USP40-203ENST00000427112 CELF6Q96J87 481 aaKnown RBP8.94□□□□□ -0.98
USP40-203ENST00000427112 SCYL1Q96KG9 808 aa8.94□□□□□ -0.98
USP40-203ENST00000427112 TEPSINQ96N21 525 aa8.94□□□□□ -0.98
USP40-203ENST00000427112 ACO2Q99798 780 aaKnown RBP8.94□□□□□ -0.98
USP40-203ENST00000427112 NTPCRQ9BSD7 190 aaKnown RBP8.94□□□□□ -0.98
USP40-203ENST00000427112 CDT1Q9H211 546 aa8.94□□□□□ -0.98
USP40-203ENST00000427112 FARP1Q9Y4F1 1045 aaPredicted RBP8.94□□□□□ -0.98
USP40-203ENST00000427112 CAPN8A6NHC0 703 aa8.94□□□□□ -0.98
USP40-203ENST00000427112 SPDYE16A6NNV3 312 aaPredicted RBP8.94□□□□□ -0.98
USP40-203ENST00000427112 SLC26A4O43511 780 aa8.94□□□□□ -0.98
USP40-203ENST00000427112 MSCO60682 206 aa8.94□□□□□ -0.98
USP40-203ENST00000427112 SNRPAP09012 282 aaKnown RBP8.94□□□□□ -0.98
USP40-203ENST00000427112 GPD1P21695 349 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms