RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 SLF1Q9BQI6 1058 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 GPATCH1Q9BRR8 931 aaKnown RBP2.8□□□□□ -1.96
MCF2-204ENST00000414978 OSBPL6Q9BZF3 934 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 PABPC3Q9H361 631 aaKnown RBP2.8□□□□□ -1.96
MCF2-204ENST00000414978 GSTO2Q9H4Y5 243 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 POLR3BQ9NW08 1133 aaPredicted RBP2.8□□□□□ -1.96
MCF2-204ENST00000414978 DTLQ9NZJ0 730 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 COQ3Q9NZJ6 369 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 KCMF1Q9P0J7 381 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 VPS4AQ9UN37 437 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 ZDHHC9Q9Y397 364 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 PIAS3Q9Y6X2 628 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 MYH3P11055 1940 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 CEMIPQ8WUJ3 1361 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 RNF123Q5XPI4 1314 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 PRSS29PA6NIE9 313 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 ERAL1O75616 437 aaKnown RBP2.8□□□□□ -1.96
MCF2-204ENST00000414978 CELF2O95319 508 aaKnown RBP2.8□□□□□ -1.96
MCF2-204ENST00000414978 CER1O95813 267 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 THP07101 528 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 GLI4P10075 376 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 HSPA5P11021 654 aaKnown RBP2.8□□□□□ -1.96
MCF2-204ENST00000414978 CYP19A1P11511 503 aaPredicted RBP2.8□□□□□ -1.96
MCF2-204ENST00000414978 DRD1P21728 446 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 SLC6A2P23975 617 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 RPS12P25398 132 aaKnown RBP2.8□□□□□ -1.96
MCF2-204ENST00000414978 CD6P30203 668 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 HADHAP40939 763 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 LIMS1P48059 325 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 SREBF2Q12772 1141 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 DGKDQ16760 1214 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 LCE2CQ5TA81 110 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 ANKS6Q68DC2 871 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 TMEM57Q8N5G2 664 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 SUPT20HQ8NEM7 779 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 TDRD7Q8NHU6 1098 aaKnown RBP2.8□□□□□ -1.96
MCF2-204ENST00000414978 GABPB2Q8TAK5 448 aaPredicted RBP2.8□□□□□ -1.96
MCF2-204ENST00000414978 SLC22A17Q8WUG5 538 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 PTP4A1Q93096 173 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 CEP95Q96GE4 821 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 AGAP2Q99490 1192 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 FAM83CQ9BQN1 747 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 SGPP1Q9BX95 441 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 CLPBQ9H078 707 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 IL21RQ9HBE5 538 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 SAYSD1Q9NPB0 183 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 LANCL2Q9NS86 450 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 NSMCE4AQ9NXX6 385 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 NOP53Q9NZM5 478 aaKnown RBP2.8□□□□□ -1.96
MCF2-204ENST00000414978 TNFRSF10DQ9UBN6 386 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 CFAP20Q9Y6A4 193 aaKnown RBP2.8□□□□□ -1.96
MCF2-204ENST00000414978 PLXNB2O15031 1838 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 LOC285556D6RIA3 1793 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 NPC1L1Q9UHC9 1359 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 NT5C1B-RDH14C9J2C7 533 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 PTGES3LE9PB15 166 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 PLOD2O00469 737 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 CAPN9O14815 690 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 AGFG2O95081 481 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 IL18BPO95998 194 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 PTPN2P17706 415 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 PPARGP37231 505 aaPredicted RBP2.8□□□□□ -1.96
MCF2-204ENST00000414978 MAGEA10P43363 369 aaPredicted RBP2.8□□□□□ -1.96
MCF2-204ENST00000414978 RNASE9P60153 205 aaKnown RBP2.8□□□□□ -1.96
MCF2-204ENST00000414978 GPS1Q13098 491 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 BFSP2Q13515 415 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 MST1LQ2TV78 715 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 TRIM60Q495X7 471 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 ZMYM1Q5SVZ6 1142 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 CNKSR3Q6P9H4 555 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 KIAA0408Q6ZU52 694 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 CEP97Q8IW35 865 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 HSCBQ8IWL3 235 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 FSTL5Q8N475 847 aaPredicted RBP2.8□□□□□ -1.96
MCF2-204ENST00000414978 MB21D1Q8N884 522 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 TMIEQ8NEW7 156 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 TBC1D15Q8TC07 691 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 GIMAP1Q8WWP7 306 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 SSH1Q8WYL5 1049 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 CFHR4Q92496 578 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 SPSB4Q96A44 273 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 ZBTB8AQ96BR9 441 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 TMEM176AQ96HP8 235 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 COX4I2Q96KJ9 171 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 SPAG5Q96R06 1193 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 FOXB1Q99853 325 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 MECRQ9BV79 373 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 TRIM54Q9BYV2 358 aa2.8□□□□□ -1.96
MCF2-204ENST00000414978 GBA2Q9HCG7 927 aaPredicted RBP2.8□□□□□ -1.96
MCF2-204ENST00000414978 ANKRD18BA2A2Z9 1011 aa2.79□□□□□ -1.96
MCF2-204ENST00000414978 AGAP5A6NIR3 686 aa2.79□□□□□ -1.96
MCF2-204ENST00000414978 ZNF839A8K0R7 811 aa2.79□□□□□ -1.96
MCF2-204ENST00000414978 FAM171A2A8MVW0 826 aa2.79□□□□□ -1.96
MCF2-204ENST00000414978 SPARCP09486 303 aa2.79□□□□□ -1.96
MCF2-204ENST00000414978 ALDH1B1P30837 517 aa2.79□□□□□ -1.96
MCF2-204ENST00000414978 CXCR5P32302 372 aa2.79□□□□□ -1.96
MCF2-204ENST00000414978 SREBF1P36956 1147 aa2.79□□□□□ -1.96
MCF2-204ENST00000414978 AARSP49588 968 aaKnown RBP eCLIP2.79□□□□□ -1.96
MCF2-204ENST00000414978 PAPOLAP51003 745 aaKnown RBP2.79□□□□□ -1.96
MCF2-204ENST00000414978 CLCN7P51798 805 aa2.79□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms