RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 CYP17A1P05093 508 aa6.68□□□□□ -1.34
USP54-202ENST00000413442 ARSAP15289 507 aa6.68□□□□□ -1.34
USP54-202ENST00000413442 UCHL3P15374 230 aa6.68□□□□□ -1.34
USP54-202ENST00000413442 CDH5P33151 784 aaPredicted RBP6.68□□□□□ -1.34
USP54-202ENST00000413442 OPRD1P41143 372 aa6.68□□□□□ -1.34
USP54-202ENST00000413442 SFSWAPQ12872 951 aaKnown RBP6.68□□□□□ -1.34
USP54-202ENST00000413442 SLC12A1Q13621 1099 aa6.68□□□□□ -1.34
USP54-202ENST00000413442 LY6G5CQ5SRR4 150 aa6.68□□□□□ -1.34
USP54-202ENST00000413442 TRIM68Q6AZZ1 485 aa6.68□□□□□ -1.34
USP54-202ENST00000413442 LAIR1Q6GTX8 287 aa6.68□□□□□ -1.34
USP54-202ENST00000413442 TXNDC11Q6PKC3 985 aa6.68□□□□□ -1.34
USP54-202ENST00000413442 TRIM72Q6ZMU5 477 aa6.68□□□□□ -1.34
USP54-202ENST00000413442 TOGARAM2Q6ZUX3 1019 aa6.68□□□□□ -1.34
USP54-202ENST00000413442 METTL3Q86U44 580 aaKnown RBP6.68□□□□□ -1.34
USP54-202ENST00000413442 ARHGEF19Q8IW93 802 aa6.68□□□□□ -1.34
USP54-202ENST00000413442 ETFBKMTQ8IXQ9 262 aa6.68□□□□□ -1.34
USP54-202ENST00000413442 PIP4P2Q8N4L2 257 aa6.68□□□□□ -1.34
USP54-202ENST00000413442 ZNF397Q8NF99 534 aaPredicted RBP6.68□□□□□ -1.34
USP54-202ENST00000413442 UBA3Q8TBC4 463 aa6.68□□□□□ -1.34
USP54-202ENST00000413442 TFAP2BQ92481 460 aa6.68□□□□□ -1.34
USP54-202ENST00000413442 TMA16Q96EY4 203 aaKnown RBP6.68□□□□□ -1.34
USP54-202ENST00000413442 ZC3H10Q96K80 434 aaKnown RBP6.68□□□□□ -1.34
USP54-202ENST00000413442 ERGIC2Q96RQ1 377 aa6.68□□□□□ -1.34
USP54-202ENST00000413442 ULBP1Q9BZM6 244 aa6.68□□□□□ -1.34
USP54-202ENST00000413442 NUCKS1Q9H1E3 243 aaKnown RBP6.68□□□□□ -1.34
USP54-202ENST00000413442 PDCL3Q9H2J4 239 aa6.68□□□□□ -1.34
USP54-202ENST00000413442 FBRSQ9HAH7 460 aa6.68□□□□□ -1.34
USP54-202ENST00000413442 ARHGEF4Q9NR80 690 aa6.68□□□□□ -1.34
USP54-202ENST00000413442 SAMSN1Q9NSI8 373 aaKnown RBP6.68□□□□□ -1.34
USP54-202ENST00000413442 MMP17Q9ULZ9 603 aa6.68□□□□□ -1.34
USP54-202ENST00000413442 ZDBF2Q9HCK1 2354 aa6.68□□□□□ -1.34
USP54-202ENST00000413442 CXorf51AA0A1B0GTR3 108 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 SLC12A8A0AV02 714 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 PRR23AA6NEV1 266 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 OTOL1A6NHN0 477 aaPredicted RBP6.67□□□□□ -1.34
USP54-202ENST00000413442 YJEFN3A6XGL0 299 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 PRR5-ARHGAP8B1AHC4 643 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 E7ENQ6 273 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 K7EQS6 105 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 K7ESF4 209 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 GFRA3O60609 400 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 HSF2BPO75031 334 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 ZNF217O75362 1048 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 TULP3O75386 442 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 RHOBTB1O94844 696 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 APBB3O95704 486 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 TBX18O95935 607 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 PENKP01210 267 aaPredicted RBP6.67□□□□□ -1.34
USP54-202ENST00000413442 IGLV3-27P01718 113 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 C7P10643 843 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 TDGF1P13385 188 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 NCAM1P13591 858 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 TYRP14679 529 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 NOS2P35228 1153 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 CLCN1P35523 988 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 USP8P40818 1118 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 STAT1P42224 750 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 KIR2DL1P43626 348 aaPredicted RBP6.67□□□□□ -1.34
USP54-202ENST00000413442 GABRB2P47870 512 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 DGKGP49619 791 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 ARHGAP8P85298 464 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 CDK17Q00537 523 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 ADIGQ0VDE8 80 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 KCNMA1Q12791 1236 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 EFEMP1Q12805 493 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 ORC1Q13415 861 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 DMC1Q14565 340 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 DRAP1Q14919 205 aaPredicted RBP6.67□□□□□ -1.34
USP54-202ENST00000413442 ARHGAP44Q17R89 818 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 ANO4Q32M45 955 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 USP39Q53GS9 565 aaKnown RBP6.67□□□□□ -1.34
USP54-202ENST00000413442 TTC39BQ5VTQ0 682 aaPredicted RBP6.67□□□□□ -1.34
USP54-202ENST00000413442 GRAMD4Q6IC98 578 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 C11orf57Q6ZUT1 292 aaPredicted RBP6.67□□□□□ -1.34
USP54-202ENST00000413442 GPRIN1Q7Z2K8 1008 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 CACNA2D4Q7Z3S7 1137 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 ALYREFQ86V81 257 aaKnown RBP6.67□□□□□ -1.34
USP54-202ENST00000413442 RASSF3Q86WH2 238 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 TMEM25Q86YD3 366 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 MIB1Q86YT6 1006 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 GPIHBP1Q8IV16 184 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 BBS7Q8IWZ6 715 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 SCUBE3Q8IX30 993 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 ATP6V0D2Q8N8Y2 350 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 TERB1Q8NA31 727 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 KDM1BQ8NB78 822 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 ST13P5Q8NFI4 369 aaPredicted RBP6.67□□□□□ -1.34
USP54-202ENST00000413442 NEK11Q8NG66 645 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 WFIKKN2Q8TEU8 576 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 IPO4Q8TEX9 1081 aaKnown RBP6.67□□□□□ -1.34
USP54-202ENST00000413442 USP33Q8TEY7 942 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 C18orf8Q96DM3 657 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 PPP1R13BQ96KQ4 1090 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 BTN2A3PQ96KV6 586 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 CRACR2AQ9BSW2 395 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 NUP58Q9BVL2 599 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 BBS2Q9BXC9 721 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 NAA15Q9BXJ9 866 aaKnown RBP6.67□□□□□ -1.34
USP54-202ENST00000413442 ST7Q9NRC1 585 aa6.67□□□□□ -1.34
USP54-202ENST00000413442 FANCLQ9NW38 375 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms