RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 PCDHA7Q9UN72 937 aa16.99■□□□□ 0.31
CUX2-202ENST00000397643 FNDC3AQ9Y2H6 1198 aaKnown RBP16.99■□□□□ 0.31
CUX2-202ENST00000397643 STON1Q9Y6Q2 735 aa16.99■□□□□ 0.31
CUX2-202ENST00000397643 ASXL3Q9C0F0 2248 aa16.98■□□□□ 0.31
CUX2-202ENST00000397643 UBE4BO95155 1302 aa16.98■□□□□ 0.31
CUX2-202ENST00000397643 CKAP5Q14008 2032 aa16.98■□□□□ 0.31
CUX2-202ENST00000397643 HHLA1C9JL84 531 aa16.98■□□□□ 0.31
CUX2-202ENST00000397643 VNN1O95497 513 aa16.98■□□□□ 0.31
CUX2-202ENST00000397643 ZNF883P0CG24 379 aa16.98■□□□□ 0.31
CUX2-202ENST00000397643 ORC1Q13415 861 aa16.98■□□□□ 0.31
CUX2-202ENST00000397643 ZNF699Q32M78 642 aa16.98■□□□□ 0.31
CUX2-202ENST00000397643 CNNM4Q6P4Q7 775 aa16.98■□□□□ 0.31
CUX2-202ENST00000397643 NELFCDQ8IXH7 590 aa16.98■□□□□ 0.31
CUX2-202ENST00000397643 C12orf56Q8IXR9 622 aa16.98■□□□□ 0.31
CUX2-202ENST00000397643 CADM4Q8NFZ8 388 aa16.98■□□□□ 0.31
CUX2-202ENST00000397643 C1orf216Q8TAB5 229 aa16.98■□□□□ 0.31
CUX2-202ENST00000397643 SLC2A14Q8TDB8 520 aa16.98■□□□□ 0.31
CUX2-202ENST00000397643 BHMTQ93088 406 aa16.98■□□□□ 0.31
CUX2-202ENST00000397643 TNIP3Q96KP6 325 aa16.98■□□□□ 0.31
CUX2-202ENST00000397643 GPR174Q9BXC1 333 aa16.98■□□□□ 0.31
CUX2-202ENST00000397643 FBXO44Q9H4M3 255 aa16.98■□□□□ 0.31
CUX2-202ENST00000397643 NMUR1Q9HB89 426 aa16.98■□□□□ 0.31
CUX2-202ENST00000397643 SCUBE2Q9NQ36 999 aa16.98■□□□□ 0.31
CUX2-202ENST00000397643 ITM2CQ9NQX7 267 aa16.98■□□□□ 0.31
CUX2-202ENST00000397643 PLK2Q9NYY3 685 aa16.98■□□□□ 0.31
CUX2-202ENST00000397643 DKK4Q9UBT3 224 aa16.98■□□□□ 0.31
CUX2-202ENST00000397643 SCML2Q9UQR0 700 aa16.98■□□□□ 0.31
CUX2-202ENST00000397643 MYH10P35580 1976 aa16.97■□□□□ 0.31
CUX2-202ENST00000397643 FLNBO75369 2602 aaKnown RBP16.97■□□□□ 0.31
CUX2-202ENST00000397643 GOLGA6L4A6NEF3 574 aa16.97■□□□□ 0.31
CUX2-202ENST00000397643 MEI4A8MW99 385 aa16.97■□□□□ 0.31
CUX2-202ENST00000397643 MDM4O15151 490 aa16.97■□□□□ 0.31
CUX2-202ENST00000397643 CYP26A1O43174 497 aa16.97■□□□□ 0.31
CUX2-202ENST00000397643 CILPO75339 1184 aa16.97■□□□□ 0.31
CUX2-202ENST00000397643 PENKP01210 267 aaPredicted RBP16.97■□□□□ 0.31
CUX2-202ENST00000397643 IGLV3-19P01714 112 aa16.97■□□□□ 0.31
CUX2-202ENST00000397643 ACO1P21399 889 aaKnown RBP16.97■□□□□ 0.31
CUX2-202ENST00000397643 ATP5C1P36542 298 aaKnown RBP16.97■□□□□ 0.31
CUX2-202ENST00000397643 IL12RB1P42701 662 aa16.97■□□□□ 0.31
CUX2-202ENST00000397643 MFAP3P55082 362 aa16.97■□□□□ 0.31
CUX2-202ENST00000397643 MAP3K7CLP57077 242 aa16.97■□□□□ 0.31
CUX2-202ENST00000397643 SNRPFP62306 86 aaKnown RBP16.97■□□□□ 0.31
CUX2-202ENST00000397643 CLDN10P78369 228 aa16.97■□□□□ 0.31
CUX2-202ENST00000397643 ZNF667Q5HYK9 610 aa16.97■□□□□ 0.31
CUX2-202ENST00000397643 KLHDC10Q6PID8 442 aa16.97■□□□□ 0.31
CUX2-202ENST00000397643 DBX2Q6ZNG2 339 aa16.97■□□□□ 0.31
CUX2-202ENST00000397643 TMPRSS7Q7RTY8 843 aa16.97■□□□□ 0.31
CUX2-202ENST00000397643 HNRNPLLQ8WVV9 542 aaKnown RBP16.97■□□□□ 0.31
CUX2-202ENST00000397643 GAREM1Q9H706 876 aa16.97■□□□□ 0.31
CUX2-202ENST00000397643 PRDM16Q9HAZ2 1276 aa16.97■□□□□ 0.31
CUX2-202ENST00000397643 THAP10Q9P2Z0 257 aaPredicted RBP16.97■□□□□ 0.31
CUX2-202ENST00000397643 LSM7Q9UK45 103 aaKnown RBP16.97■□□□□ 0.31
CUX2-202ENST00000397643 SLC27A6Q9Y2P4 619 aa16.97■□□□□ 0.31
CUX2-202ENST00000397643 GOLGA4Q13439 2230 aaKnown RBP16.97■□□□□ 0.31
CUX2-202ENST00000397643 BPTFQ12830 3046 aa16.96■□□□□ 0.31
CUX2-202ENST00000397643 LRRIQ3A6PVS8 624 aaPredicted RBP16.96■□□□□ 0.31
CUX2-202ENST00000397643 C4BPAP04003 597 aaKnown RBP16.96■□□□□ 0.31
CUX2-202ENST00000397643 ATXN1LP0C7T5 689 aaKnown RBP16.96■□□□□ 0.31
CUX2-202ENST00000397643 TPMTP51580 245 aa16.96■□□□□ 0.31
CUX2-202ENST00000397643 ASIC1P78348 528 aa16.96■□□□□ 0.31
CUX2-202ENST00000397643 NCOA4Q13772 614 aa16.96■□□□□ 0.31
CUX2-202ENST00000397643 GEN1Q17RS7 908 aa16.96■□□□□ 0.31
CUX2-202ENST00000397643 BMT2Q1RMZ1 405 aa16.96■□□□□ 0.31
CUX2-202ENST00000397643 DCAF12L1Q5VU92 463 aa16.96■□□□□ 0.31
CUX2-202ENST00000397643 MARCH9Q86YJ5 346 aa16.96■□□□□ 0.31
CUX2-202ENST00000397643 CRYBG2Q8N1P7 616 aa16.96■□□□□ 0.31
CUX2-202ENST00000397643 C12orf29Q8N999 325 aa16.96■□□□□ 0.31
CUX2-202ENST00000397643 RBBP8NLQ8NC74 664 aaPredicted RBP16.96■□□□□ 0.31
CUX2-202ENST00000397643 SETD7Q8WTS6 366 aaKnown RBP16.96■□□□□ 0.31
CUX2-202ENST00000397643 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.96■□□□□ 0.31
CUX2-202ENST00000397643 TM7SF3Q9NS93 570 aa16.96■□□□□ 0.31
CUX2-202ENST00000397643 FAM49BQ9NUQ9 324 aa16.96■□□□□ 0.31
CUX2-202ENST00000397643 MTPAPQ9NVV4 582 aaKnown RBP eCLIP16.96■□□□□ 0.31
CUX2-202ENST00000397643 NUDT5Q9UKK9 219 aa16.96■□□□□ 0.31
CUX2-202ENST00000397643 SLCO1B1Q9Y6L6 691 aa16.96■□□□□ 0.31
CUX2-202ENST00000397643 NUMA1Q14980 2115 aa16.96■□□□□ 0.3
CUX2-202ENST00000397643 METTL12A8MUP2 240 aa16.95■□□□□ 0.3
CUX2-202ENST00000397643 GOLGA6L22H0YM25 854 aa16.95■□□□□ 0.3
CUX2-202ENST00000397643 BCAT2O15382 392 aaPredicted RBP16.95■□□□□ 0.3
CUX2-202ENST00000397643 PHACTR2O75167 634 aa16.95■□□□□ 0.3
CUX2-202ENST00000397643 STC2O76061 302 aa16.95■□□□□ 0.3
CUX2-202ENST00000397643 CER1O95813 267 aa16.95■□□□□ 0.3
CUX2-202ENST00000397643 KLKB1P03952 638 aa16.95■□□□□ 0.3
CUX2-202ENST00000397643 MATKP42679 507 aa16.95■□□□□ 0.3
CUX2-202ENST00000397643 NDST1P52848 882 aa16.95■□□□□ 0.3
CUX2-202ENST00000397643 COPAP53621 1224 aa16.95■□□□□ 0.3
CUX2-202ENST00000397643 GOLGA8FQ08AF8 430 aa16.95■□□□□ 0.3
CUX2-202ENST00000397643 GOLGA8DPQ0D2H9 430 aa16.95■□□□□ 0.3
CUX2-202ENST00000397643 BIRC3Q13489 604 aa16.95■□□□□ 0.3
CUX2-202ENST00000397643 STARD3Q14849 445 aa16.95■□□□□ 0.3
CUX2-202ENST00000397643 HLA-BQ31612 363 aa16.95■□□□□ 0.3
CUX2-202ENST00000397643 FYB2Q5VWT5 728 aa16.95■□□□□ 0.3
CUX2-202ENST00000397643 CLEC20AQ6ZU45 233 aa16.95■□□□□ 0.3
CUX2-202ENST00000397643 PARD3BQ8TEW8 1205 aa16.95■□□□□ 0.3
CUX2-202ENST00000397643 C7orf25Q9BPX7 421 aa16.95■□□□□ 0.3
CUX2-202ENST00000397643 LRRC27Q9C0I9 530 aa16.95■□□□□ 0.3
CUX2-202ENST00000397643 MIR1-1HGQ9H1L0 117 aa16.95■□□□□ 0.3
CUX2-202ENST00000397643 CUEDC2Q9H467 287 aa16.95■□□□□ 0.3
CUX2-202ENST00000397643 FAM13BQ9NYF5 915 aa16.95■□□□□ 0.3
CUX2-202ENST00000397643 BTBD3Q9Y2F9 522 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms