RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 MPOP05164 745 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 VIL1P09327 827 aaKnown RBP10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 FASP25445 335 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 KRT20P35900 424 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 AGKQ53H12 422 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 IKBIPQ70UQ0 350 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 SLC5A5Q92911 643 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 MIEF2Q96C03 454 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 APOPT1Q96IL0 206 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 ZFRQ96KR1 1074 aaKnown RBP10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 TRAPPC9Q96Q05 1148 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 ZSCAN5CA6NGD5 496 aaPredicted RBP10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 SASH3O75995 380 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 NCALDP61601 193 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 MEA1Q16626 185 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 IRGCQ6NXR0 463 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 TUBA3EQ6PEY2 450 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 SV2AQ7L0J3 742 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 LPCAT2Q7L5N7 544 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 KRT74Q7RTS7 529 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 MCOLN2Q8IZK6 566 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 VCPIP1Q96JH7 1222 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 CYP4F12Q9HCS2 524 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 THAP1Q9NVV9 213 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 GPATCH2LQ9NWQ4 482 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 TMCC3Q9ULS5 477 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 SH3BP1Q9Y3L3 701 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 FAM205AQ6ZU69 1335 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 MAGEB16A2A368 324 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 NCAM2O15394 837 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 PDE9AO76083 593 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 C6orf222P0C671 652 aaPredicted RBP10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 ODC1P11926 461 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 MLNP12872 115 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 ACO1P21399 889 aaKnown RBP10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 BCAP31P51572 246 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 TUBA4AP68366 448 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 CNTN1Q12860 1018 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 ILF2Q12905 390 aaKnown RBP10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 BMPR2Q13873 1038 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 ZFP1Q6P2D0 407 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 C11orf88Q6PI97 169 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 KLHL17Q6TDP4 642 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 ACOT1Q86TX2 421 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 HS6ST3Q8IZP7 471 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 CISHQ9NSE2 258 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 LRRC4BQ9NT99 713 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 VTI1BQ9UEU0 232 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 SRRM3A6NNA2 597 aaPredicted RBP10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 BTN3A3O00478 584 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 CNOT3O75175 753 aaKnown RBP10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 FBXO21O94952 628 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 PTPN11Q06124 597 aaPredicted RBP10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 PPIDQ08752 370 aaKnown RBP10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 PKN1Q16512 942 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 DGKDQ16760 1214 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 CCDC153Q494R4 210 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 TBCELQ5QJ74 424 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 PRMT9Q6P2P2 845 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 OTOAQ7RTW8 1153 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 C4orf19Q8IY42 314 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 TCP10LQ8TDR4 215 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 OSCP1Q8WVF1 389 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 RXFP2Q8WXD0 754 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 OXNAD1Q96HP4 312 aaPredicted RBP10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 RPRD1AQ96P16 312 aaPredicted RBP10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 TSPAN18Q96SJ8 248 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 TMEM79Q9BSE2 394 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 ZCWPW1Q9H0M4 648 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 NINJ2Q9NZG7 142 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 COPG2Q9UBF2 871 aa10.53□□□□□ -0.72
LIMCH1-203ENST00000396595 MAP2K7O14733 419 aa10.52□□□□□ -0.72
LIMCH1-203ENST00000396595 TNFAIP8O95379 198 aa10.52□□□□□ -0.72
LIMCH1-203ENST00000396595 SUPT20HL2P0C7V6 817 aa10.52□□□□□ -0.72
LIMCH1-203ENST00000396595 RRM2P31350 389 aa10.52□□□□□ -0.72
LIMCH1-203ENST00000396595 GP5P40197 560 aa10.52□□□□□ -0.72
LIMCH1-203ENST00000396595 LRRN4CLQ8ND94 238 aa10.52□□□□□ -0.72
LIMCH1-203ENST00000396595 STK32AQ8WU08 396 aa10.52□□□□□ -0.72
LIMCH1-203ENST00000396595 TBCBQ99426 244 aa10.52□□□□□ -0.72
LIMCH1-203ENST00000396595 PIGUQ9H490 435 aa10.52□□□□□ -0.72
LIMCH1-203ENST00000396595 RNF181Q9P0P0 153 aa10.52□□□□□ -0.72
LIMCH1-203ENST00000396595 WBP11Q9Y2W2 641 aaKnown RBP10.52□□□□□ -0.72
LIMCH1-203ENST00000396595 PCDHA3Q9Y5H8 950 aa10.52□□□□□ -0.72
LIMCH1-203ENST00000396595 GNB5O14775 395 aa10.52□□□□□ -0.73
LIMCH1-203ENST00000396595 TNFRSF21O75509 655 aa10.52□□□□□ -0.73
LIMCH1-203ENST00000396595 FAM153BP0C7A2 387 aa10.52□□□□□ -0.73
LIMCH1-203ENST00000396595 ARP10275 920 aa10.52□□□□□ -0.73
LIMCH1-203ENST00000396595 ATP6V1B2P21281 511 aa10.52□□□□□ -0.73
LIMCH1-203ENST00000396595 MZF1P28698 734 aaPredicted RBP10.52□□□□□ -0.73
LIMCH1-203ENST00000396595 PTGS2P35354 604 aa10.52□□□□□ -0.73
LIMCH1-203ENST00000396595 SLC11A2P49281 568 aa10.52□□□□□ -0.73
LIMCH1-203ENST00000396595 FAM153CQ494X1 144 aa10.52□□□□□ -0.73
LIMCH1-203ENST00000396595 GALNTL6Q49A17 601 aa10.52□□□□□ -0.73
LIMCH1-203ENST00000396595 SEZ6Q53EL9 994 aa10.52□□□□□ -0.73
LIMCH1-203ENST00000396595 ZNF484Q5JVG2 852 aa10.52□□□□□ -0.73
LIMCH1-203ENST00000396595 TMEM63BQ5T3F8 832 aa10.52□□□□□ -0.73
LIMCH1-203ENST00000396595 HDAC7Q8WUI4 952 aa10.52□□□□□ -0.73
LIMCH1-203ENST00000396595 MAGED4Q96JG8 741 aa10.52□□□□□ -0.73
LIMCH1-203ENST00000396595 RIOX1Q9H6W3 641 aa10.52□□□□□ -0.73
LIMCH1-203ENST00000396595 GPAMQ9HCL2 828 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms