RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 PSAPL1Q6NUJ1 521 aa8.42□□□□□ -1.06
LIMS1-203ENST00000393310 PACS2Q86VP3 889 aa8.42□□□□□ -1.06
LIMS1-203ENST00000393310 PJA1Q8NG27 643 aa8.42□□□□□ -1.06
LIMS1-203ENST00000393310 CALML6Q8TD86 181 aa8.42□□□□□ -1.06
LIMS1-203ENST00000393310 HIC2Q96JB3 615 aa8.42□□□□□ -1.06
LIMS1-203ENST00000393310 UBL7Q96S82 380 aaPredicted RBP8.42□□□□□ -1.06
LIMS1-203ENST00000393310 FKBP14Q9NWM8 211 aa8.42□□□□□ -1.06
LIMS1-203ENST00000393310 MRPL39Q9NYK5 338 aaKnown RBP8.42□□□□□ -1.06
LIMS1-203ENST00000393310 PROB1E7EW31 1015 aa8.41□□□□□ -1.06
LIMS1-203ENST00000393310 SLC27A2O14975 620 aa8.41□□□□□ -1.06
LIMS1-203ENST00000393310 RHOBTB3O94955 611 aa8.41□□□□□ -1.06
LIMS1-203ENST00000393310 RALGDSQ12967 914 aa8.41□□□□□ -1.06
LIMS1-203ENST00000393310 CDH18Q13634 790 aa8.41□□□□□ -1.06
LIMS1-203ENST00000393310 SEMA3AQ14563 771 aa8.41□□□□□ -1.06
LIMS1-203ENST00000393310 PASD1Q8IV76 773 aa8.41□□□□□ -1.06
LIMS1-203ENST00000393310 TOR1AIP2Q8NFQ8 470 aa8.41□□□□□ -1.06
LIMS1-203ENST00000393310 HASPINQ8TF76 798 aa8.41□□□□□ -1.06
LIMS1-203ENST00000393310 GORASP1Q9BQQ3 440 aa8.41□□□□□ -1.06
LIMS1-203ENST00000393310 CCDC77Q9BR77 488 aa8.41□□□□□ -1.06
LIMS1-203ENST00000393310 EURLQ9NYK6 297 aa8.41□□□□□ -1.06
LIMS1-203ENST00000393310 NOP53Q9NZM5 478 aaKnown RBP8.41□□□□□ -1.06
LIMS1-203ENST00000393310 IRAK3Q9Y616 596 aa8.41□□□□□ -1.06
LIMS1-203ENST00000393310 TSPAN1O60635 241 aa8.41□□□□□ -1.06
LIMS1-203ENST00000393310 PTENP60484 403 aa8.41□□□□□ -1.06
LIMS1-203ENST00000393310 GRM2Q14416 872 aa8.41□□□□□ -1.06
LIMS1-203ENST00000393310 LPPQ93052 612 aa8.41□□□□□ -1.06
LIMS1-203ENST00000393310 PGBD1Q96JS3 809 aa8.41□□□□□ -1.06
LIMS1-203ENST00000393310 C8orf48Q96LL4 319 aa8.41□□□□□ -1.06
LIMS1-203ENST00000393310 BTBD1Q9H0C5 482 aa8.41□□□□□ -1.06
LIMS1-203ENST00000393310 CHRDQ9H2X0 955 aa8.41□□□□□ -1.06
LIMS1-203ENST00000393310 INSL5Q9Y5Q6 135 aa8.41□□□□□ -1.06
LIMS1-203ENST00000393310 RASA4O43374 803 aa8.41□□□□□ -1.06
LIMS1-203ENST00000393310 MED7O43513 233 aa8.41□□□□□ -1.06
LIMS1-203ENST00000393310 EPN2O95208 641 aa8.41□□□□□ -1.06
LIMS1-203ENST00000393310 ASLP04424 464 aa8.41□□□□□ -1.06
LIMS1-203ENST00000393310 CLUP10909 449 aa8.41□□□□□ -1.06
LIMS1-203ENST00000393310 CEACAM1P13688 526 aa8.41□□□□□ -1.06
LIMS1-203ENST00000393310 SLC2A4P14672 509 aa8.41□□□□□ -1.06
LIMS1-203ENST00000393310 CHMLP26374 656 aa8.41□□□□□ -1.06
LIMS1-203ENST00000393310 AKT2P31751 481 aa8.41□□□□□ -1.06
LIMS1-203ENST00000393310 DMC1Q14565 340 aa8.41□□□□□ -1.06
LIMS1-203ENST00000393310 C10orf120Q5SQS8 335 aa8.41□□□□□ -1.06
LIMS1-203ENST00000393310 MFSD6LQ8IWD5 586 aa8.41□□□□□ -1.06
LIMS1-203ENST00000393310 BRSK1Q8TDC3 778 aa8.41□□□□□ -1.06
LIMS1-203ENST00000393310 IPCEF1Q8WWN9 437 aaPredicted RBP8.41□□□□□ -1.06
LIMS1-203ENST00000393310 FGF13Q92913 245 aa8.41□□□□□ -1.06
LIMS1-203ENST00000393310 EIF2AK1Q9BQI3 630 aaKnown RBP8.41□□□□□ -1.06
LIMS1-203ENST00000393310 C16orf70Q9BSU1 422 aa8.41□□□□□ -1.06
LIMS1-203ENST00000393310 KIAA1024Q9UPX6 916 aa8.41□□□□□ -1.06
LIMS1-203ENST00000393310 PCDHB15Q9Y5E8 787 aa8.41□□□□□ -1.06
LIMS1-203ENST00000393310 ANKRD36CQ5JPF3 1778 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 IQANK1A0A1B0GTG1 560 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 SLC38A8A6NNN8 435 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 C4orf47A7E2U8 309 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 TMEM110-MUSTN1A8MSY1 372 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 LDOC1O95751 146 aaPredicted RBP8.4□□□□□ -1.06
LIMS1-203ENST00000393310 GRIA2P42262 883 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 MTTPP55157 894 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 KCNC4Q03721 635 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 SULT2A1Q06520 285 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 SPDYCQ5MJ68 293 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 TMEM63BQ5T3F8 832 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 TMTC4Q5T4D3 741 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 KLC3Q6P597 504 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 TMEM184AQ6ZMB5 413 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 MMTAG2Q9BU76 263 aaKnown RBP8.4□□□□□ -1.06
LIMS1-203ENST00000393310 RHOBTB2Q9BYZ6 727 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 ZBP1Q9H171 429 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 TDP1Q9NUW8 608 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 SNTG2Q9NY99 539 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 hCG_1642624A0A1W2PR95 340 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 DAPK3O43293 454 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 ANXA6P08133 673 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 GARTP22102 1010 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 STX17P56962 302 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 ZBED6P86452 979 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 KRT33BQ14525 404 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 TSC22D1Q15714 1073 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 ARL13BQ3SXY8 428 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 TAB3Q8N5C8 712 aaPredicted RBP8.4□□□□□ -1.06
LIMS1-203ENST00000393310 ANKS4BQ8N8V4 417 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 PARD6BQ9BYG5 372 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 LHX5Q9H2C1 402 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 GIMAP4Q9NUV9 329 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 ZNF624Q9P2J8 865 aaPredicted RBP8.4□□□□□ -1.06
LIMS1-203ENST00000393310 CYTH4Q9UIA0 394 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 ERVW-1Q9UQF0 538 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 UBE4BO95155 1302 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 POLR2AP24928 1970 aaKnown RBP8.4□□□□□ -1.06
LIMS1-203ENST00000393310 MCF2LO15068 1137 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 EIF2S1P05198 315 aaKnown RBP8.4□□□□□ -1.06
LIMS1-203ENST00000393310 UBASH3AP57075 661 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 GPC5P78333 572 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 ARHGEF7Q14155 803 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 RABGAP1LQ5R372 815 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 UNQ6494/PRO21346Q6UXR6 183 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 ZPBP2Q6X784 338 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 IQUBQ8NA54 791 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 RAB3IL1Q8TBN0 382 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 PPP1R13LQ8WUF5 828 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms