RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 STRADAQ7RTN6 431 aa22.36■■□□□ 1.17
TRIM54-202ENST00000380075 CDKL3Q8IVW4 592 aaPredicted RBP22.36■■□□□ 1.17
TRIM54-202ENST00000380075 C7orf61Q8IZ16 206 aa22.36■■□□□ 1.17
TRIM54-202ENST00000380075 PCDH19Q8TAB3 1148 aa22.36■■□□□ 1.17
TRIM54-202ENST00000380075 GDAP1Q8TB36 358 aa22.36■■□□□ 1.17
TRIM54-202ENST00000380075 DENND1AQ8TEH3 1009 aa22.36■■□□□ 1.17
TRIM54-202ENST00000380075 IPPQ9Y573 584 aa22.36■■□□□ 1.17
TRIM54-202ENST00000380075 TCRBV7S3A2A0A539 114 aa22.36■■□□□ 1.17
TRIM54-202ENST00000380075 XPO1O14980 1071 aaKnown RBP22.36■■□□□ 1.17
TRIM54-202ENST00000380075 SPTLC1O15269 473 aa22.36■■□□□ 1.17
TRIM54-202ENST00000380075 ASMTLO95671 621 aa22.36■■□□□ 1.17
TRIM54-202ENST00000380075 CCDC130P13994 396 aa22.36■■□□□ 1.17
TRIM54-202ENST00000380075 ADORA2BP29275 332 aa22.36■■□□□ 1.17
TRIM54-202ENST00000380075 MAGEA6P43360 314 aa22.36■■□□□ 1.17
TRIM54-202ENST00000380075 NR2C2P49116 596 aa22.36■■□□□ 1.17
TRIM54-202ENST00000380075 SLC8A3P57103 927 aa22.36■■□□□ 1.17
TRIM54-202ENST00000380075 GAD2Q05329 585 aa22.36■■□□□ 1.17
TRIM54-202ENST00000380075 TAF2Q6P1X5 1199 aa22.36■■□□□ 1.17
TRIM54-202ENST00000380075 CAPN12Q6ZSI9 719 aa22.36■■□□□ 1.17
TRIM54-202ENST00000380075 PACS2Q86VP3 889 aa22.36■■□□□ 1.17
TRIM54-202ENST00000380075 ADGRF2Q8IZF7 708 aa22.36■■□□□ 1.17
TRIM54-202ENST00000380075 B3GNT5Q9BYG0 378 aa22.36■■□□□ 1.17
TRIM54-202ENST00000380075 KLC2Q9H0B6 622 aa22.36■■□□□ 1.17
TRIM54-202ENST00000380075 TMEM39AQ9NV64 488 aa22.36■■□□□ 1.17
TRIM54-202ENST00000380075 GTF3C5Q9Y5Q8 519 aaPredicted RBP22.36■■□□□ 1.17
TRIM54-202ENST00000380075 KCNN4O15554 427 aa22.35■■□□□ 1.17
TRIM54-202ENST00000380075 PDGFRBP09619 1106 aa22.35■■□□□ 1.17
TRIM54-202ENST00000380075 SSTR1P30872 391 aa22.35■■□□□ 1.17
TRIM54-202ENST00000380075 RGS19P49795 217 aa22.35■■□□□ 1.17
TRIM54-202ENST00000380075 TRPM8Q7Z2W7 1104 aa22.35■■□□□ 1.17
TRIM54-202ENST00000380075 PSTKQ8IV42 348 aaKnown RBP22.35■■□□□ 1.17
TRIM54-202ENST00000380075 FBF1Q8TES7 1133 aa22.35■■□□□ 1.17
TRIM54-202ENST00000380075 ALKBH8Q96BT7 664 aaKnown RBP22.35■■□□□ 1.17
TRIM54-202ENST00000380075 CYTH2Q99418 400 aa22.35■■□□□ 1.17
TRIM54-202ENST00000380075 NRDE2Q9H7Z3 1164 aa22.35■■□□□ 1.17
TRIM54-202ENST00000380075 PRDM5Q9NQX1 630 aaPredicted RBP22.35■■□□□ 1.17
TRIM54-202ENST00000380075 GPATCH2LQ9NWQ4 482 aa22.35■■□□□ 1.17
TRIM54-202ENST00000380075 KLK14Q9P0G3 267 aa22.35■■□□□ 1.17
TRIM54-202ENST00000380075 TRIM43BA6NCK2 446 aa22.34■■□□□ 1.17
TRIM54-202ENST00000380075 BANF1O75531 89 aa22.34■■□□□ 1.17
TRIM54-202ENST00000380075 SPATA21Q7Z572 469 aa22.34■■□□□ 1.17
TRIM54-202ENST00000380075 GBP7Q8N8V2 638 aaPredicted RBP22.34■■□□□ 1.17
TRIM54-202ENST00000380075 TRIM43Q96BQ3 446 aaPredicted RBP22.34■■□□□ 1.17
TRIM54-202ENST00000380075 PAFAH2Q99487 392 aa22.34■■□□□ 1.17
TRIM54-202ENST00000380075 HNRNPABQ99729 332 aaKnown RBP22.34■■□□□ 1.17
TRIM54-202ENST00000380075 WDR83Q9BRX9 315 aaKnown RBP22.34■■□□□ 1.17
TRIM54-202ENST00000380075 RNF39Q9H2S5 420 aa22.34■■□□□ 1.17
TRIM54-202ENST00000380075 MLXIPLQ9NP71 852 aa22.34■■□□□ 1.17
TRIM54-202ENST00000380075 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP22.34■■□□□ 1.17
TRIM54-202ENST00000380075 TBX21Q9UL17 535 aa22.34■■□□□ 1.17
TRIM54-202ENST00000380075 TRIP12Q14669 1992 aaPredicted RBP22.34■■□□□ 1.17
TRIM54-202ENST00000380075 CYP2F1P24903 491 aa22.34■■□□□ 1.17
TRIM54-202ENST00000380075 LMO2P25791 158 aa22.34■■□□□ 1.17
TRIM54-202ENST00000380075 L1CAMP32004 1257 aa22.34■■□□□ 1.17
TRIM54-202ENST00000380075 GBP2P32456 591 aaPredicted RBP22.34■■□□□ 1.17
TRIM54-202ENST00000380075 SCTRP47872 440 aa22.34■■□□□ 1.17
TRIM54-202ENST00000380075 WDR4P57081 412 aaKnown RBP22.34■■□□□ 1.17
TRIM54-202ENST00000380075 LILRA4P59901 499 aa22.34■■□□□ 1.17
TRIM54-202ENST00000380075 CA9Q16790 459 aa22.34■■□□□ 1.17
TRIM54-202ENST00000380075 TRIM71Q2Q1W2 868 aaKnown RBP22.34■■□□□ 1.17
TRIM54-202ENST00000380075 SMG8Q8ND04 991 aaKnown RBP22.34■■□□□ 1.17
TRIM54-202ENST00000380075 SLC2A14Q8TDB8 520 aa22.34■■□□□ 1.17
TRIM54-202ENST00000380075 RAB6BQ9NRW1 208 aa22.34■■□□□ 1.17
TRIM54-202ENST00000380075 RCOR3Q9P2K3 495 aaPredicted RBP22.34■■□□□ 1.17
TRIM54-202ENST00000380075 ARL2BPQ9Y2Y0 163 aa22.34■■□□□ 1.17
TRIM54-202ENST00000380075 HEY1Q9Y5J3 304 aa22.34■■□□□ 1.17
TRIM54-202ENST00000380075 TEX264Q9Y6I9 313 aa22.34■■□□□ 1.17
TRIM54-202ENST00000380075 DNAJC8O75937 253 aaPredicted RBP22.33■■□□□ 1.17
TRIM54-202ENST00000380075 ZWINTO95229 277 aa22.33■■□□□ 1.17
TRIM54-202ENST00000380075 LCP1P13796 627 aa22.33■■□□□ 1.17
TRIM54-202ENST00000380075 TAC1P20366 129 aa22.33■■□□□ 1.17
TRIM54-202ENST00000380075 THPOP40225 353 aa22.33■■□□□ 1.17
TRIM54-202ENST00000380075 MSH2P43246 934 aa22.33■■□□□ 1.17
TRIM54-202ENST00000380075 B3GALNT2Q8NCR0 500 aa22.33■■□□□ 1.17
TRIM54-202ENST00000380075 AP4E1Q9UPM8 1137 aa22.33■■□□□ 1.17
TRIM54-202ENST00000380075 TYROBPO43914 113 aa22.32■■□□□ 1.16
TRIM54-202ENST00000380075 RBL1P28749 1068 aa22.32■■□□□ 1.16
TRIM54-202ENST00000380075 SOX4Q06945 474 aaPredicted RBP22.32■■□□□ 1.16
TRIM54-202ENST00000380075 PPP6R3Q5H9R7 873 aaPredicted RBP22.32■■□□□ 1.16
TRIM54-202ENST00000380075 MCUQ8NE86 351 aa22.32■■□□□ 1.16
TRIM54-202ENST00000380075 LRRC39Q96DD0 335 aa22.32■■□□□ 1.16
TRIM54-202ENST00000380075 PPP1R12CQ9BZL4 782 aa22.32■■□□□ 1.16
TRIM54-202ENST00000380075 HIPK3Q9H422 1215 aa22.32■■□□□ 1.16
TRIM54-202ENST00000380075 PNPLA8Q9NP80 782 aa22.32■■□□□ 1.16
TRIM54-202ENST00000380075 CA4P22748 312 aa22.32■■□□□ 1.16
TRIM54-202ENST00000380075 ITGB8P26012 769 aa22.32■■□□□ 1.16
TRIM54-202ENST00000380075 ELK3P41970 407 aa22.32■■□□□ 1.16
TRIM54-202ENST00000380075 MATKP42679 507 aa22.32■■□□□ 1.16
TRIM54-202ENST00000380075 TWF2Q6IBS0 349 aaKnown RBP22.32■■□□□ 1.16
TRIM54-202ENST00000380075 BZW1Q7L1Q6 419 aaKnown RBP22.32■■□□□ 1.16
TRIM54-202ENST00000380075 LPIN3Q9BQK8 851 aa22.32■■□□□ 1.16
TRIM54-202ENST00000380075 DUSP16Q9BY84 665 aa22.32■■□□□ 1.16
TRIM54-202ENST00000380075 DHX35Q9H5Z1 703 aaKnown RBP22.32■■□□□ 1.16
TRIM54-202ENST00000380075 SLC38A7Q9NVC3 462 aa22.32■■□□□ 1.16
TRIM54-202ENST00000380075 SLC12A4Q9UP95 1085 aa22.32■■□□□ 1.16
TRIM54-202ENST00000380075 CHMP2BQ9UQN3 213 aa22.32■■□□□ 1.16
TRIM54-202ENST00000380075 ALPK3Q96L96 1907 aa22.32■■□□□ 1.16
TRIM54-202ENST00000380075 M0QZ92 97 aa22.31■■□□□ 1.16
TRIM54-202ENST00000380075 HCRTO43612 131 aa22.31■■□□□ 1.16
TRIM54-202ENST00000380075 SPAG7O75391 227 aa22.31■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 90.2 ms