RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 ARHGEF3Q9NR81 526 aa13.88□□□□□ -0.19
CCDC3-202ENST00000378839 AP4E1Q9UPM8 1137 aa13.88□□□□□ -0.19
CCDC3-202ENST00000378839 SLC15A5A6NIM6 579 aa13.87□□□□□ -0.19
CCDC3-202ENST00000378839 CCNB1P14635 433 aa13.87□□□□□ -0.19
CCDC3-202ENST00000378839 SNCBQ16143 134 aa13.87□□□□□ -0.19
CCDC3-202ENST00000378839 FAM110CQ1W6H9 321 aa13.87□□□□□ -0.19
CCDC3-202ENST00000378839 MORN1Q5T089 497 aa13.87□□□□□ -0.19
CCDC3-202ENST00000378839 SPRYD7Q5W111 196 aa13.87□□□□□ -0.19
CCDC3-202ENST00000378839 KCNT2Q6UVM3 1135 aa13.87□□□□□ -0.19
CCDC3-202ENST00000378839 TLK2Q86UE8 772 aa13.87□□□□□ -0.19
CCDC3-202ENST00000378839 PNMA8AQ86V59 439 aaPredicted RBP13.87□□□□□ -0.19
CCDC3-202ENST00000378839 FAM131BQ86XD5 332 aa13.87□□□□□ -0.19
CCDC3-202ENST00000378839 UNC5BQ8IZJ1 945 aa13.87□□□□□ -0.19
CCDC3-202ENST00000378839 LRRC8CQ8TDW0 803 aa13.87□□□□□ -0.19
CCDC3-202ENST00000378839 ZFP42Q96MM3 310 aa13.87□□□□□ -0.19
CCDC3-202ENST00000378839 GDAP2Q9NXN4 497 aa13.87□□□□□ -0.19
CCDC3-202ENST00000378839 DTLQ9NZJ0 730 aa13.87□□□□□ -0.19
CCDC3-202ENST00000378839 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.87□□□□□ -0.19
CCDC3-202ENST00000378839 PTGESO14684 152 aa13.87□□□□□ -0.19
CCDC3-202ENST00000378839 ZWINTO95229 277 aa13.87□□□□□ -0.19
CCDC3-202ENST00000378839 DHRS4L1P0CG22 281 aa13.87□□□□□ -0.19
CCDC3-202ENST00000378839 CTU1Q7Z7A3 348 aaKnown RBP13.87□□□□□ -0.19
CCDC3-202ENST00000378839 LRRC6Q86X45 466 aa13.87□□□□□ -0.19
CCDC3-202ENST00000378839 GRAMD1AQ96CP6 724 aa13.87□□□□□ -0.19
CCDC3-202ENST00000378839 ERP27Q96DN0 273 aa13.87□□□□□ -0.19
CCDC3-202ENST00000378839 SIGLEC10Q96LC7 697 aa13.87□□□□□ -0.19
CCDC3-202ENST00000378839 TMEM237Q96Q45 408 aa13.87□□□□□ -0.19
CCDC3-202ENST00000378839 TRIM6Q9C030 488 aaPredicted RBP13.87□□□□□ -0.19
CCDC3-202ENST00000378839 ANLNQ9NQW6 1124 aa13.87□□□□□ -0.19
CCDC3-202ENST00000378839 PIH1D1Q9NWS0 290 aaKnown RBP13.87□□□□□ -0.19
CCDC3-202ENST00000378839 GTF2IRD1Q9UHL9 959 aa13.87□□□□□ -0.19
CCDC3-202ENST00000378839 UBQLN1Q9UMX0 589 aaKnown RBP13.87□□□□□ -0.19
CCDC3-202ENST00000378839 IPPQ9Y573 584 aa13.87□□□□□ -0.19
CCDC3-202ENST00000378839 HAS3O00219 553 aa13.87□□□□□ -0.19
CCDC3-202ENST00000378839 RPSAP08865 295 aaKnown RBP13.87□□□□□ -0.19
CCDC3-202ENST00000378839 CSH1P0DML2 217 aa13.87□□□□□ -0.19
CCDC3-202ENST00000378839 CSH2P0DML3 217 aa13.87□□□□□ -0.19
CCDC3-202ENST00000378839 LILRA4P59901 499 aa13.87□□□□□ -0.19
CCDC3-202ENST00000378839 UNC5AQ6ZN44 842 aa13.87□□□□□ -0.19
CCDC3-202ENST00000378839 HFE2Q6ZVN8 426 aa13.87□□□□□ -0.19
CCDC3-202ENST00000378839 PIGZQ86VD9 579 aa13.87□□□□□ -0.19
CCDC3-202ENST00000378839 PGLYRP2Q96PD5 576 aa13.87□□□□□ -0.19
CCDC3-202ENST00000378839 LGMNQ99538 433 aa13.87□□□□□ -0.19
CCDC3-202ENST00000378839 NOD2Q9HC29 1040 aa13.87□□□□□ -0.19
CCDC3-202ENST00000378839 NPHS2Q9NP85 383 aa13.87□□□□□ -0.19
CCDC3-202ENST00000378839 TMEM30AQ9NV96 361 aa13.87□□□□□ -0.19
CCDC3-202ENST00000378839 SLC17A6Q9P2U8 582 aa13.87□□□□□ -0.19
CCDC3-202ENST00000378839 I6L893 689 aaPredicted RBP13.86□□□□□ -0.19
CCDC3-202ENST00000378839 SMAPO00193 183 aa13.86□□□□□ -0.19
CCDC3-202ENST00000378839 TSHRP16473 764 aa13.86□□□□□ -0.19
CCDC3-202ENST00000378839 BCAT1P54687 386 aa13.86□□□□□ -0.19
CCDC3-202ENST00000378839 SLC18A2Q05940 514 aa13.86□□□□□ -0.19
CCDC3-202ENST00000378839 SYPL2Q5VXT5 272 aa13.86□□□□□ -0.19
CCDC3-202ENST00000378839 DEFB106AQ8N104 65 aa13.86□□□□□ -0.19
CCDC3-202ENST00000378839 PRR11Q96HE9 360 aaPredicted RBP13.86□□□□□ -0.19
CCDC3-202ENST00000378839 FAM111AQ96PZ2 611 aa13.86□□□□□ -0.19
CCDC3-202ENST00000378839 PNPLA8Q9NP80 782 aa13.86□□□□□ -0.19
CCDC3-202ENST00000378839 SCN4AP35499 1836 aa13.86□□□□□ -0.19
CCDC3-202ENST00000378839 DCAF8L1A6NGE4 600 aa13.86□□□□□ -0.19
CCDC3-202ENST00000378839 EIF4E1BA6NMX2 242 aaKnown RBP13.86□□□□□ -0.19
CCDC3-202ENST00000378839 TOP3BO95985 862 aaKnown RBP13.86□□□□□ -0.19
CCDC3-202ENST00000378839 KCNE1P15382 129 aa13.86□□□□□ -0.19
CCDC3-202ENST00000378839 RDXP35241 583 aaKnown RBP13.86□□□□□ -0.19
CCDC3-202ENST00000378839 CCDC15Q0P6D6 951 aa13.86□□□□□ -0.19
CCDC3-202ENST00000378839 ADIGQ0VDE8 80 aa13.86□□□□□ -0.19
CCDC3-202ENST00000378839 BMPR2Q13873 1038 aa13.86□□□□□ -0.19
CCDC3-202ENST00000378839 SLC45A4Q5BKX6 768 aa13.86□□□□□ -0.19
CCDC3-202ENST00000378839 PPM1NQ8N819 430 aa13.86□□□□□ -0.19
CCDC3-202ENST00000378839 CEP41Q9BYV8 373 aa13.86□□□□□ -0.19
CCDC3-202ENST00000378839 ZC3H7BQ9UGR2 993 aaKnown RBP13.86□□□□□ -0.19
CCDC3-202ENST00000378839 C2orf71A6NGG8 1288 aa13.85□□□□□ -0.19
CCDC3-202ENST00000378839 GCATO75600 419 aa13.85□□□□□ -0.19
CCDC3-202ENST00000378839 UNC5CO95185 931 aa13.85□□□□□ -0.19
CCDC3-202ENST00000378839 MT-ND3P03897 115 aa13.85□□□□□ -0.19
CCDC3-202ENST00000378839 TARSP26639 723 aaKnown RBP13.85□□□□□ -0.19
CCDC3-202ENST00000378839 PSEN2P49810 448 aa13.85□□□□□ -0.19
CCDC3-202ENST00000378839 MRPS5P82675 430 aaKnown RBP13.85□□□□□ -0.19
CCDC3-202ENST00000378839 SWT1Q5T5J6 900 aaKnown RBP13.85□□□□□ -0.19
CCDC3-202ENST00000378839 ZDHHC17Q8IUH5 632 aa13.85□□□□□ -0.19
CCDC3-202ENST00000378839 KLHL29Q96CT2 875 aa13.85□□□□□ -0.19
CCDC3-202ENST00000378839 OXNAD1Q96HP4 312 aaPredicted RBP13.85□□□□□ -0.19
CCDC3-202ENST00000378839 OLFM3Q96PB7 478 aa13.85□□□□□ -0.19
CCDC3-202ENST00000378839 KCNK13Q9HB14 408 aa13.85□□□□□ -0.19
CCDC3-202ENST00000378839 FZD10Q9ULW2 581 aa13.85□□□□□ -0.19
CCDC3-202ENST00000378839 MYADML2A6NDP7 307 aa13.85□□□□□ -0.19
CCDC3-202ENST00000378839 LPXNO60711 386 aa13.85□□□□□ -0.19
CCDC3-202ENST00000378839 DGKIO75912 1065 aa13.85□□□□□ -0.19
CCDC3-202ENST00000378839 PRKCHP24723 683 aa13.85□□□□□ -0.19
CCDC3-202ENST00000378839 CACNA2D1P54289 1103 aa13.85□□□□□ -0.19
CCDC3-202ENST00000378839 CRADDP78560 199 aa13.85□□□□□ -0.19
CCDC3-202ENST00000378839 VSIG1Q86XK7 387 aa13.85□□□□□ -0.19
CCDC3-202ENST00000378839 ADGRF2Q8IZF7 708 aa13.85□□□□□ -0.19
CCDC3-202ENST00000378839 B3GALNT2Q8NCR0 500 aa13.85□□□□□ -0.19
CCDC3-202ENST00000378839 GSTCDQ8NEC7 633 aa13.85□□□□□ -0.19
CCDC3-202ENST00000378839 APPL2Q8NEU8 664 aa13.85□□□□□ -0.19
CCDC3-202ENST00000378839 QKIQ96PU8 341 aaKnown RBP eCLIP13.85□□□□□ -0.19
CCDC3-202ENST00000378839 BAIAP2L1Q9UHR4 511 aa13.85□□□□□ -0.19
CCDC3-202ENST00000378839 SYNJ2BP-COX16A0A087WUM0 186 aa13.85□□□□□ -0.19
CCDC3-202ENST00000378839 CFAP73A6NFT4 308 aa13.85□□□□□ -0.19
CCDC3-202ENST00000378839 TRIM49D1C9J1S8 452 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms