RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 SHOC2Q9UQ13 582 aa16.18■□□□□ 0.18
CCDC40-202ENST00000374876 DNAJB1P25685 340 aa16.18■□□□□ 0.18
CCDC40-202ENST00000374876 GPD2P43304 727 aa16.18■□□□□ 0.18
CCDC40-202ENST00000374876 GABRB2P47870 512 aa16.18■□□□□ 0.18
CCDC40-202ENST00000374876 OTUD4Q01804 1114 aaKnown RBP16.18■□□□□ 0.18
CCDC40-202ENST00000374876 ADGRE1Q14246 886 aa16.18■□□□□ 0.18
CCDC40-202ENST00000374876 FAM102AQ5T9C2 384 aaPredicted RBP16.18■□□□□ 0.18
CCDC40-202ENST00000374876 RNASEH2BQ5TBB1 312 aaKnown RBP16.18■□□□□ 0.18
CCDC40-202ENST00000374876 BBS12Q6ZW61 710 aa16.18■□□□□ 0.18
CCDC40-202ENST00000374876 CCDC13Q8IYE1 715 aa16.18■□□□□ 0.18
CCDC40-202ENST00000374876 SLC39A11Q8N1S5 342 aa16.18■□□□□ 0.18
CCDC40-202ENST00000374876 RIBC1Q8N443 379 aaPredicted RBP16.18■□□□□ 0.18
CCDC40-202ENST00000374876 ANKRD42Q8N9B4 389 aa16.18■□□□□ 0.18
CCDC40-202ENST00000374876 ACTL9Q8TC94 416 aa16.18■□□□□ 0.18
CCDC40-202ENST00000374876 SPPL3Q8TCT6 385 aa16.18■□□□□ 0.18
CCDC40-202ENST00000374876 MCRS1Q96EZ8 462 aa16.18■□□□□ 0.18
CCDC40-202ENST00000374876 C11orf84Q9BUA3 381 aaPredicted RBP16.18■□□□□ 0.18
CCDC40-202ENST00000374876 ACTR5Q9H9F9 607 aaPredicted RBP16.18■□□□□ 0.18
CCDC40-202ENST00000374876 SPG21Q9NZD8 308 aa16.18■□□□□ 0.18
CCDC40-202ENST00000374876 BARX2Q9UMQ3 279 aaPredicted RBP16.18■□□□□ 0.18
CCDC40-202ENST00000374876 C2CD2Q9Y426 696 aa16.18■□□□□ 0.18
CCDC40-202ENST00000374876 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.18■□□□□ 0.18
CCDC40-202ENST00000374876 RALGAPA2Q2PPJ7 1873 aa16.17■□□□□ 0.18
CCDC40-202ENST00000374876 EXOC1LA0A1B0GW35 172 aa16.17■□□□□ 0.18
CCDC40-202ENST00000374876 FOXO6A8MYZ6 492 aa16.17■□□□□ 0.18
CCDC40-202ENST00000374876 IGFBP4P22692 258 aa16.17■□□□□ 0.18
CCDC40-202ENST00000374876 RDXP35241 583 aaKnown RBP16.17■□□□□ 0.18
CCDC40-202ENST00000374876 CLCNKBP51801 687 aa16.17■□□□□ 0.18
CCDC40-202ENST00000374876 ACTN3Q08043 901 aaPredicted RBP16.17■□□□□ 0.18
CCDC40-202ENST00000374876 ACAP1Q15027 740 aa16.17■□□□□ 0.18
CCDC40-202ENST00000374876 CENPUQ71F23 418 aa16.17■□□□□ 0.18
CCDC40-202ENST00000374876 PIGWQ7Z7B1 504 aa16.17■□□□□ 0.18
CCDC40-202ENST00000374876 PCGF5Q86SE9 256 aa16.17■□□□□ 0.18
CCDC40-202ENST00000374876 CYP4X1Q8N118 509 aa16.17■□□□□ 0.18
CCDC40-202ENST00000374876 TTC39CQ8N584 583 aa16.17■□□□□ 0.18
CCDC40-202ENST00000374876 UBA3Q8TBC4 463 aa16.17■□□□□ 0.18
CCDC40-202ENST00000374876 HASPINQ8TF76 798 aa16.17■□□□□ 0.18
CCDC40-202ENST00000374876 P3H4Q92791 437 aa16.17■□□□□ 0.18
CCDC40-202ENST00000374876 IGSF21Q96ID5 467 aa16.17■□□□□ 0.18
CCDC40-202ENST00000374876 TMEM175Q9BSA9 504 aa16.17■□□□□ 0.18
CCDC40-202ENST00000374876 ASNSD1Q9NWL6 643 aa16.17■□□□□ 0.18
CCDC40-202ENST00000374876 TUBGCP4Q9UGJ1 667 aa16.17■□□□□ 0.18
CCDC40-202ENST00000374876 MIPP30301 263 aa16.16■□□□□ 0.18
CCDC40-202ENST00000374876 NDST1P52848 882 aa16.16■□□□□ 0.18
CCDC40-202ENST00000374876 ZBTB6Q15916 424 aa16.16■□□□□ 0.18
CCDC40-202ENST00000374876 TAZQ16635 292 aa16.16■□□□□ 0.18
CCDC40-202ENST00000374876 NT5DC4Q86YG4 428 aa16.16■□□□□ 0.18
CCDC40-202ENST00000374876 RFX6Q8HWS3 928 aa16.16■□□□□ 0.18
CCDC40-202ENST00000374876 SRRM1Q8IYB3 904 aaKnown RBP16.16■□□□□ 0.18
CCDC40-202ENST00000374876 POF1BQ8WVV4 589 aa16.16■□□□□ 0.18
CCDC40-202ENST00000374876 RSAD2Q8WXG1 361 aa16.16■□□□□ 0.18
CCDC40-202ENST00000374876 HSPH1Q92598 858 aa16.16■□□□□ 0.18
CCDC40-202ENST00000374876 ELAC2Q9BQ52 826 aaKnown RBP16.16■□□□□ 0.18
CCDC40-202ENST00000374876 KIAA1257Q9ULG3 409 aa16.16■□□□□ 0.18
CCDC40-202ENST00000374876 USP18Q9UMW8 372 aa16.16■□□□□ 0.18
CCDC40-202ENST00000374876 MYO7AQ13402 2215 aa16.16■□□□□ 0.18
CCDC40-202ENST00000374876 CD48P09326 243 aa16.16■□□□□ 0.18
CCDC40-202ENST00000374876 INCA1Q0VD86 236 aa16.16■□□□□ 0.18
CCDC40-202ENST00000374876 CAMK1Q14012 370 aa16.16■□□□□ 0.18
CCDC40-202ENST00000374876 ITIH4Q14624 930 aa16.16■□□□□ 0.18
CCDC40-202ENST00000374876 TMED2Q15363 201 aa16.16■□□□□ 0.18
CCDC40-202ENST00000374876 HP1BP3Q5SSJ5 553 aaPredicted RBP16.16■□□□□ 0.18
CCDC40-202ENST00000374876 ZBED8Q8IZ13 594 aa16.16■□□□□ 0.18
CCDC40-202ENST00000374876 TMEM169Q96HH4 297 aa16.16■□□□□ 0.18
CCDC40-202ENST00000374876 NT5C1AQ9BXI3 368 aa16.16■□□□□ 0.18
CCDC40-202ENST00000374876 MIS12Q9H081 205 aa16.16■□□□□ 0.18
CCDC40-202ENST00000374876 FAM124BQ9H5Z6 455 aaPredicted RBP16.16■□□□□ 0.18
CCDC40-202ENST00000374876 VPS37BQ9H9H4 285 aa16.16■□□□□ 0.18
CCDC40-202ENST00000374876 SLC38A7Q9NVC3 462 aa16.16■□□□□ 0.18
CCDC40-202ENST00000374876 MARCH5Q9NX47 278 aa16.16■□□□□ 0.18
CCDC40-202ENST00000374876 NKIRAS1Q9NYS0 192 aa16.16■□□□□ 0.18
CCDC40-202ENST00000374876 ACTL7BQ9Y614 415 aa16.16■□□□□ 0.18
CCDC40-202ENST00000374876 PLXNA4Q9HCM2 1894 aa16.15■□□□□ 0.18
CCDC40-202ENST00000374876 RASA4BC9J798 803 aa16.15■□□□□ 0.18
CCDC40-202ENST00000374876 RASA4O43374 803 aa16.15■□□□□ 0.18
CCDC40-202ENST00000374876 STAU1O95793 577 aaKnown RBP16.15■□□□□ 0.18
CCDC40-202ENST00000374876 TRUB2O95900 331 aaKnown RBP16.15■□□□□ 0.18
CCDC40-202ENST00000374876 ZNF143P52747 638 aaPredicted RBP16.15■□□□□ 0.18
CCDC40-202ENST00000374876 FASTKD3Q14CZ7 662 aaKnown RBP16.15■□□□□ 0.18
CCDC40-202ENST00000374876 ANKRD20A8PQ5CZ79 823 aa16.15■□□□□ 0.18
CCDC40-202ENST00000374876 ARHGEF18Q6ZSZ5 1173 aa16.15■□□□□ 0.18
CCDC40-202ENST00000374876 CMASQ8NFW8 434 aaPredicted RBP16.15■□□□□ 0.18
CCDC40-202ENST00000374876 PRCCQ92733 491 aaPredicted RBP16.15■□□□□ 0.18
CCDC40-202ENST00000374876 CALN1Q9BXU9 219 aa16.15■□□□□ 0.18
CCDC40-202ENST00000374876 KDM4CQ9H3R0 1056 aa16.15■□□□□ 0.18
CCDC40-202ENST00000374876 MLXIPLQ9NP71 852 aa16.15■□□□□ 0.18
CCDC40-202ENST00000374876 TCP11X1B4DZS4 312 aa16.14■□□□□ 0.17
CCDC40-202ENST00000374876 GOLGA8MH3BSY2 632 aa16.14■□□□□ 0.17
CCDC40-202ENST00000374876 ALOX15BO15296 676 aa16.14■□□□□ 0.17
CCDC40-202ENST00000374876 TADA2AO75478 443 aa16.14■□□□□ 0.17
CCDC40-202ENST00000374876 GPD1P21695 349 aa16.14■□□□□ 0.17
CCDC40-202ENST00000374876 PCK1P35558 622 aa16.14■□□□□ 0.17
CCDC40-202ENST00000374876 PPM1AP35813 382 aa16.14■□□□□ 0.17
CCDC40-202ENST00000374876 ERVFC1P60507 584 aa16.14■□□□□ 0.17
CCDC40-202ENST00000374876 SF3A3Q12874 501 aaKnown RBP eCLIP16.14■□□□□ 0.174e-9■■■■■ 57
CCDC40-202ENST00000374876 PDIA2Q13087 525 aaKnown RBP16.14■□□□□ 0.17
CCDC40-202ENST00000374876 NR1H3Q13133 447 aa16.14■□□□□ 0.17
CCDC40-202ENST00000374876 HIF1AQ16665 826 aa16.14■□□□□ 0.17
CCDC40-202ENST00000374876 UPP1Q16831 310 aa16.14■□□□□ 0.17
CCDC40-202ENST00000374876 FBXW10Q5XX13 1052 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms