RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 KCNJ11Q14654 390 aa9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 PAFAH1B3Q15102 231 aaKnown RBP9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 KCNT1Q5JUK3 1230 aa9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 HEATR6Q6AI08 1181 aaKnown RBP9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 PM20D1Q6GTS8 502 aa9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 LLGL2Q6P1M3 1020 aa9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 DSTYKQ6XUX3 929 aa9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 C3orf62Q6ZUJ4 267 aa9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 CYP4V2Q6ZWL3 525 aaPredicted RBP9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 PHLDB2Q86SQ0 1253 aa9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 TRABD2AQ86V40 505 aa9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 PIGZQ86VD9 579 aa9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 LCA5Q86VQ0 697 aa9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 CPNE8Q86YQ8 564 aa9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 ZBED8Q8IZ13 594 aa9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 ARHGAP18Q8N392 663 aa9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 EMC1Q8N766 993 aa9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 C12orf29Q8N999 325 aa9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 SLC2A14Q8TDB8 520 aa9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 ACMSDQ8TDX5 336 aa9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 TFB1MQ8WVM0 346 aaKnown RBP9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 CDKL2Q92772 493 aa9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 FUBP3Q96I24 572 aaKnown RBP eCLIP9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 ZNF668Q96K58 619 aaPredicted RBP9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 SENP8Q96LD8 212 aa9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 QKIQ96PU8 341 aaKnown RBP eCLIP9.04□□□□□ -0.964e-23■■■■□ 21.7
SNRNP40-202ENST00000373720 NPY6RQ99463 290 aa9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 SELENOSQ9BQE4 189 aa9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 SNRNP25Q9BV90 132 aaKnown RBP9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 VPS37BQ9H9H4 285 aa9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 USP29Q9HBJ7 922 aa9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 MKS1Q9NXB0 559 aa9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 HMGXB4Q9UGU5 601 aa9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 PCSK1NQ9UHG2 260 aa9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 FZD10Q9ULW2 581 aa9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 AP4E1Q9UPM8 1137 aa9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 STARD13Q9Y3M8 1113 aa9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 CDY2AQ9Y6F7 541 aa9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 CASP8AP2Q9UKL3 1982 aa9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 PDCD11Q14690 1871 aaKnown RBP9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 TMEM120BA0PK00 339 aa9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 FAM155AB1AL88 458 aaPredicted RBP9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 PTGESO14684 152 aa9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 CAPN9O14815 690 aa9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 ADCY6O43306 1168 aa9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 ADAMTS4O75173 837 aa9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 SLC2A3P11169 496 aa9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 DRD4P21917 467 aa9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 AKAP5P24588 427 aa9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 PRKCHP24723 683 aa9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 CYP2F1P24903 491 aa9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 DNAJB1P25685 340 aa9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 HADHAP40939 763 aa9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 PSMC4P43686 418 aa9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 TSPY1Q01534 308 aa9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 CRHR2Q13324 411 aa9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 TRIP13Q15645 432 aaPredicted RBP9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 SEPT7Q16181 437 aaKnown RBP9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 NFE2Q16621 373 aaPredicted RBP9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 UPP1Q16831 310 aa9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 LONRF1Q17RB8 773 aa9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 PARP6Q2NL67 630 aa9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 NBPF20Q3BBV1 942 aa9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 BRMS1LQ5PSV4 323 aa9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 ITPRIPL1Q6GPH6 555 aa9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 SCYL2Q6P3W7 929 aa9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 FAM171BQ6P995 826 aa9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 SLC26A11Q86WA9 606 aa9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 LRRC6Q86X45 466 aa9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 CCDC117Q8IWD4 279 aaPredicted RBP9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 FUKQ8N0W3 1084 aa9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 SMC1BQ8NDV3 1235 aa9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 PCDH19Q8TAB3 1148 aa9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 GABPB2Q8TAK5 448 aaPredicted RBP9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 EPS8L3Q8TE67 593 aaKnown RBP9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 TMEM40Q8WWA1 233 aa9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 FATE1Q969F0 183 aa9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 TTC17Q96AE7 1141 aa9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 ELMO3Q96BJ8 720 aa9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 SEC16BQ96JE7 1060 aa9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 FAM84AQ96KN4 292 aa9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 SYT15Q9BQS2 421 aa9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 SIKE1Q9BRV8 207 aa9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 OSBPL2Q9H1P3 480 aa9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 ELAC1Q9H777 363 aaKnown RBP9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 CDHR5Q9HBB8 845 aa9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 XPNPEP3Q9NQH7 507 aa9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 HAUS2Q9NVX0 235 aa9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 DDX43Q9NXZ2 648 aaKnown RBP9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 TEX264Q9Y6I9 313 aa9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 SRCAPQ6ZRS2 3230 aa9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 GOLGB1Q14789 3259 aaKnown RBP9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 SCN10AQ9Y5Y9 1956 aa9.03□□□□□ -0.96
SNRNP40-202ENST00000373720 CFAP73A6NFT4 308 aa9.02□□□□□ -0.97
SNRNP40-202ENST00000373720 ARL5CA6NH57 179 aa9.02□□□□□ -0.97
SNRNP40-202ENST00000373720 TMEM88BA6NKF7 163 aa9.02□□□□□ -0.97
SNRNP40-202ENST00000373720 KLF11O14901 512 aa9.02□□□□□ -0.97
SNRNP40-202ENST00000373720 FGF10O15520 208 aaPredicted RBP9.02□□□□□ -0.97
SNRNP40-202ENST00000373720 KCNN4O15554 427 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms