RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 GSDMBQ8TAX9 411 aa16.95■□□□□ 0.3
SDC4-201ENST00000372733 RAB3IL1Q8TBN0 382 aa16.95■□□□□ 0.3
SDC4-201ENST00000372733 DEPDC1BQ8WUY9 529 aa16.95■□□□□ 0.3
SDC4-201ENST00000372733 USP6NLQ92738 828 aa16.95■□□□□ 0.3
SDC4-201ENST00000372733 AZIN2Q96A70 460 aa16.95■□□□□ 0.3
SDC4-201ENST00000372733 FRMD8Q9BZ67 464 aaPredicted RBP16.95■□□□□ 0.3
SDC4-201ENST00000372733 THAP1Q9NVV9 213 aa16.95■□□□□ 0.3
SDC4-201ENST00000372733 DNAJB4Q9UDY4 337 aa16.95■□□□□ 0.3
SDC4-201ENST00000372733 F5H423 210 aaPredicted RBP16.95■□□□□ 0.3
SDC4-201ENST00000372733 APOL1O14791 398 aa16.95■□□□□ 0.3
SDC4-201ENST00000372733 BIRC5O15392 142 aa16.95■□□□□ 0.3
SDC4-201ENST00000372733 MAFO75444 373 aaPredicted RBP16.95■□□□□ 0.3
SDC4-201ENST00000372733 APBA3O96018 575 aa16.95■□□□□ 0.3
SDC4-201ENST00000372733 GSRP00390 522 aa16.95■□□□□ 0.3
SDC4-201ENST00000372733 ADORA2AP29274 412 aa16.95■□□□□ 0.3
SDC4-201ENST00000372733 GABRB2P47870 512 aa16.95■□□□□ 0.3
SDC4-201ENST00000372733 SFT2D3Q587I9 215 aa16.95■□□□□ 0.3
SDC4-201ENST00000372733 RABGAP1LQ5R372 815 aa16.95■□□□□ 0.3
SDC4-201ENST00000372733 RASIP1Q5U651 963 aa16.95■□□□□ 0.3
SDC4-201ENST00000372733 LPCAT4Q643R3 524 aa16.95■□□□□ 0.3
SDC4-201ENST00000372733 OR6B2Q6IFH4 312 aa16.95■□□□□ 0.3
SDC4-201ENST00000372733 AGBL3Q8NEM8 1001 aa16.95■□□□□ 0.3
SDC4-201ENST00000372733 PCDH19Q8TAB3 1148 aa16.95■□□□□ 0.3
SDC4-201ENST00000372733 FAM172AQ8WUF8 416 aa16.95■□□□□ 0.3
SDC4-201ENST00000372733 PPP2R3CQ969Q6 453 aa16.95■□□□□ 0.3
SDC4-201ENST00000372733 SIGLEC10Q96LC7 697 aa16.95■□□□□ 0.3
SDC4-201ENST00000372733 TEX13BQ9BXU2 312 aa16.95■□□□□ 0.3
SDC4-201ENST00000372733 C1orf21Q9H246 121 aa16.95■□□□□ 0.3
SDC4-201ENST00000372733 NGRNQ9NPE2 291 aaKnown RBP16.95■□□□□ 0.3
SDC4-201ENST00000372733 FZD1Q9UP38 647 aa16.95■□□□□ 0.3
SDC4-201ENST00000372733 AFG3L2Q9Y4W6 797 aa16.95■□□□□ 0.3
SDC4-201ENST00000372733 RLFQ13129 1914 aa16.94■□□□□ 0.3
SDC4-201ENST00000372733 IGKV6D-21A0A0A0MT36 114 aa16.94■□□□□ 0.3
SDC4-201ENST00000372733 FKBP6O75344 327 aa16.94■□□□□ 0.3
SDC4-201ENST00000372733 LGR5O75473 907 aa16.94■□□□□ 0.3
SDC4-201ENST00000372733 GJB1P08034 283 aa16.94■□□□□ 0.3
SDC4-201ENST00000372733 KCNA4P22459 653 aa16.94■□□□□ 0.3
SDC4-201ENST00000372733 CDK7P50613 346 aa16.94■□□□□ 0.3
SDC4-201ENST00000372733 RPS6KA3P51812 740 aa16.94■□□□□ 0.3
SDC4-201ENST00000372733 STXBP2Q15833 593 aa16.94■□□□□ 0.3
SDC4-201ENST00000372733 TMEM132AQ24JP5 1023 aa16.94■□□□□ 0.3
SDC4-201ENST00000372733 TEDDM1Q5T9Z0 273 aa16.94■□□□□ 0.3
SDC4-201ENST00000372733 MBLAC2Q68D91 279 aa16.94■□□□□ 0.3
SDC4-201ENST00000372733 RSPH3Q86UC2 560 aa16.94■□□□□ 0.3
SDC4-201ENST00000372733 RASSF3Q86WH2 238 aa16.94■□□□□ 0.3
SDC4-201ENST00000372733 C1orf127Q8N9H9 656 aa16.94■□□□□ 0.3
SDC4-201ENST00000372733 CYP4F11Q9HBI6 524 aa16.94■□□□□ 0.3
SDC4-201ENST00000372733 EMCNQ9ULC0 261 aa16.94■□□□□ 0.3
SDC4-201ENST00000372733 PHIPQ8WWQ0 1821 aa16.94■□□□□ 0.3
SDC4-201ENST00000372733 LCTP09848 1927 aa16.94■□□□□ 0.3
SDC4-201ENST00000372733 MGAMO43451 1857 aa16.94■□□□□ 0.3
SDC4-201ENST00000372733 CYP3A5P20815 502 aa16.94■□□□□ 0.3
SDC4-201ENST00000372733 MAGEA3P43357 314 aa16.94■□□□□ 0.3
SDC4-201ENST00000372733 MAGEA6P43360 314 aa16.94■□□□□ 0.3
SDC4-201ENST00000372733 CXCL9Q07325 125 aa16.94■□□□□ 0.3
SDC4-201ENST00000372733 ARCQ7LC44 396 aa16.94■□□□□ 0.3
SDC4-201ENST00000372733 MAVSQ7Z434 540 aa16.94■□□□□ 0.3
SDC4-201ENST00000372733 PDSS2Q86YH6 399 aa16.94■□□□□ 0.3
SDC4-201ENST00000372733 SLC26A7Q8TE54 656 aa16.94■□□□□ 0.3
SDC4-201ENST00000372733 APBB2Q92870 758 aa16.94■□□□□ 0.3
SDC4-201ENST00000372733 EBNA1BP2Q99848 306 aaKnown RBP16.94■□□□□ 0.3
SDC4-201ENST00000372733 PCDH18Q9HCL0 1135 aa16.94■□□□□ 0.3
SDC4-201ENST00000372733 NRBP2Q9NSY0 501 aa16.94■□□□□ 0.3
SDC4-201ENST00000372733 B4GALT4O60513 344 aa16.93■□□□□ 0.3
SDC4-201ENST00000372733 CILPO75339 1184 aa16.93■□□□□ 0.3
SDC4-201ENST00000372733 FGF3P11487 239 aaPredicted RBP16.93■□□□□ 0.3
SDC4-201ENST00000372733 STAT5BP51692 787 aa16.93■□□□□ 0.3
SDC4-201ENST00000372733 CBLBQ13191 982 aa16.93■□□□□ 0.3
SDC4-201ENST00000372733 PEX6Q13608 980 aa16.93■□□□□ 0.3
SDC4-201ENST00000372733 CCNIQ14094 377 aa16.93■□□□□ 0.3
SDC4-201ENST00000372733 DPY19L2Q6NUT2 758 aa16.93■□□□□ 0.3
SDC4-201ENST00000372733 MPZL3Q6UWV2 235 aa16.93■□□□□ 0.3
SDC4-201ENST00000372733 ATG14Q6ZNE5 492 aa16.93■□□□□ 0.3
SDC4-201ENST00000372733 ACAD11Q709F0 780 aa16.93■□□□□ 0.3
SDC4-201ENST00000372733 TRIM50Q86XT4 487 aa16.93■□□□□ 0.3
SDC4-201ENST00000372733 WDR75Q8IWA0 830 aaKnown RBP16.93■□□□□ 0.3
SDC4-201ENST00000372733 ZBTB8OSQ8IWT0 167 aa16.93■□□□□ 0.3
SDC4-201ENST00000372733 EFCAB3Q8N7B9 438 aa16.93■□□□□ 0.3
SDC4-201ENST00000372733 HIPK4Q8NE63 616 aa16.93■□□□□ 0.3
SDC4-201ENST00000372733 TMEM176AQ96HP8 235 aa16.93■□□□□ 0.3
SDC4-201ENST00000372733 GORASP1Q9BQQ3 440 aa16.93■□□□□ 0.3
SDC4-201ENST00000372733 SPATA16Q9BXB7 569 aa16.93■□□□□ 0.3
SDC4-201ENST00000372733 PEX10O60683 326 aa16.93■□□□□ 0.3
SDC4-201ENST00000372733 FARP2O94887 1054 aaPredicted RBP16.93■□□□□ 0.3
SDC4-201ENST00000372733 ITGB3P05106 788 aa16.93■□□□□ 0.3
SDC4-201ENST00000372733 ETS2P15036 469 aa16.93■□□□□ 0.3
SDC4-201ENST00000372733 PEX2P28328 305 aa16.93■□□□□ 0.3
SDC4-201ENST00000372733 L1CAMP32004 1257 aa16.93■□□□□ 0.3
SDC4-201ENST00000372733 RGS7P49802 495 aa16.93■□□□□ 0.3
SDC4-201ENST00000372733 OAZ1P54368 228 aa16.93■□□□□ 0.3
SDC4-201ENST00000372733 ASPHQ12797 758 aa16.93■□□□□ 0.3
SDC4-201ENST00000372733 MSLNQ13421 630 aaPredicted RBP16.93■□□□□ 0.3
SDC4-201ENST00000372733 LIN52Q52LA3 116 aa16.93■□□□□ 0.3
SDC4-201ENST00000372733 PPP6R3Q5H9R7 873 aaPredicted RBP16.93■□□□□ 0.3
SDC4-201ENST00000372733 N4BP2L1Q5TBK1 243 aaPredicted RBP16.93■□□□□ 0.3
SDC4-201ENST00000372733 PIWIL2Q8TC59 973 aaKnown RBP16.93■□□□□ 0.3
SDC4-201ENST00000372733 HEXIM2Q96MH2 286 aaKnown RBP16.93■□□□□ 0.3
SDC4-201ENST00000372733 ADAMTS6Q9UKP5 1117 aa16.93■□□□□ 0.3
SDC4-201ENST00000372733 NR2E3Q9Y5X4 410 aa16.93■□□□□ 0.3
SDC4-201ENST00000372733 BCLAF3A2AJT9 711 aaKnown RBP16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms