RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 ACO2Q99798 780 aaKnown RBP11.94□□□□□ -0.5
SYNE1-204ENST00000367248 C2CD2Q9Y426 696 aa11.94□□□□□ -0.5
SYNE1-204ENST00000367248 CHUKO15111 745 aa11.94□□□□□ -0.5
SYNE1-204ENST00000367248 TOMM70O94826 608 aa11.94□□□□□ -0.5
SYNE1-204ENST00000367248 LUC7L3O95232 432 aaKnown RBP11.94□□□□□ -0.5
SYNE1-204ENST00000367248 INPP1P49441 399 aa11.94□□□□□ -0.5
SYNE1-204ENST00000367248 PHKG1Q16816 387 aa11.94□□□□□ -0.5
SYNE1-204ENST00000367248 SCUBE3Q8IX30 993 aa11.94□□□□□ -0.5
SYNE1-204ENST00000367248 C3orf20Q8ND61 904 aa11.94□□□□□ -0.5
SYNE1-204ENST00000367248 ZIM3Q96PE6 472 aa11.94□□□□□ -0.5
SYNE1-204ENST00000367248 FTHL17Q9BXU8 183 aa11.94□□□□□ -0.5
SYNE1-204ENST00000367248 TRIM45Q9H8W5 580 aaPredicted RBP11.94□□□□□ -0.5
SYNE1-204ENST00000367248 SIK3Q9Y2K2 1263 aa11.94□□□□□ -0.5
SYNE1-204ENST00000367248 LOC102724159A0A0B4J2E5 919 aa11.94□□□□□ -0.5
SYNE1-204ENST00000367248 E5RJQ4 531 aa11.94□□□□□ -0.5
SYNE1-204ENST00000367248 ONECUT3O60422 494 aaPredicted RBP11.94□□□□□ -0.5
SYNE1-204ENST00000367248 RAMP2O60895 175 aa11.94□□□□□ -0.5
SYNE1-204ENST00000367248 DDX5P17844 614 aaKnown RBP11.94□□□□□ -0.5
SYNE1-204ENST00000367248 CRHR2Q13324 411 aa11.94□□□□□ -0.5
SYNE1-204ENST00000367248 PWP2Q15269 919 aaKnown RBP11.94□□□□□ -0.5
SYNE1-204ENST00000367248 ERMARDQ5T6L9 678 aa11.94□□□□□ -0.5
SYNE1-204ENST00000367248 MARC1Q5VT66 337 aa11.94□□□□□ -0.5
SYNE1-204ENST00000367248 ABHD15Q6UXT9 468 aa11.94□□□□□ -0.5
SYNE1-204ENST00000367248 EPS8L1Q8TE68 723 aa11.94□□□□□ -0.5
SYNE1-204ENST00000367248 TMEM121Q9BTD3 319 aa11.94□□□□□ -0.5
SYNE1-204ENST00000367248 ATP13A1Q9HD20 1204 aa11.94□□□□□ -0.5
SYNE1-204ENST00000367248 ADA2Q9NZK5 511 aa11.94□□□□□ -0.5
SYNE1-204ENST00000367248 SPASTQ9UBP0 616 aa11.94□□□□□ -0.5
SYNE1-204ENST00000367248 MAP2P11137 1827 aaKnown RBP11.94□□□□□ -0.5
SYNE1-204ENST00000367248 TMEM120BA0PK00 339 aa11.94□□□□□ -0.5
SYNE1-204ENST00000367248 PTPN1P18031 435 aaKnown RBP11.94□□□□□ -0.5
SYNE1-204ENST00000367248 FBXO25Q8TCJ0 367 aa11.94□□□□□ -0.5
SYNE1-204ENST00000367248 CASKIN2Q8WXE0 1202 aa11.94□□□□□ -0.5
SYNE1-204ENST00000367248 UROC1Q96N76 676 aa11.94□□□□□ -0.5
SYNE1-204ENST00000367248 CCDC3Q9BQI4 270 aa11.94□□□□□ -0.5
SYNE1-204ENST00000367248 DNAJC18Q9H819 358 aa11.94□□□□□ -0.5
SYNE1-204ENST00000367248 POPDC2Q9HBU9 364 aa11.94□□□□□ -0.5
SYNE1-204ENST00000367248 TDRKHQ9Y2W6 561 aaKnown RBP11.94□□□□□ -0.5
SYNE1-204ENST00000367248 TCP11X1B4DZS4 312 aa11.93□□□□□ -0.5
SYNE1-204ENST00000367248 CTSEP14091 401 aa11.93□□□□□ -0.5
SYNE1-204ENST00000367248 PRKCIP41743 596 aa11.93□□□□□ -0.5
SYNE1-204ENST00000367248 IL17AQ16552 155 aa11.93□□□□□ -0.5
SYNE1-204ENST00000367248 TEDDM1Q5T9Z0 273 aa11.93□□□□□ -0.5
SYNE1-204ENST00000367248 REM2Q8IYK8 340 aaPredicted RBP11.93□□□□□ -0.5
SYNE1-204ENST00000367248 LPCAT1Q8NF37 534 aa11.93□□□□□ -0.5
SYNE1-204ENST00000367248 ARL8AQ96BM9 186 aa11.93□□□□□ -0.5
SYNE1-204ENST00000367248 FICDQ9BVA6 458 aa11.93□□□□□ -0.5
SYNE1-204ENST00000367248 MAF1Q9H063 256 aa11.93□□□□□ -0.5
SYNE1-204ENST00000367248 RBM22Q9NW64 420 aaKnown RBP eCLIP11.93□□□□□ -0.5
SYNE1-204ENST00000367248 BAZ2BQ9UIF8 2168 aaKnown RBP11.93□□□□□ -0.5
SYNE1-204ENST00000367248 C1orf146Q5VVC0 180 aa11.93□□□□□ -0.5
SYNE1-204ENST00000367248 TRMT11Q7Z4G4 463 aaKnown RBP11.93□□□□□ -0.5
SYNE1-204ENST00000367248 LZTR1Q8N653 840 aa11.93□□□□□ -0.5
SYNE1-204ENST00000367248 NDRG2Q9UN36 371 aaKnown RBP11.93□□□□□ -0.5
SYNE1-204ENST00000367248 HDCP19113 662 aa11.93□□□□□ -0.5
SYNE1-204ENST00000367248 CNGA2Q16280 664 aa11.93□□□□□ -0.5
SYNE1-204ENST00000367248 BMT2Q1RMZ1 405 aa11.93□□□□□ -0.5
SYNE1-204ENST00000367248 TTC39BQ5VTQ0 682 aaPredicted RBP11.93□□□□□ -0.5
SYNE1-204ENST00000367248 PPTC7Q8NI37 304 aa11.93□□□□□ -0.5
SYNE1-204ENST00000367248 CCDC138Q96M89 665 aa11.93□□□□□ -0.5
SYNE1-204ENST00000367248 UXTQ9UBK9 157 aaPredicted RBP11.93□□□□□ -0.5
SYNE1-204ENST00000367248 VCLP18206 1134 aa11.93□□□□□ -0.5
SYNE1-204ENST00000367248 GRM5P41594 1212 aa11.93□□□□□ -0.5
SYNE1-204ENST00000367248 RAP1GDS1P52306 607 aa11.93□□□□□ -0.5
SYNE1-204ENST00000367248 MARCOQ9UEW3 520 aaPredicted RBP11.93□□□□□ -0.5
SYNE1-204ENST00000367248 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.93□□□□□ -0.5
SYNE1-204ENST00000367248 ARL2BPQ9Y2Y0 163 aa11.93□□□□□ -0.5
SYNE1-204ENST00000367248 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.93□□□□□ -0.5
SYNE1-204ENST00000367248 ARIH2O95376 493 aa11.93□□□□□ -0.5
SYNE1-204ENST00000367248 CENPAP49450 140 aa11.93□□□□□ -0.5
SYNE1-204ENST00000367248 ERFP50548 548 aa11.93□□□□□ -0.5
SYNE1-204ENST00000367248 ZACNQ401N2 412 aa11.93□□□□□ -0.5
SYNE1-204ENST00000367248 PPP2R2DQ66LE6 453 aa11.93□□□□□ -0.5
SYNE1-204ENST00000367248 KDM4CQ9H3R0 1056 aa11.93□□□□□ -0.5
SYNE1-204ENST00000367248 DMGDHQ9UI17 866 aaKnown RBP11.93□□□□□ -0.5
SYNE1-204ENST00000367248 FAM50BQ9Y247 325 aa11.93□□□□□ -0.5
SYNE1-204ENST00000367248 H0Y3Z8 333 aa11.93□□□□□ -0.5
SYNE1-204ENST00000367248 KDM1AO60341 852 aa11.93□□□□□ -0.5
SYNE1-204ENST00000367248 POLR2EP19388 210 aaKnown RBP11.93□□□□□ -0.5
SYNE1-204ENST00000367248 ILDR2Q71H61 639 aa11.93□□□□□ -0.5
SYNE1-204ENST00000367248 SPG21Q9NZD8 308 aa11.93□□□□□ -0.5
SYNE1-204ENST00000367248 BTBD7Q9P203 1132 aa11.93□□□□□ -0.5
SYNE1-204ENST00000367248 VPS26AO75436 327 aa11.92□□□□□ -0.5
SYNE1-204ENST00000367248 SRP72O76094 671 aaKnown RBP11.92□□□□□ -0.5
SYNE1-204ENST00000367248 ADH1AP07327 375 aa11.92□□□□□ -0.5
SYNE1-204ENST00000367248 SERPINF2P08697 491 aa11.92□□□□□ -0.5
SYNE1-204ENST00000367248 RARGP13631 454 aa11.92□□□□□ -0.5
SYNE1-204ENST00000367248 FAM83EQ2M2I3 478 aa11.92□□□□□ -0.5
SYNE1-204ENST00000367248 MFSD7Q6UXD7 560 aa11.92□□□□□ -0.5
SYNE1-204ENST00000367248 SKA1Q96BD8 255 aa11.92□□□□□ -0.5
SYNE1-204ENST00000367248 SCLYQ96I15 445 aa11.92□□□□□ -0.5
SYNE1-204ENST00000367248 HSFY1Q96LI6 401 aa11.92□□□□□ -0.5
SYNE1-204ENST00000367248 SHCBP1LQ9BZQ2 653 aa11.92□□□□□ -0.5
SYNE1-204ENST00000367248 SELENONQ9NZV5 590 aa11.92□□□□□ -0.5
SYNE1-204ENST00000367248 PAX3P23760 479 aa11.92□□□□□ -0.5
SYNE1-204ENST00000367248 NCKAP1LP55160 1127 aa11.92□□□□□ -0.5
SYNE1-204ENST00000367248 PLIN5Q00G26 463 aa11.92□□□□□ -0.5
SYNE1-204ENST00000367248 MEA1Q16626 185 aa11.92□□□□□ -0.5
SYNE1-204ENST00000367248 HSP90AA5PQ58FG0 334 aa11.92□□□□□ -0.5
SYNE1-204ENST00000367248 SLAIN1Q8ND83 568 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms