RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 CMTR2Q8IYT2 770 aaKnown RBP4.23□□□□□ -1.73
USH2A-202ENST00000366942 CDK20Q8IZL9 346 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 GPD1LQ8N335 351 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 CLEC1AQ8NC01 280 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 OR9Q1Q8NGQ5 310 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 FAM71BQ8TC56 605 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 PLEKHO2Q8TD55 490 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 CD101Q93033 1021 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 MIEF2Q96C03 454 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 FBXL18Q96ME1 805 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 GFM1Q96RP9 751 aaKnown RBP4.23□□□□□ -1.73
USH2A-202ENST00000366942 CLCC1Q96S66 551 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 SERPINI1Q99574 410 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 ELAC2Q9BQ52 826 aaKnown RBP4.23□□□□□ -1.73
USH2A-202ENST00000366942 TMEM175Q9BSA9 504 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 RNF121Q9H920 327 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 WDR6Q9NNW5 1121 aaKnown RBP4.23□□□□□ -1.73
USH2A-202ENST00000366942 KIAA1522Q9P206 1035 aaPredicted RBP4.23□□□□□ -1.73
USH2A-202ENST00000366942 TRAF3IP3Q9Y228 551 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 HS3ST3A1Q9Y663 406 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 PNPLA7Q6ZV29 1317 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 DISP2A7MBM2 1401 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 RAD51CO43502 376 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 CIB2O75838 187 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 SYNGR4O95473 234 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 CATP04040 527 aaKnown RBP4.23□□□□□ -1.73
USH2A-202ENST00000366942 TUBBP07437 444 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 EIF3BP55884 814 aaKnown RBP4.23□□□□□ -1.73
USH2A-202ENST00000366942 RPS3AP61247 264 aaKnown RBP4.23□□□□□ -1.73
USH2A-202ENST00000366942 NSUN2Q08J23 767 aaKnown RBP eCLIP4.23□□□□□ -1.73
USH2A-202ENST00000366942 KRT72Q14CN4 511 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 KRT31Q15323 416 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 C8orf34Q49A92 452 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 HABP4Q5JVS0 413 aaKnown RBP4.23□□□□□ -1.73
USH2A-202ENST00000366942 ZDHHC20Q5W0Z9 365 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 NAPEPLDQ6IQ20 393 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 AHI1Q8N157 1196 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 SRFBP1Q8NEF9 429 aaKnown RBP4.23□□□□□ -1.73
USH2A-202ENST00000366942 PRR7Q8TB68 274 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 SH3RF3Q8TEJ3 882 aaPredicted RBP4.23□□□□□ -1.73
USH2A-202ENST00000366942 MR1Q95460 341 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 ARMC5Q96C12 935 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 PLEKHA8Q96JA3 519 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 TEKT5Q96M29 485 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 PANX3Q96QZ0 392 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 PNKPQ96T60 521 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 MYO1AQ9UBC5 1043 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 PPIEQ9UNP9 301 aaKnown RBP4.23□□□□□ -1.73
USH2A-202ENST00000366942 ZNF148Q9UQR1 794 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 SPEF1Q9Y4P9 236 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 HECW2Q9P2P5 1572 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 ZBTB22O15209 634 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 IMPDH2P12268 514 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 DIO3P55073 304 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 BEX3Q00994 111 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 GALNT18Q6P9A2 607 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 DARS2Q6PI48 645 aaKnown RBP4.23□□□□□ -1.73
USH2A-202ENST00000366942 SAPCD2Q86UD0 394 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 DCP2Q8IU60 420 aaKnown RBP4.23□□□□□ -1.73
USH2A-202ENST00000366942 GALNT13Q8IUC8 556 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 PPHLN1Q8NEY8 458 aaKnown RBP4.23□□□□□ -1.73
USH2A-202ENST00000366942 GAB3Q8WWW8 586 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 MYLIPQ8WY64 445 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 FAM3CQ92520 227 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 KCNH6Q9H252 994 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 DPP3Q9NY33 737 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 MAFFQ9ULX9 164 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 PLCL2Q9UPR0 1127 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 TRIM64A6NGJ6 449 aa4.22□□□□□ -1.73
USH2A-202ENST00000366942 WWP2O00308 870 aa4.22□□□□□ -1.73
USH2A-202ENST00000366942 PRKCEQ02156 737 aa4.22□□□□□ -1.73
USH2A-202ENST00000366942 EFEMP1Q12805 493 aa4.22□□□□□ -1.73
USH2A-202ENST00000366942 NME3Q13232 169 aa4.22□□□□□ -1.73
USH2A-202ENST00000366942 SLC9A5Q14940 896 aa4.22□□□□□ -1.73
USH2A-202ENST00000366942 ZC3H12BQ5HYM0 836 aaKnown RBP4.22□□□□□ -1.73
USH2A-202ENST00000366942 ABHD17BQ5VST6 288 aa4.22□□□□□ -1.73
USH2A-202ENST00000366942 SPOPLQ6IQ16 392 aa4.22□□□□□ -1.73
USH2A-202ENST00000366942 FAM180AQ6UWF9 173 aa4.22□□□□□ -1.73
USH2A-202ENST00000366942 DENND5BQ6ZUT9 1274 aa4.22□□□□□ -1.73
USH2A-202ENST00000366942 TXNRD3Q86VQ6 643 aa4.22□□□□□ -1.73
USH2A-202ENST00000366942 CACNA2D3Q8IZS8 1091 aa4.22□□□□□ -1.73
USH2A-202ENST00000366942 MIPOL1Q8TD10 442 aa4.22□□□□□ -1.73
USH2A-202ENST00000366942 ASZ1Q8WWH4 475 aa4.22□□□□□ -1.73
USH2A-202ENST00000366942 SLC30A2Q9BRI3 323 aa4.22□□□□□ -1.73
USH2A-202ENST00000366942 PHF7Q9BWX1 381 aaPredicted RBP4.22□□□□□ -1.73
USH2A-202ENST00000366942 EPN3Q9H201 632 aa4.22□□□□□ -1.73
USH2A-202ENST00000366942 CBX8Q9HC52 389 aa4.22□□□□□ -1.73
USH2A-202ENST00000366942 GPAMQ9HCL2 828 aa4.22□□□□□ -1.73
USH2A-202ENST00000366942 ARHGEF3Q9NR81 526 aa4.22□□□□□ -1.73
USH2A-202ENST00000366942 DNAJC28Q9NX36 388 aa4.22□□□□□ -1.73
USH2A-202ENST00000366942 SMPD4Q9NXE4 827 aa4.22□□□□□ -1.73
USH2A-202ENST00000366942 COQ6Q9Y2Z9 468 aa4.22□□□□□ -1.73
USH2A-202ENST00000366942 OR5K4A6NMS3 321 aa4.22□□□□□ -1.73
USH2A-202ENST00000366942 TMEM150CB9EJG8 249 aa4.22□□□□□ -1.73
USH2A-202ENST00000366942 CASQ2O14958 399 aaPredicted RBP4.22□□□□□ -1.73
USH2A-202ENST00000366942 SMIM24O75264 130 aa4.22□□□□□ -1.73
USH2A-202ENST00000366942 LPLP06858 475 aa4.22□□□□□ -1.73
USH2A-202ENST00000366942 MSL3P1P0C860 447 aa4.22□□□□□ -1.73
USH2A-202ENST00000366942 MLNP12872 115 aa4.22□□□□□ -1.73
USH2A-202ENST00000366942 HMOX2P30519 316 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms