RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 TADA3O75528 432 aa20.7■□□□□ 0.9
CLN3-205ENST00000359984 ZMYND10O75800 440 aa20.7■□□□□ 0.9
CLN3-205ENST00000359984 TBX18O95935 607 aa20.7■□□□□ 0.9
CLN3-205ENST00000359984 GBP1P32455 592 aa20.7■□□□□ 0.9
CLN3-205ENST00000359984 PAFAH1B1P43034 410 aa20.7■□□□□ 0.9
CLN3-205ENST00000359984 CXCR3P49682 368 aa20.7■□□□□ 0.9
CLN3-205ENST00000359984 ERMARDQ5T6L9 678 aa20.7■□□□□ 0.9
CLN3-205ENST00000359984 SEL1L2Q5TEA6 688 aa20.7■□□□□ 0.9
CLN3-205ENST00000359984 ANKS1BQ7Z6G8 1248 aa20.7■□□□□ 0.9
CLN3-205ENST00000359984 TSC1Q92574 1164 aa20.7■□□□□ 0.9
CLN3-205ENST00000359984 CCSER2Q9H7U1 834 aa20.7■□□□□ 0.9
CLN3-205ENST00000359984 TLE6Q9H808 572 aa20.7■□□□□ 0.9
CLN3-205ENST00000359984 STAU2Q9NUL3 570 aaKnown RBP eCLIP20.7■□□□□ 0.9
CLN3-205ENST00000359984 HCFC2Q9Y5Z7 792 aa20.7■□□□□ 0.9
CLN3-205ENST00000359984 C3orf70A6NLC5 250 aaPredicted RBP20.69■□□□□ 0.9
CLN3-205ENST00000359984 MDM4O15151 490 aa20.69■□□□□ 0.9
CLN3-205ENST00000359984 MSI1O43347 362 aaKnown RBP20.69■□□□□ 0.9
CLN3-205ENST00000359984 TLR5O60602 858 aa20.69■□□□□ 0.9
CLN3-205ENST00000359984 FGGP02679 453 aa20.69■□□□□ 0.9
CLN3-205ENST00000359984 CKAP4Q07065 602 aaKnown RBP20.69■□□□□ 0.9
CLN3-205ENST00000359984 LLGL1Q15334 1064 aa20.69■□□□□ 0.9
CLN3-205ENST00000359984 ZC3H12AQ5D1E8 599 aaKnown RBP20.69■□□□□ 0.9
CLN3-205ENST00000359984 C10orf120Q5SQS8 335 aa20.69■□□□□ 0.9
CLN3-205ENST00000359984 MFSD7Q6UXD7 560 aa20.69■□□□□ 0.9
CLN3-205ENST00000359984 TMEM150AQ86TG1 271 aa20.69■□□□□ 0.9
CLN3-205ENST00000359984 CCDC50Q8IVM0 306 aa20.69■□□□□ 0.9
CLN3-205ENST00000359984 ZNF276Q8N554 614 aa20.69■□□□□ 0.9
CLN3-205ENST00000359984 RBM41Q96IZ5 413 aaKnown RBP20.69■□□□□ 0.9
CLN3-205ENST00000359984 LRRC3Q9BY71 257 aa20.69■□□□□ 0.9
CLN3-205ENST00000359984 IL21Q9HBE4 155 aa20.69■□□□□ 0.9
CLN3-205ENST00000359984 OLA1Q9NTK5 396 aaKnown RBP20.69■□□□□ 0.9
CLN3-205ENST00000359984 PGRMC1O00264 195 aaKnown RBP20.69■□□□□ 0.9
CLN3-205ENST00000359984 CCL16O15467 120 aa20.69■□□□□ 0.9
CLN3-205ENST00000359984 RFPL2O75678 378 aa20.69■□□□□ 0.9
CLN3-205ENST00000359984 F11P03951 625 aa20.69■□□□□ 0.9
CLN3-205ENST00000359984 KDELR1P24390 212 aa20.69■□□□□ 0.9
CLN3-205ENST00000359984 PPP3CCP48454 512 aa20.69■□□□□ 0.9
CLN3-205ENST00000359984 ARSEP51690 589 aa20.69■□□□□ 0.9
CLN3-205ENST00000359984 EFEMP1Q12805 493 aa20.69■□□□□ 0.9
CLN3-205ENST00000359984 CA9Q16790 459 aa20.69■□□□□ 0.9
CLN3-205ENST00000359984 DUSP6Q16828 381 aa20.69■□□□□ 0.9
CLN3-205ENST00000359984 ODF2Q5BJF6 829 aa20.69■□□□□ 0.9
CLN3-205ENST00000359984 SND1Q7KZF4 910 aaKnown RBP eCLIP20.69■□□□□ 0.91e-7■■■□□ 15.8
CLN3-205ENST00000359984 HS6ST3Q8IZP7 471 aa20.69■□□□□ 0.9
CLN3-205ENST00000359984 KCTD6Q8NC69 237 aa20.69■□□□□ 0.9
CLN3-205ENST00000359984 HDAC7Q8WUI4 952 aa20.69■□□□□ 0.9
CLN3-205ENST00000359984 MAGEB5Q9BZ81 275 aa20.69■□□□□ 0.9
CLN3-205ENST00000359984 ANLNQ9NQW6 1124 aa20.69■□□□□ 0.9
CLN3-205ENST00000359984 TMPRSS4Q9NRS4 437 aa20.69■□□□□ 0.9
CLN3-205ENST00000359984 FZD10Q9ULW2 581 aa20.69■□□□□ 0.9
CLN3-205ENST00000359984 CD48P09326 243 aa20.68■□□□□ 0.9
CLN3-205ENST00000359984 ADRA1BP35368 520 aa20.68■□□□□ 0.9
CLN3-205ENST00000359984 NRIP1P48552 1158 aa20.68■□□□□ 0.9
CLN3-205ENST00000359984 SPOCD1Q6ZMY3 1216 aa20.68■□□□□ 0.9
CLN3-205ENST00000359984 TMC8Q8IU68 726 aa20.68■□□□□ 0.9
CLN3-205ENST00000359984 ELMOD1Q8N336 334 aa20.68■□□□□ 0.9
CLN3-205ENST00000359984 CEP112Q8N8E3 955 aa20.68■□□□□ 0.9
CLN3-205ENST00000359984 LRRN4CLQ8ND94 238 aa20.68■□□□□ 0.9
CLN3-205ENST00000359984 MRPL38Q96DV4 380 aaKnown RBP20.68■□□□□ 0.9
CLN3-205ENST00000359984 SERPINB11Q96P15 392 aa20.68■□□□□ 0.9
CLN3-205ENST00000359984 HERPUD2Q9BSE4 406 aa20.68■□□□□ 0.9
CLN3-205ENST00000359984 WDCPQ9H6R7 721 aa20.68■□□□□ 0.9
CLN3-205ENST00000359984 AP4E1Q9UPM8 1137 aa20.68■□□□□ 0.9
CLN3-205ENST00000359984 ATG2AQ2TAZ0 1938 aa20.67■□□□□ 0.9
CLN3-205ENST00000359984 MTCL1Q9Y4B5 1905 aaKnown RBP20.67■□□□□ 0.9
CLN3-205ENST00000359984 I6L893 689 aaPredicted RBP20.67■□□□□ 0.9
CLN3-205ENST00000359984 HOXA9P31269 272 aa20.67■□□□□ 0.9
CLN3-205ENST00000359984 RBM10P98175 930 aaKnown RBP20.67■□□□□ 0.9
CLN3-205ENST00000359984 LONRF2Q1L5Z9 754 aa20.67■□□□□ 0.9
CLN3-205ENST00000359984 HECTD3Q5T447 861 aa20.67■□□□□ 0.9
CLN3-205ENST00000359984 ZNF572Q7Z3I7 529 aaPredicted RBP20.67■□□□□ 0.9
CLN3-205ENST00000359984 SLC13A5Q86YT5 568 aaPredicted RBP20.67■□□□□ 0.9
CLN3-205ENST00000359984 NTAN1Q96AB6 310 aa20.67■□□□□ 0.9
CLN3-205ENST00000359984 MARCH2Q9P0N8 246 aa20.67■□□□□ 0.9
CLN3-205ENST00000359984 SLU7O95391 586 aaKnown RBP20.67■□□□□ 0.9
CLN3-205ENST00000359984 CDKN2BP42772 138 aa20.67■□□□□ 0.9
CLN3-205ENST00000359984 CDH6P55285 790 aa20.67■□□□□ 0.9
CLN3-205ENST00000359984 COPS2P61201 443 aa20.67■□□□□ 0.9
CLN3-205ENST00000359984 MLLT1Q03111 559 aaPredicted RBP20.67■□□□□ 0.9
CLN3-205ENST00000359984 PSTKQ8IV42 348 aaKnown RBP20.67■□□□□ 0.9
CLN3-205ENST00000359984 RNF34Q969K3 372 aa20.67■□□□□ 0.9
CLN3-205ENST00000359984 CDK5RAP1Q96SZ6 601 aaKnown RBP20.67■□□□□ 0.9
CLN3-205ENST00000359984 CORO1BQ9BR76 489 aa20.67■□□□□ 0.9
CLN3-205ENST00000359984 HEMGNQ9BXL5 484 aa20.67■□□□□ 0.9
CLN3-205ENST00000359984 OSBPL8Q9BZF1 889 aa20.67■□□□□ 0.9
CLN3-205ENST00000359984 DHX35Q9H5Z1 703 aaKnown RBP20.67■□□□□ 0.9
CLN3-205ENST00000359984 ZNF576Q9H609 170 aa20.67■□□□□ 0.9
CLN3-205ENST00000359984 PCDH18Q9HCL0 1135 aa20.67■□□□□ 0.9
CLN3-205ENST00000359984 DPP7Q9UHL4 492 aa20.67■□□□□ 0.9
CLN3-205ENST00000359984 RASAL2Q9UJF2 1139 aa20.67■□□□□ 0.9
CLN3-205ENST00000359984 TCRBV7S2A1N4TA0A589 114 aa20.66■□□□□ 0.9
CLN3-205ENST00000359984 HNRNPA1P09651 372 aaKnown RBP eCLIP20.66■□□□□ 0.9
CLN3-205ENST00000359984 L1CAMP32004 1257 aa20.66■□□□□ 0.9
CLN3-205ENST00000359984 AIF1P55008 147 aa20.66■□□□□ 0.9
CLN3-205ENST00000359984 TAZQ16635 292 aa20.66■□□□□ 0.9
CLN3-205ENST00000359984 PABPC1LQ4VXU2 614 aaKnown RBP20.66■□□□□ 0.9
CLN3-205ENST00000359984 GAREM2Q75VX8 874 aa20.66■□□□□ 0.9
CLN3-205ENST00000359984 ADAT2Q7Z6V5 191 aaKnown RBP20.66■□□□□ 0.9
CLN3-205ENST00000359984 TADA2BQ86TJ2 420 aa20.66■□□□□ 0.9
CLN3-205ENST00000359984 MIB1Q86YT6 1006 aa20.66■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms