RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 BUB1BO60566 1050 aaPredicted RBP2.47□□□□□ -2.01
VPS54-202ENST00000354504 GSRP00390 522 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 AMY2AP04746 511 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 AMY2BP19961 511 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 GALCP54803 685 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 POLR2FP61218 127 aaKnown RBP2.47□□□□□ -2.01
VPS54-202ENST00000354504 NOMO3P69849 1222 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 INCA1Q0VD86 236 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 DHX8Q14562 1220 aaKnown RBP2.47□□□□□ -2.01
VPS54-202ENST00000354504 DRAP1Q14919 205 aaPredicted RBP2.47□□□□□ -2.01
VPS54-202ENST00000354504 SNRNP35Q16560 246 aaKnown RBP2.47□□□□□ -2.01
VPS54-202ENST00000354504 RALGPS1Q5JS13 557 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 SNRNP48Q6IEG0 339 aaKnown RBP2.47□□□□□ -2.01
VPS54-202ENST00000354504 C6orf89Q6UWU4 347 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 RNF207Q6ZRF8 634 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 PAQR9Q6ZVX9 377 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 USP50Q70EL3 339 aaPredicted RBP2.47□□□□□ -2.01
VPS54-202ENST00000354504 RRAGAQ7L523 313 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 HAUS6Q7Z4H7 955 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 ZAR1Q86SH2 424 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 KIF18BQ86Y91 864 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 NIPA2Q8N8Q9 360 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 ARRDC4Q8NCT1 418 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 SHCBP1Q8NEM2 672 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 CHST13Q8NET6 341 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 CHTF18Q8WVB6 975 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 UBE2Q2Q8WVN8 375 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 KBTBD7Q8WVZ9 684 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 P2RY11Q96G91 374 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 CALML4Q96GE6 196 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 RMDN3Q96TC7 470 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 KCNJ15Q99712 375 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 CRACR2AQ9BSW2 395 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 TEKT3Q9BXF9 490 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 CAAP1Q9H8G2 361 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 ANLNQ9NQW6 1124 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 MTMR10Q9NXD2 777 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 ZIM2Q9NZV7 527 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 PCYOX1Q9UHG3 505 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 GRID1Q9ULK0 1009 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 DNM3Q9UQ16 869 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 PLAAQ9Y263 795 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 SIT1Q9Y3P8 196 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 PCDHA11Q9Y5I1 949 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 ADAMTS20P59510 1910 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 BTBD19C9JJ37 291 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 KIAA0391O15091 583 aaKnown RBP2.47□□□□□ -2.01
VPS54-202ENST00000354504 AKAP10O43572 662 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 GAS2O43903 313 aaKnown RBP2.47□□□□□ -2.01
VPS54-202ENST00000354504 PCDHGA12O60330 932 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 PPFIA2O75334 1257 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 PEX14O75381 377 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 PPM1BO75688 479 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 VNN2O95498 520 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 ASS1P00966 412 aaKnown RBP2.47□□□□□ -2.01
VPS54-202ENST00000354504 ESR1P03372 595 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 PRKCGP05129 697 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 LINC00271P0C7V0 271 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 VAV1P15498 845 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 CYP11B1P15538 503 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 ATP2A2P16615 1042 aaKnown RBP2.47□□□□□ -2.01
VPS54-202ENST00000354504 SFNP31947 248 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 HSPA9P38646 679 aaKnown RBP2.47□□□□□ -2.01
VPS54-202ENST00000354504 MAGEA3P43357 314 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 CARSP49589 748 aaKnown RBP2.47□□□□□ -2.01
VPS54-202ENST00000354504 AKAP17AQ02040 695 aaKnown RBP2.47□□□□□ -2.01
VPS54-202ENST00000354504 CLEC16AQ2KHT3 1053 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 HSF5Q4G112 596 aaPredicted RBP2.47□□□□□ -2.01
VPS54-202ENST00000354504 HERC4Q5GLZ8 1057 aaPredicted RBP2.47□□□□□ -2.01
VPS54-202ENST00000354504 ZNF569Q5MCW4 686 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 SPOPLQ6IQ16 392 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 C17orf99Q6UX52 265 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 ZNF534Q76KX8 674 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 CLRN3Q8NCR9 226 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 SLC35G2Q8TBE7 412 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 PIWIL2Q8TC59 973 aaKnown RBP2.47□□□□□ -2.01
VPS54-202ENST00000354504 RIN2Q8WYP3 895 aaPredicted RBP2.47□□□□□ -2.01
VPS54-202ENST00000354504 NT5C3BQ969T7 300 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 JAKMIP2Q96AA8 810 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 TIFAQ96CG3 184 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 SLC39A13Q96H72 371 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 SLC2A13Q96QE2 648 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 PEBP4Q96S96 227 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 NAPGQ99747 312 aaPredicted RBP2.47□□□□□ -2.01
VPS54-202ENST00000354504 RTP3Q9BQQ7 232 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 JPH2Q9BR39 696 aaPredicted RBP2.47□□□□□ -2.01
VPS54-202ENST00000354504 PLCD4Q9BRC7 762 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 G6PC3Q9BUM1 346 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 TEX13BQ9BXU2 312 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 PDZD7Q9H5P4 517 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 IPPKQ9H8X2 491 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 SMURF1Q9HCE7 757 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 PRDM5Q9NQX1 630 aaPredicted RBP2.47□□□□□ -2.01
VPS54-202ENST00000354504 HOMER2Q9NSB8 354 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 INTS7Q9NVH2 962 aaKnown RBP2.47□□□□□ -2.01
VPS54-202ENST00000354504 ERVK13-1Q9NX77 482 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 GCNT4Q9P109 453 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 ZMYND8Q9ULU4 1186 aaPredicted RBP2.47□□□□□ -2.01
VPS54-202ENST00000354504 R3HDM2Q9Y2K5 976 aaKnown RBP2.47□□□□□ -2.01
VPS54-202ENST00000354504 LUC7L2Q9Y383 392 aaKnown RBP2.47□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms