RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 UNCXA6NJT0 531 aa22.92■■□□□ 1.26
UPF3A-201ENST00000351487 ADCY6O43306 1168 aa22.92■■□□□ 1.26
UPF3A-201ENST00000351487 HNRNPCL1O60812 293 aaKnown RBP22.92■■□□□ 1.26
UPF3A-201ENST00000351487 ATXN1P54253 815 aaKnown RBP22.92■■□□□ 1.26
UPF3A-201ENST00000351487 CTC1Q2NKJ3 1217 aa22.92■■□□□ 1.26
UPF3A-201ENST00000351487 TAF1BQ53T94 588 aaPredicted RBP22.92■■□□□ 1.26
UPF3A-201ENST00000351487 LGSNQ5TDP6 509 aa22.92■■□□□ 1.26
UPF3A-201ENST00000351487 UNC5AQ6ZN44 842 aa22.92■■□□□ 1.26
UPF3A-201ENST00000351487 STRADAQ7RTN6 431 aa22.92■■□□□ 1.26
UPF3A-201ENST00000351487 LIMS2Q7Z4I7 341 aa22.92■■□□□ 1.26
UPF3A-201ENST00000351487 CLNKQ7Z7G1 428 aa22.92■■□□□ 1.26
UPF3A-201ENST00000351487 C7orf31Q8N865 590 aa22.92■■□□□ 1.26
UPF3A-201ENST00000351487 RFWD2Q8NHY2 731 aa22.92■■□□□ 1.26
UPF3A-201ENST00000351487 SIGLEC10Q96LC7 697 aa22.92■■□□□ 1.26
UPF3A-201ENST00000351487 HSFY1Q96LI6 401 aa22.92■■□□□ 1.26
UPF3A-201ENST00000351487 ZNF560Q96MR9 790 aa22.92■■□□□ 1.26
UPF3A-201ENST00000351487 KCTD15Q96SI1 283 aaPredicted RBP22.92■■□□□ 1.26
UPF3A-201ENST00000351487 TINF2Q9BSI4 451 aa22.92■■□□□ 1.26
UPF3A-201ENST00000351487 SLC5A4Q9NY91 659 aa22.92■■□□□ 1.26
UPF3A-201ENST00000351487 USP3Q9Y6I4 520 aa22.92■■□□□ 1.26
UPF3A-201ENST00000351487 ADORA2BP29275 332 aa22.92■■□□□ 1.26
UPF3A-201ENST00000351487 AXLP30530 894 aa22.92■■□□□ 1.26
UPF3A-201ENST00000351487 SERPINB4P48594 390 aa22.92■■□□□ 1.26
UPF3A-201ENST00000351487 SEMA5AQ13591 1074 aa22.92■■□□□ 1.26
UPF3A-201ENST00000351487 DPY19L2Q6NUT2 758 aa22.92■■□□□ 1.26
UPF3A-201ENST00000351487 SRPK1Q96SB4 655 aaKnown RBP22.92■■□□□ 1.26
UPF3A-201ENST00000351487 TRIM6Q9C030 488 aaPredicted RBP22.92■■□□□ 1.26
UPF3A-201ENST00000351487 SMYD2Q9NRG4 433 aa22.92■■□□□ 1.26
UPF3A-201ENST00000351487 LNPEPQ9UIQ6 1025 aa22.92■■□□□ 1.26
UPF3A-201ENST00000351487 ZNF236Q9UL36 1845 aa22.92■■□□□ 1.26
UPF3A-201ENST00000351487 KPNA7A9QM74 516 aa22.91■■□□□ 1.26
UPF3A-201ENST00000351487 COPEO14579 308 aa22.91■■□□□ 1.26
UPF3A-201ENST00000351487 F2P00734 622 aa22.91■■□□□ 1.26
UPF3A-201ENST00000351487 MAP2K2P36507 400 aa22.91■■□□□ 1.26
UPF3A-201ENST00000351487 PNPLA4P41247 253 aa22.91■■□□□ 1.26
UPF3A-201ENST00000351487 OVGP1Q12889 678 aa22.91■■□□□ 1.26
UPF3A-201ENST00000351487 NCBP2-AS2Q69YL0 99 aa22.91■■□□□ 1.26
UPF3A-201ENST00000351487 KCNT2Q6UVM3 1135 aa22.91■■□□□ 1.26
UPF3A-201ENST00000351487 GSDMBQ8TAX9 411 aa22.91■■□□□ 1.26
UPF3A-201ENST00000351487 STAMBPL1Q96FJ0 436 aa22.91■■□□□ 1.26
UPF3A-201ENST00000351487 OLFM3Q96PB7 478 aa22.91■■□□□ 1.26
UPF3A-201ENST00000351487 TSPAN18Q96SJ8 248 aa22.91■■□□□ 1.26
UPF3A-201ENST00000351487 EBNA1BP2Q99848 306 aaKnown RBP22.91■■□□□ 1.26
UPF3A-201ENST00000351487 XAB2Q9HCS7 855 aaKnown RBP22.91■■□□□ 1.26
UPF3A-201ENST00000351487 RCOR3Q9P2K3 495 aaPredicted RBP22.91■■□□□ 1.26
UPF3A-201ENST00000351487 L3MBTL1Q9Y468 752 aa22.91■■□□□ 1.26
UPF3A-201ENST00000351487 FAM159BA6NKW6 160 aa22.9■■□□□ 1.26
UPF3A-201ENST00000351487 SMIM10L2AP0DMW4 78 aa22.9■■□□□ 1.26
UPF3A-201ENST00000351487 SMIM10L2BP0DMW5 78 aa22.9■■□□□ 1.26
UPF3A-201ENST00000351487 LCP1P13796 627 aa22.9■■□□□ 1.26
UPF3A-201ENST00000351487 GNL1P36915 607 aaPredicted RBP22.9■■□□□ 1.26
UPF3A-201ENST00000351487 XKR4Q5GH76 650 aa22.9■■□□□ 1.26
UPF3A-201ENST00000351487 MTDHQ86UE4 582 aaKnown RBP22.9■■□□□ 1.26
UPF3A-201ENST00000351487 CCDC185Q8N715 623 aa22.9■■□□□ 1.26
UPF3A-201ENST00000351487 LRRN4Q8WUT4 740 aa22.9■■□□□ 1.26
UPF3A-201ENST00000351487 TTC17Q96AE7 1141 aa22.9■■□□□ 1.26
UPF3A-201ENST00000351487 MTBPQ96DY7 904 aa22.9■■□□□ 1.26
UPF3A-201ENST00000351487 ALG13Q9NP73 1137 aaKnown RBP22.9■■□□□ 1.26
UPF3A-201ENST00000351487 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP22.9■■□□□ 1.26
UPF3A-201ENST00000351487 DTLQ9NZJ0 730 aa22.9■■□□□ 1.26
UPF3A-201ENST00000351487 DCTN4Q9UJW0 460 aa22.9■■□□□ 1.26
UPF3A-201ENST00000351487 NUMBLQ9Y6R0 609 aa22.9■■□□□ 1.26
UPF3A-201ENST00000351487 CCL15-CCL14A0A0B4J2E2 113 aa22.9■■□□□ 1.26
UPF3A-201ENST00000351487 SPTLC1O15269 473 aa22.9■■□□□ 1.26
UPF3A-201ENST00000351487 CBX6O95503 412 aa22.9■■□□□ 1.26
UPF3A-201ENST00000351487 PDGFRBP09619 1106 aa22.9■■□□□ 1.26
UPF3A-201ENST00000351487 LMO2P25791 158 aa22.9■■□□□ 1.26
UPF3A-201ENST00000351487 GTF2A2P52657 109 aa22.9■■□□□ 1.26
UPF3A-201ENST00000351487 CCL15Q16663 113 aa22.9■■□□□ 1.26
UPF3A-201ENST00000351487 HEATR6Q6AI08 1181 aaKnown RBP22.9■■□□□ 1.26
UPF3A-201ENST00000351487 ZNF449Q6P9G9 518 aa22.9■■□□□ 1.26
UPF3A-201ENST00000351487 CDHR3Q6ZTQ4 885 aa22.9■■□□□ 1.26
UPF3A-201ENST00000351487 ANKRD23Q86SG2 305 aa22.9■■□□□ 1.26
UPF3A-201ENST00000351487 DNAI2Q9GZS0 605 aa22.9■■□□□ 1.26
UPF3A-201ENST00000351487 IQCGQ9H095 443 aaKnown RBP22.9■■□□□ 1.26
UPF3A-201ENST00000351487 NOP53Q9NZM5 478 aaKnown RBP22.9■■□□□ 1.26
UPF3A-201ENST00000351487 SMIM28A0A1B0GU29 152 aa22.89■■□□□ 1.26
UPF3A-201ENST00000351487 RFPL1O75677 317 aa22.89■■□□□ 1.26
UPF3A-201ENST00000351487 KCNE1P15382 129 aa22.89■■□□□ 1.26
UPF3A-201ENST00000351487 BGNP21810 368 aa22.89■■□□□ 1.26
UPF3A-201ENST00000351487 AKAP5P24588 427 aa22.89■■□□□ 1.26
UPF3A-201ENST00000351487 BRI3BPQ8WY22 251 aa22.89■■□□□ 1.26
UPF3A-201ENST00000351487 TLE6Q9H808 572 aa22.89■■□□□ 1.26
UPF3A-201ENST00000351487 PRDM16Q9HAZ2 1276 aa22.89■■□□□ 1.26
UPF3A-201ENST00000351487 KCNK13Q9HB14 408 aa22.89■■□□□ 1.26
UPF3A-201ENST00000351487 PLLPQ9Y342 182 aa22.89■■□□□ 1.26
UPF3A-201ENST00000351487 HACD1B0YJ81 288 aa22.89■■□□□ 1.25
UPF3A-201ENST00000351487 XPOTO43592 962 aaKnown RBP22.89■■□□□ 1.25
UPF3A-201ENST00000351487 DNAJC6O75061 913 aa22.89■■□□□ 1.25
UPF3A-201ENST00000351487 DGKIO75912 1065 aa22.89■■□□□ 1.25
UPF3A-201ENST00000351487 KRT38O76015 456 aa22.89■■□□□ 1.25
UPF3A-201ENST00000351487 DLDP09622 509 aaKnown RBP22.89■■□□□ 1.25
UPF3A-201ENST00000351487 CSH1P0DML2 217 aa22.89■■□□□ 1.25
UPF3A-201ENST00000351487 CSH2P0DML3 217 aa22.89■■□□□ 1.25
UPF3A-201ENST00000351487 MATKP42679 507 aa22.89■■□□□ 1.25
UPF3A-201ENST00000351487 EFHC1Q5JVL4 640 aa22.89■■□□□ 1.25
UPF3A-201ENST00000351487 CYS1Q717R9 158 aa22.89■■□□□ 1.25
UPF3A-201ENST00000351487 PSTKQ8IV42 348 aaKnown RBP22.89■■□□□ 1.25
UPF3A-201ENST00000351487 SLC2A14Q8TDB8 520 aa22.89■■□□□ 1.25
UPF3A-201ENST00000351487 TBC1D10AQ9BXI6 508 aa22.89■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms