RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 RSL24D1Q9UHA3 163 aaKnown RBP7.02□□□□□ -1.29
VPS39-202ENST00000348544 ZNHIT2Q9UHR6 403 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 PAIP2BQ9ULR5 123 aaKnown RBP7.02□□□□□ -1.29
VPS39-202ENST00000348544 RNF11Q9Y3C5 154 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 NUB1Q9Y5A7 615 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 RGPD3A6NKT7 1758 aaPredicted RBP7.02□□□□□ -1.29
VPS39-202ENST00000348544 RGPD4Q7Z3J3 1758 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 ZNF541Q9H0D2 1346 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 ZNF831Q5JPB2 1677 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 RIMBP2O15034 1052 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 DCXO43602 365 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 FAM189A1O60320 539 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 LRCH4O75427 683 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 TRPA1O75762 1119 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 TFPTP0C1Z6 253 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 PORP16435 677 aaPredicted RBP7.02□□□□□ -1.29
VPS39-202ENST00000348544 MSX2P35548 267 aaPredicted RBP7.02□□□□□ -1.29
VPS39-202ENST00000348544 QARSP47897 775 aaKnown RBP7.02□□□□□ -1.29
VPS39-202ENST00000348544 CDK9P50750 372 aaKnown RBP7.02□□□□□ -1.29
VPS39-202ENST00000348544 CCR3P51677 355 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 CLCN2P51788 898 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 CLDN10P78369 228 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 PIGHQ14442 188 aaPredicted RBP7.02□□□□□ -1.29
VPS39-202ENST00000348544 ADRM1Q16186 407 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 RARS2Q5T160 578 aaKnown RBP7.02□□□□□ -1.29
VPS39-202ENST00000348544 FAXCQ5TGI0 409 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 TAS1R3Q7RTX0 852 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 PATL1Q86TB9 770 aaKnown RBP7.02□□□□□ -1.29
VPS39-202ENST00000348544 CAND1Q86VP6 1230 aaKnown RBP7.02□□□□□ -1.29
VPS39-202ENST00000348544 GALNT4Q8N4A0 578 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 WDTC1Q8N5D0 677 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 LZTR1Q8N653 840 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 DDI1Q8WTU0 396 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 ARHGEF1Q92888 912 aaKnown RBP7.02□□□□□ -1.29
VPS39-202ENST00000348544 TEKT1Q969V4 418 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 STN1Q9H668 368 aaKnown RBP7.02□□□□□ -1.29
VPS39-202ENST00000348544 COPS7BQ9H9Q2 264 aaPredicted RBP7.02□□□□□ -1.29
VPS39-202ENST00000348544 IFT122Q9HBG6 1241 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 PFDN4Q9NQP4 134 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 TJP2Q9UDY2 1190 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 ZC3H7BQ9UGR2 993 aaKnown RBP7.02□□□□□ -1.29
VPS39-202ENST00000348544 PADI4Q9UM07 663 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 CNTN6Q9UQ52 1028 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 EFR3BQ9Y2G0 817 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 WDR37Q9Y2I8 494 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 AFG3L2Q9Y4W6 797 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 HNRNPDLO14979 420 aaKnown RBP7.01□□□□□ -1.29
VPS39-202ENST00000348544 ADCY6O43306 1168 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 CAPNS1P04632 268 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 PRKCGP05129 697 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 CPA3P15088 417 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 NELFEP18615 380 aaKnown RBP7.01□□□□□ -1.29
VPS39-202ENST00000348544 XRCC1P18887 633 aaPredicted RBP7.01□□□□□ -1.29
VPS39-202ENST00000348544 NCF2P19878 526 aaPredicted RBP7.01□□□□□ -1.29
VPS39-202ENST00000348544 RFC1P35251 1148 aaPredicted RBP7.01□□□□□ -1.29
VPS39-202ENST00000348544 ALDH3B2P48448 385 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 ZNF132P52740 706 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 THOP1P52888 689 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 OXCT1P55809 520 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 PPP6R3Q5H9R7 873 aaPredicted RBP7.01□□□□□ -1.29
VPS39-202ENST00000348544 UNC5AQ6ZN44 842 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 TMEM179Q6ZVK1 233 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 CHERPQ8IWX8 916 aaKnown RBP7.01□□□□□ -1.29
VPS39-202ENST00000348544 JOSD2Q8TAC2 188 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 PPP1R14CQ8TAE6 165 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 PPP4R1Q8TF05 950 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 KBTBD7Q8WVZ9 684 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 CMTM5Q96DZ9 223 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 LRGUKQ96M69 825 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 RANBP9Q96S59 729 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 KCNK16Q96T55 309 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 PKP2Q99959 881 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 FRMD8P1Q9BZ68 369 aaPredicted RBP7.01□□□□□ -1.29
VPS39-202ENST00000348544 TUT1Q9H6E5 874 aaKnown RBP7.01□□□□□ -1.29
VPS39-202ENST00000348544 KMT5AQ9NQR1 393 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 TBC1D22BQ9NU19 505 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 DNAJC28Q9NX36 388 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 STK39Q9UEW8 545 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 CNTNAP2Q9UHC6 1331 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.01□□□□□ -1.29
VPS39-202ENST00000348544 H0YIN7 160 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 APOC4-APOC2K7ER74 178 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 SERPINB7O75635 380 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 LYPLA2O95372 231 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 APOEP02649 317 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 APOC2P02655 101 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 ALDH2P05091 517 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 CALB1P05937 261 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 ALOX15P16050 662 aaPredicted RBP7.01□□□□□ -1.29
VPS39-202ENST00000348544 ZNF23P17027 643 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 PTPN1P18031 435 aaKnown RBP7.01□□□□□ -1.29
VPS39-202ENST00000348544 TNNI1P19237 187 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 ACAT1P24752 427 aaKnown RBP7.01□□□□□ -1.29
VPS39-202ENST00000348544 EPHA3P29320 983 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 GMPRP36959 345 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 MLH1P40692 756 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 GABRB2P47870 512 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 PSMD7P51665 324 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 NLRP11P59045 1033 aaKnown RBP7.01□□□□□ -1.29
VPS39-202ENST00000348544 NAA20P61599 178 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms