RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 STK38LQ9Y2H1 464 aa20.07■□□□□ 0.8
COL9A3-201ENST00000343916 MYO18AQ92614 2054 aaKnown RBP20.06■□□□□ 0.8
COL9A3-201ENST00000343916 UGT1A9O60656 530 aa20.06■□□□□ 0.8
COL9A3-201ENST00000343916 BEST1O76090 585 aa20.06■□□□□ 0.8
COL9A3-201ENST00000343916 TAF6P49848 677 aa20.06■□□□□ 0.8
COL9A3-201ENST00000343916 ADAM17P78536 824 aa20.06■□□□□ 0.8
COL9A3-201ENST00000343916 CCL14Q16627 93 aa20.06■□□□□ 0.8
COL9A3-201ENST00000343916 OSTM1Q86WC4 334 aa20.06■□□□□ 0.8
COL9A3-201ENST00000343916 ADGRF2Q8IZF7 708 aa20.06■□□□□ 0.8
COL9A3-201ENST00000343916 MPP5Q8N3R9 675 aa20.06■□□□□ 0.8
COL9A3-201ENST00000343916 C10orf82Q8WW14 230 aa20.06■□□□□ 0.8
COL9A3-201ENST00000343916 LRRC37BQ96QE4 947 aa20.06■□□□□ 0.8
COL9A3-201ENST00000343916 UGT1A7Q9HAW7 530 aa20.06■□□□□ 0.8
COL9A3-201ENST00000343916 UGT1A10Q9HAW8 530 aa20.06■□□□□ 0.8
COL9A3-201ENST00000343916 UGT1A8Q9HAW9 530 aa20.06■□□□□ 0.8
COL9A3-201ENST00000343916 IPPQ9Y573 584 aa20.06■□□□□ 0.8
COL9A3-201ENST00000343916 USH1CQ9Y6N9 552 aa20.06■□□□□ 0.8
COL9A3-201ENST00000343916 TM9SF1O15321 606 aa20.05■□□□□ 0.8
COL9A3-201ENST00000343916 ADIGQ0VDE8 80 aa20.05■□□□□ 0.8
COL9A3-201ENST00000343916 PLEKHG4Q58EX7 1191 aa20.05■□□□□ 0.8
COL9A3-201ENST00000343916 SLC45A4Q5BKX6 768 aa20.05■□□□□ 0.8
COL9A3-201ENST00000343916 SPRYD7Q5W111 196 aa20.05■□□□□ 0.8
COL9A3-201ENST00000343916 ZNF534Q76KX8 674 aa20.05■□□□□ 0.8
COL9A3-201ENST00000343916 PIGZQ86VD9 579 aa20.05■□□□□ 0.8
COL9A3-201ENST00000343916 DEFB106AQ8N104 65 aa20.05■□□□□ 0.8
COL9A3-201ENST00000343916 VPS52Q8N1B4 723 aa20.05■□□□□ 0.8
COL9A3-201ENST00000343916 ZNF560Q96MR9 790 aa20.05■□□□□ 0.8
COL9A3-201ENST00000343916 NOD2Q9HC29 1040 aa20.05■□□□□ 0.8
COL9A3-201ENST00000343916 SMYD2Q9NRG4 433 aa20.05■□□□□ 0.8
COL9A3-201ENST00000343916 GDAP2Q9NXN4 497 aa20.05■□□□□ 0.8
COL9A3-201ENST00000343916 DTLQ9NZJ0 730 aa20.05■□□□□ 0.8
COL9A3-201ENST00000343916 MAD1L1Q9Y6D9 718 aa20.05■□□□□ 0.8
COL9A3-201ENST00000343916 SLC15A5A6NIM6 579 aa20.05■□□□□ 0.8
COL9A3-201ENST00000343916 A8MUI8 341 aa20.05■□□□□ 0.8
COL9A3-201ENST00000343916 UNC5CO95185 931 aa20.05■□□□□ 0.8
COL9A3-201ENST00000343916 MYL3P08590 195 aa20.05■□□□□ 0.8
COL9A3-201ENST00000343916 EZRP15311 586 aaKnown RBP20.05■□□□□ 0.8
COL9A3-201ENST00000343916 RABGGTBP53611 331 aa20.05■□□□□ 0.8
COL9A3-201ENST00000343916 LILRA4P59901 499 aa20.05■□□□□ 0.8
COL9A3-201ENST00000343916 NCBP2-AS2Q69YL0 99 aa20.05■□□□□ 0.8
COL9A3-201ENST00000343916 SH2D5Q6ZV89 423 aa20.05■□□□□ 0.8
COL9A3-201ENST00000343916 ASRGL1Q7L266 308 aa20.05■□□□□ 0.8
COL9A3-201ENST00000343916 VSIG1Q86XK7 387 aa20.05■□□□□ 0.8
COL9A3-201ENST00000343916 CDKL3Q8IVW4 592 aaPredicted RBP20.05■□□□□ 0.8
COL9A3-201ENST00000343916 ALKBH8Q96BT7 664 aaKnown RBP20.05■□□□□ 0.8
COL9A3-201ENST00000343916 ZFP42Q96MM3 310 aa20.05■□□□□ 0.8
COL9A3-201ENST00000343916 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP20.05■□□□□ 0.8
COL9A3-201ENST00000343916 DCTN4Q9UJW0 460 aa20.05■□□□□ 0.8
COL9A3-201ENST00000343916 DCAF8L1A6NGE4 600 aa20.04■□□□□ 0.8
COL9A3-201ENST00000343916 TARSP26639 723 aaKnown RBP20.04■□□□□ 0.8
COL9A3-201ENST00000343916 CCDC15Q0P6D6 951 aa20.04■□□□□ 0.8
COL9A3-201ENST00000343916 SETDB1Q15047 1291 aa20.04■□□□□ 0.8
COL9A3-201ENST00000343916 B3GALNT2Q8NCR0 500 aa20.04■□□□□ 0.8
COL9A3-201ENST00000343916 SMG8Q8ND04 991 aaKnown RBP20.04■□□□□ 0.8
COL9A3-201ENST00000343916 LGMNQ99538 433 aa20.04■□□□□ 0.8
COL9A3-201ENST00000343916 MANSC1Q9H8J5 431 aa20.04■□□□□ 0.8
COL9A3-201ENST00000343916 CYLDQ9NQC7 956 aa20.04■□□□□ 0.8
COL9A3-201ENST00000343916 ARHGEF3Q9NR81 526 aa20.04■□□□□ 0.8
COL9A3-201ENST00000343916 TRIM49D1C9J1S8 452 aa20.04■□□□□ 0.8
COL9A3-201ENST00000343916 HUS1O60921 280 aa20.04■□□□□ 0.8
COL9A3-201ENST00000343916 SPAG6O75602 509 aa20.04■□□□□ 0.8
COL9A3-201ENST00000343916 RPL34P49207 117 aaKnown RBP20.04■□□□□ 0.8
COL9A3-201ENST00000343916 PSEN2P49810 448 aa20.04■□□□□ 0.8
COL9A3-201ENST00000343916 NDUFV1P49821 464 aa20.04■□□□□ 0.8
COL9A3-201ENST00000343916 DCAF6Q58WW2 860 aa20.04■□□□□ 0.8
COL9A3-201ENST00000343916 TRMT10BQ6PF06 316 aaKnown RBP20.04■□□□□ 0.8
COL9A3-201ENST00000343916 UNC5AQ6ZN44 842 aa20.04■□□□□ 0.8
COL9A3-201ENST00000343916 CDHR3Q6ZTQ4 885 aa20.04■□□□□ 0.8
COL9A3-201ENST00000343916 SLC26A11Q86WA9 606 aa20.04■□□□□ 0.8
COL9A3-201ENST00000343916 LRRC6Q86X45 466 aa20.04■□□□□ 0.8
COL9A3-201ENST00000343916 TTC17Q96AE7 1141 aa20.04■□□□□ 0.8
COL9A3-201ENST00000343916 TMEM237Q96Q45 408 aa20.04■□□□□ 0.8
COL9A3-201ENST00000343916 PDCD11Q14690 1871 aaKnown RBP20.04■□□□□ 0.8
COL9A3-201ENST00000343916 MEIS3P2A8K0S8 358 aa20.03■□□□□ 0.8
COL9A3-201ENST00000343916 ZNF865P0CJ78 1059 aaPredicted RBP20.03■□□□□ 0.8
COL9A3-201ENST00000343916 CCNB1P14635 433 aa20.03■□□□□ 0.8
COL9A3-201ENST00000343916 SULT1E1P49888 294 aa20.03■□□□□ 0.8
COL9A3-201ENST00000343916 BMPR2Q13873 1038 aa20.03■□□□□ 0.8
COL9A3-201ENST00000343916 HEATR6Q6AI08 1181 aaKnown RBP20.03■□□□□ 0.8
COL9A3-201ENST00000343916 DENND5BQ6ZUT9 1274 aa20.03■□□□□ 0.8
COL9A3-201ENST00000343916 RPAINQ86UA6 219 aa20.03■□□□□ 0.8
COL9A3-201ENST00000343916 MAGEC3Q8TD91 643 aa20.03■□□□□ 0.8
COL9A3-201ENST00000343916 APOPT1Q96IL0 206 aa20.03■□□□□ 0.8
COL9A3-201ENST00000343916 PIH1D1Q9NWS0 290 aaKnown RBP20.03■□□□□ 0.8
COL9A3-201ENST00000343916 NUMBLQ9Y6R0 609 aa20.03■□□□□ 0.8
COL9A3-201ENST00000343916 KCNE1P15382 129 aa20.03■□□□□ 0.8
COL9A3-201ENST00000343916 VAV1P15498 845 aa20.03■□□□□ 0.8
COL9A3-201ENST00000343916 AXLP30530 894 aa20.03■□□□□ 0.8
COL9A3-201ENST00000343916 MATKP42679 507 aa20.03■□□□□ 0.8
COL9A3-201ENST00000343916 ETV4P43268 484 aa20.03■□□□□ 0.8
COL9A3-201ENST00000343916 MAGEA6P43360 314 aa20.03■□□□□ 0.8
COL9A3-201ENST00000343916 NEK3P51956 506 aa20.03■□□□□ 0.8
COL9A3-201ENST00000343916 PCBP1Q15365 356 aaKnown RBP eCLIP20.03■□□□□ 0.8
COL9A3-201ENST00000343916 TWF2Q6IBS0 349 aaKnown RBP20.03■□□□□ 0.8
COL9A3-201ENST00000343916 HSFY1Q96LI6 401 aa20.03■□□□□ 0.8
COL9A3-201ENST00000343916 CEP41Q9BYV8 373 aa20.03■□□□□ 0.8
COL9A3-201ENST00000343916 VPS11Q9H270 941 aa20.03■□□□□ 0.8
COL9A3-201ENST00000343916 PNPLA8Q9NP80 782 aa20.03■□□□□ 0.8
COL9A3-201ENST00000343916 USP3Q9Y6I4 520 aa20.03■□□□□ 0.8
COL9A3-201ENST00000343916 GCATO75600 419 aa20.02■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms