RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 TFAP2DQ7Z6R9 452 aa10.48□□□□□ -0.73
USP54-201ENST00000339859 PIGZQ86VD9 579 aa10.48□□□□□ -0.73
USP54-201ENST00000339859 KREMEN2Q8NCW0 462 aa10.48□□□□□ -0.73
USP54-201ENST00000339859 IRGQQ8WZA9 623 aa10.48□□□□□ -0.73
USP54-201ENST00000339859 DDX23Q9BUQ8 820 aaKnown RBP10.48□□□□□ -0.73
USP54-201ENST00000339859 ADAMTS5Q9UNA0 930 aa10.48□□□□□ -0.73
USP54-201ENST00000339859 DRG1Q9Y295 367 aaKnown RBP10.48□□□□□ -0.73
USP54-201ENST00000339859 ASB3Q9Y575 518 aa10.48□□□□□ -0.73
USP54-201ENST00000339859 BRWD3Q6RI45 1802 aa10.48□□□□□ -0.73
USP54-201ENST00000339859 TNRC6CQ9HCJ0 1690 aaKnown RBP10.48□□□□□ -0.73
USP54-201ENST00000339859 A0A0U1RQF3 1178 aa10.48□□□□□ -0.73
USP54-201ENST00000339859 ATP8B1O43520 1251 aa10.48□□□□□ -0.73
USP54-201ENST00000339859 EDNRBP24530 442 aa10.48□□□□□ -0.73
USP54-201ENST00000339859 SULT2A1Q06520 285 aa10.48□□□□□ -0.73
USP54-201ENST00000339859 KCNT1Q5JUK3 1230 aa10.48□□□□□ -0.73
USP54-201ENST00000339859 VARS2Q5ST30 1063 aaKnown RBP10.48□□□□□ -0.73
USP54-201ENST00000339859 KCNT2Q6UVM3 1135 aa10.48□□□□□ -0.73
USP54-201ENST00000339859 ELMO3Q96BJ8 720 aa10.48□□□□□ -0.73
USP54-201ENST00000339859 RAD9AQ99638 391 aa10.48□□□□□ -0.73
USP54-201ENST00000339859 FAM96AQ9H5X1 160 aa10.48□□□□□ -0.73
USP54-201ENST00000339859 COMMD8Q9NX08 183 aa10.48□□□□□ -0.73
USP54-201ENST00000339859 FBXL5Q9UKA1 691 aa10.48□□□□□ -0.73
USP54-201ENST00000339859 DNPEPQ9ULA0 475 aa10.48□□□□□ -0.73
USP54-201ENST00000339859 PHF24Q9UPV7 400 aa10.48□□□□□ -0.73
USP54-201ENST00000339859 WNT7AO00755 349 aa10.48□□□□□ -0.73
USP54-201ENST00000339859 GLI1P08151 1106 aa10.48□□□□□ -0.73
USP54-201ENST00000339859 MAPK8P45983 427 aa10.48□□□□□ -0.73
USP54-201ENST00000339859 TBCCQ15814 346 aa10.48□□□□□ -0.73
USP54-201ENST00000339859 RAD9BQ6WBX8 426 aa10.48□□□□□ -0.73
USP54-201ENST00000339859 FAXDC2Q96IV6 333 aa10.48□□□□□ -0.73
USP54-201ENST00000339859 SGIP1Q9BQI5 828 aa10.48□□□□□ -0.73
USP54-201ENST00000339859 MYH14Q7Z406 1995 aaKnown RBP10.48□□□□□ -0.73
USP54-201ENST00000339859 TGFB1I1O43294 461 aa10.48□□□□□ -0.73
USP54-201ENST00000339859 ENDOD1O94919 500 aa10.48□□□□□ -0.73
USP54-201ENST00000339859 TRUB2O95900 331 aaKnown RBP10.48□□□□□ -0.73
USP54-201ENST00000339859 PLEKP08567 350 aaPredicted RBP10.48□□□□□ -0.73
USP54-201ENST00000339859 SP100P23497 879 aaPredicted RBP10.48□□□□□ -0.73
USP54-201ENST00000339859 TKTP29401 623 aaKnown RBP10.48□□□□□ -0.73
USP54-201ENST00000339859 SNRPD1P62314 119 aaKnown RBP10.48□□□□□ -0.73
USP54-201ENST00000339859 MRPS5P82675 430 aaKnown RBP10.48□□□□□ -0.73
USP54-201ENST00000339859 BCL2L1Q07817 233 aa10.48□□□□□ -0.73
USP54-201ENST00000339859 FAM46CQ5VWP2 391 aa10.48□□□□□ -0.73
USP54-201ENST00000339859 GRAMD4Q6IC98 578 aa10.48□□□□□ -0.73
USP54-201ENST00000339859 CEP68Q76N32 757 aa10.48□□□□□ -0.73
USP54-201ENST00000339859 SLC13A5Q86YT5 568 aaPredicted RBP10.48□□□□□ -0.73
USP54-201ENST00000339859 GLIS3Q8NEA6 775 aa10.48□□□□□ -0.73
USP54-201ENST00000339859 ZBTB10Q96DT7 871 aa10.48□□□□□ -0.73
USP54-201ENST00000339859 CARD9Q9H257 536 aa10.48□□□□□ -0.73
USP54-201ENST00000339859 PPCSQ9HAB8 311 aa10.48□□□□□ -0.73
USP54-201ENST00000339859 CLCA2Q9UQC9 943 aa10.48□□□□□ -0.73
USP54-201ENST00000339859 TMEM247A6NEH6 219 aa10.48□□□□□ -0.73
USP54-201ENST00000339859 SIGLEC16A6NMB1 481 aa10.48□□□□□ -0.73
USP54-201ENST00000339859 FNTAP49354 379 aa10.48□□□□□ -0.73
USP54-201ENST00000339859 ILF2Q12905 390 aaKnown RBP10.48□□□□□ -0.73
USP54-201ENST00000339859 MRNIPQ6NTE8 343 aa10.48□□□□□ -0.73
USP54-201ENST00000339859 CCNJLQ8IV13 435 aa10.48□□□□□ -0.73
USP54-201ENST00000339859 MCOLN1Q9GZU1 580 aa10.48□□□□□ -0.73
USP54-201ENST00000339859 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.47□□□□□ -0.73
USP54-201ENST00000339859 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.47□□□□□ -0.73
USP54-201ENST00000339859 TLR5O60602 858 aa10.47□□□□□ -0.73
USP54-201ENST00000339859 SERPINF2P08697 491 aa10.47□□□□□ -0.73
USP54-201ENST00000339859 DDX6P26196 483 aaKnown RBP eCLIP10.47□□□□□ -0.73
USP54-201ENST00000339859 TYK2P29597 1187 aa10.47□□□□□ -0.73
USP54-201ENST00000339859 SCNN1BP51168 640 aa10.47□□□□□ -0.73
USP54-201ENST00000339859 AIF1P55008 147 aa10.47□□□□□ -0.73
USP54-201ENST00000339859 TARBP2Q15633 366 aaKnown RBP10.47□□□□□ -0.73
USP54-201ENST00000339859 ADAM32Q8TC27 787 aa10.47□□□□□ -0.73
USP54-201ENST00000339859 BBS2Q9BXC9 721 aa10.47□□□□□ -0.73
USP54-201ENST00000339859 LRRC40Q9H9A6 602 aa10.47□□□□□ -0.73
USP54-201ENST00000339859 CLDND1Q9NY35 253 aa10.47□□□□□ -0.73
USP54-201ENST00000339859 CFAP97Q9P2B7 532 aa10.47□□□□□ -0.73
USP54-201ENST00000339859 TRHDEQ9UKU6 1024 aa10.47□□□□□ -0.73
USP54-201ENST00000339859 VANGL2Q9ULK5 521 aa10.47□□□□□ -0.73
USP54-201ENST00000339859 BAZ2AQ9UIF9 1905 aaKnown RBP10.47□□□□□ -0.73
USP54-201ENST00000339859 NRP1O14786 923 aa10.47□□□□□ -0.73
USP54-201ENST00000339859 TIMP1P01033 207 aa10.47□□□□□ -0.73
USP54-201ENST00000339859 SMAD3P84022 425 aaKnown RBP10.47□□□□□ -0.73
USP54-201ENST00000339859 RBBP5Q15291 538 aaKnown RBP10.47□□□□□ -0.73
USP54-201ENST00000339859 RAP1GAP2Q684P5 730 aa10.47□□□□□ -0.73
USP54-201ENST00000339859 LRRC55Q6ZSA7 311 aa10.47□□□□□ -0.73
USP54-201ENST00000339859 CXorf40AQ8TE69 158 aa10.47□□□□□ -0.73
USP54-201ENST00000339859 ZCCHC2Q9C0B9 1178 aaKnown RBP10.47□□□□□ -0.73
USP54-201ENST00000339859 ZYG11BQ9C0D3 744 aa10.47□□□□□ -0.73
USP54-201ENST00000339859 PKD2L2Q9NZM6 624 aa10.47□□□□□ -0.73
USP54-201ENST00000339859 SEPT3Q9UH03 358 aa10.47□□□□□ -0.73
USP54-201ENST00000339859 NEU2Q9Y3R4 380 aa10.47□□□□□ -0.73
USP54-201ENST00000339859 DHX15O43143 795 aaKnown RBP10.47□□□□□ -0.73
USP54-201ENST00000339859 SERPINA4P29622 427 aa10.47□□□□□ -0.73
USP54-201ENST00000339859 COILP38432 576 aaPredicted RBP10.47□□□□□ -0.73
USP54-201ENST00000339859 CCZ1BP86790 482 aa10.47□□□□□ -0.73
USP54-201ENST00000339859 CCZ1P86791 482 aaPredicted RBP10.47□□□□□ -0.73
USP54-201ENST00000339859 LPIN1Q14693 890 aa10.47□□□□□ -0.73
USP54-201ENST00000339859 MPPE1Q53F39 396 aa10.47□□□□□ -0.73
USP54-201ENST00000339859 TTC39BQ5VTQ0 682 aaPredicted RBP10.47□□□□□ -0.73
USP54-201ENST00000339859 SDHAF4Q5VUM1 108 aa10.47□□□□□ -0.73
USP54-201ENST00000339859 KIAA1324Q6UXG2 1013 aaKnown RBP10.47□□□□□ -0.73
USP54-201ENST00000339859 SPACA7Q96KW9 195 aa10.47□□□□□ -0.73
USP54-201ENST00000339859 FICDQ9BVA6 458 aa10.47□□□□□ -0.73
USP54-201ENST00000339859 PLAAQ9Y263 795 aa10.47□□□□□ -0.73
USP54-201ENST00000339859 HEATR9A2RTY3 570 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms