RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 OPALINQ96PE5 141 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 SLC6A17Q9H1V8 727 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 TMEM206Q9H813 350 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 PCDH12Q9NPG4 1184 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 HEY2Q9UBP5 337 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 PRPF19Q9UMS4 504 aaKnown RBP4.28□□□□□ -1.72
NEDD4-201ENST00000338963 MROH5Q6ZUA9 1318 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 A0A0G2JND7 137 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 H3BMM5 538 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 NDUFA2O43678 99 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 DNAJB2P25686 324 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 MAGEA11P43364 429 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 COPAP53621 1224 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 UBE3AQ05086 875 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 ZNF33BQ06732 778 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 KLRC3Q07444 240 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 TAF5Q15542 800 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 TAB1Q15750 504 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 FAM26DQ5JW98 314 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 RRAGAQ7L523 313 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 LRRTM3Q86VH5 581 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 SLAIN1Q8ND83 568 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 VANGL1Q8TAA9 524 aaPredicted RBP4.28□□□□□ -1.72
NEDD4-201ENST00000338963 TBATAQ96M53 351 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 ALPK1Q96QP1 1244 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 NUP85Q9BW27 656 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 ARMC7Q9H6L4 198 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 ANLNQ9NQW6 1124 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 FAM8A1Q9UBU6 413 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 FETUBQ9UGM5 382 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 SIK3Q9Y2K2 1263 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 DNALI1O14645 258 aaPredicted RBP4.27□□□□□ -1.73
NEDD4-201ENST00000338963 MSI1O43347 362 aaKnown RBP4.27□□□□□ -1.73
NEDD4-201ENST00000338963 FAM189A1O60320 539 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 RHOBTB1O94844 696 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 LYPLA2O95372 231 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 CRTAMO95727 393 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 DLGAP3O95886 979 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 T-ENOLP0DO92 83 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 DBTP11182 482 aaKnown RBP4.27□□□□□ -1.73
NEDD4-201ENST00000338963 RAB4AP20338 218 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 DDOSTP39656 456 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 OR3A3P47888 321 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 ERVK-21P61565 698 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 PPIL2Q13356 520 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 SF3B4Q15427 424 aaKnown RBP eCLIP4.27□□□□□ -1.731e-17■■■■■ 61.1
NEDD4-201ENST00000338963 DLG2Q15700 870 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 KRT79Q5XKE5 535 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 FAM171BQ6P995 826 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 GALNT18Q6P9A2 607 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 ARHGAP36Q6ZRI8 547 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 TTC5Q8N0Z6 440 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 TTC29Q8NA56 475 aaPredicted RBP4.27□□□□□ -1.73
NEDD4-201ENST00000338963 PIK3R3Q92569 461 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 MLPHQ9BV36 600 aaPredicted RBP4.27□□□□□ -1.73
NEDD4-201ENST00000338963 TSSK1BQ9BXA7 367 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 MANSC1Q9H8J5 431 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 QTRT2Q9H974 415 aaKnown RBP4.27□□□□□ -1.73
NEDD4-201ENST00000338963 GPN2Q9H9Y4 310 aaPredicted RBP4.27□□□□□ -1.73
NEDD4-201ENST00000338963 EXTL2Q9UBQ6 330 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 DENND2AQ9ULE3 1009 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 SNX24Q9Y343 169 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 RBMX2Q9Y388 322 aaKnown RBP4.27□□□□□ -1.73
NEDD4-201ENST00000338963 PFASO15067 1338 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 PCDH11YQ9BZA8 1340 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 USP32Q8NFA0 1604 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 ZBTB5O15062 677 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 SSX5O60225 188 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 ADAM11O75078 769 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 RFPL2O75678 378 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 SNAPINO95295 136 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 DEXIO95424 95 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 FGGP02679 453 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 ITGB6P18564 788 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 PON1P27169 355 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 MAOBP27338 520 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 ABCG1P45844 678 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 IRF5Q13568 498 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 ARMCX4Q5H9R4 360 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 HYIQ5T013 277 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 C6orf52Q5T4I8 152 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 HES5Q5TA89 166 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 ITPRIPL1Q6GPH6 555 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 RFWD3Q6PCD5 774 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 FKBP9P1Q75LS8 142 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 RCOR2Q8IZ40 523 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 LINC00518Q8N0U6 118 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 RNASE11Q8TAA1 199 aaKnown RBP4.27□□□□□ -1.73
NEDD4-201ENST00000338963 RSAD2Q8WXG1 361 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 RANBP9Q96S59 729 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 TMEM120AQ9BXJ8 343 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 NCOR1P1Q9H4R4 102 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 KLHL1Q9NR64 748 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 ARL8BQ9NVJ2 186 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 ENPP5Q9UJA9 477 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 PNMA8CA0A1B0GUJ8 204 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 PLEKHG3A1L390 1219 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 ZSCAN5CA6NGD5 496 aaPredicted RBP4.27□□□□□ -1.73
NEDD4-201ENST00000338963 TNPO2O14787 897 aaKnown RBP4.27□□□□□ -1.73
NEDD4-201ENST00000338963 KCNN4O15554 427 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms