RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 STRA8Q7Z7C7 330 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 MICU2Q8IYU8 434 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 RASGEF1CQ8N431 466 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 PHF21AQ96BD5 680 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 PLEKHA8Q96JA3 519 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 MTMR9Q96QG7 549 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 RTFDC1Q9BY42 306 aaPredicted RBP10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 AGO4Q9HCK5 861 aaKnown RBP10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 UBA2Q9UBT2 640 aaPredicted RBP10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 PIN4Q9Y237 131 aaKnown RBP10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 PRR23D1E9PI22 279 aaPredicted RBP10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 TRIM13O60858 407 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 MYL3P08590 195 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 PRR23D2P0DMB1 279 aaPredicted RBP10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 RRM2P31350 389 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 NR1H2P55055 460 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 EEPD1Q7L9B9 569 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 GDPD5Q8WTR4 605 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 ADGRE3Q9BY15 652 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 GPAMQ9HCL2 828 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 GGT7Q9UJ14 662 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 FGRP09769 529 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 AKT1P31749 480 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 PBX1P40424 430 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 RENBPP51606 427 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 ITGA1P56199 1179 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 TAB1Q15750 504 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 ATXN7L3BQ96GX2 97 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 SLITRK1Q96PX8 696 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 NMRAL1Q9HBL8 299 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 CASS4Q9NQ75 786 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 TBKBP1A7MCY6 615 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 TRIM24O15164 1050 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 SGPL1O95470 568 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 ALDH5A1P51649 535 aaPredicted RBP10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 CHN2P52757 468 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 SYTL3Q4VX76 610 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 LRRC55Q6ZSA7 311 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 DEFB107AQ8IZN7 70 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 ETNPPLQ8TBG4 499 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 SLC20A1Q8WUM9 679 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 PPP1R14BQ96C90 147 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 CISHQ9NSE2 258 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 TPRKBQ9Y3C4 175 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 FCHO1O14526 889 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 PSMG1O95456 288 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 PTPN11Q06124 597 aaPredicted RBP10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 SNAPC2Q13487 334 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 TTMPQ5BVD1 217 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 PARK7Q99497 189 aaKnown RBP10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 RAD21L1Q9H4I0 556 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 LATS2Q9NRM7 1088 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 PRPF19Q9UMS4 504 aaKnown RBP10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 HOXD10P28358 340 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 HARS2P49590 506 aaKnown RBP10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 RPS6P62753 249 aaKnown RBP10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 MIEF2Q96C03 454 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 ETAA1Q9NY74 926 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 MORF4L1Q9UBU8 362 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 PEAK1Q9H792 1746 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 LPCAT2Q7L5N7 544 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 LRRC49Q8IUZ0 686 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 SIK2Q9H0K1 926 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 MROH8Q9H579 483 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 OSGEPQ9NPF4 335 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 LRRC37A3O60309 1634 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 BAATQ14032 418 aaPredicted RBP10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 CNGA2Q16280 664 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 PIWIL2Q8TC59 973 aaKnown RBP10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 TMEM176AQ96HP8 235 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 RNF112Q9ULX5 631 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 AP4E1Q9UPM8 1137 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 CORO2BQ9UQ03 480 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 MSH3P20585 1137 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 AXLP30530 894 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 CYP4Z1Q86W10 505 aa10.57□□□□□ -0.72
CCDC88A-202ENST00000336838 AIF1P55008 147 aa10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 OXCT1P55809 520 aa10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 CCDC60Q8IWA6 550 aaPredicted RBP10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 C2orf69Q8N8R5 385 aa10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 CASP10Q92851 521 aa10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 SARS2Q9NP81 518 aaKnown RBP10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 KCNMB3Q9NPA1 279 aa10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 HPCAP84074 193 aa10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 OASLQ15646 514 aaKnown RBP10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 S100ZQ8WXG8 99 aa10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 TMEM79Q9BSE2 394 aa10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 DHX33Q9H6R0 707 aaKnown RBP10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 WDCPQ9H6R7 721 aa10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 ZNF70Q9UC06 446 aaPredicted RBP10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 FAM95CA0A1B0GW59 222 aa10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 PRPF4O43172 522 aaKnown RBP eCLIP10.56□□□□□ -0.725e-22■□□□□ 10.4
CCDC88A-202ENST00000336838 NCAM1P13591 858 aa10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 DPYSQ14117 519 aa10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 ATP6AP1LQ52LC2 224 aa10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 LACTB2Q53H82 288 aaPredicted RBP10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 FAXDC2Q96IV6 333 aa10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 CAAP1Q9H8G2 361 aa10.56□□□□□ -0.72
CCDC88A-202ENST00000336838 PDZK1P1A8MUH7 402 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms