RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 SARAFQ96BY9 339 aa3.87□□□□□ -1.79
HMGB1-201ENST00000326004 DAZAP1Q96EP5 407 aaKnown RBP3.87□□□□□ -1.79
HMGB1-201ENST00000326004 SNX18Q96RF0 628 aa3.87□□□□□ -1.79
HMGB1-201ENST00000326004 CPNE5Q9HCH3 593 aa3.87□□□□□ -1.79
HMGB1-201ENST00000326004 GAR1Q9NY12 217 aaKnown RBP3.87□□□□□ -1.79
HMGB1-201ENST00000326004 GRHPRQ9UBQ7 328 aa3.87□□□□□ -1.79
HMGB1-201ENST00000326004 UBE2J1Q9Y385 318 aaPredicted RBP3.87□□□□□ -1.79
HMGB1-201ENST00000326004 INSL6Q9Y581 213 aa3.87□□□□□ -1.79
HMGB1-201ENST00000326004 COL11A2P13942 1736 aaPredicted RBP3.87□□□□□ -1.79
HMGB1-201ENST00000326004 H7C1Q1 480 aa3.86□□□□□ -1.79
HMGB1-201ENST00000326004 ZNF213O14771 459 aa3.86□□□□□ -1.79
HMGB1-201ENST00000326004 SUV39H1O43463 412 aa3.86□□□□□ -1.79
HMGB1-201ENST00000326004 PIP5K1CO60331 668 aa3.86□□□□□ -1.79
HMGB1-201ENST00000326004 HNRNPCP07910 306 aaKnown RBP eCLIP3.86□□□□□ -1.794e-6■□□□□ 10.4
HMGB1-201ENST00000326004 MATN1P21941 496 aa3.86□□□□□ -1.79
HMGB1-201ENST00000326004 FPR3P25089 353 aa3.86□□□□□ -1.79
HMGB1-201ENST00000326004 KLRK1P26718 216 aa3.86□□□□□ -1.79
HMGB1-201ENST00000326004 AKT1P31749 480 aa3.86□□□□□ -1.79
HMGB1-201ENST00000326004 CDK7P50613 346 aa3.86□□□□□ -1.79
HMGB1-201ENST00000326004 CYP4F2P78329 520 aa3.86□□□□□ -1.79
HMGB1-201ENST00000326004 HOXA4Q00056 320 aaPredicted RBP3.86□□□□□ -1.79
HMGB1-201ENST00000326004 CFHR3Q02985 330 aa3.86□□□□□ -1.79
HMGB1-201ENST00000326004 DEUP1Q05D60 604 aa3.86□□□□□ -1.79
HMGB1-201ENST00000326004 BFSP2Q13515 415 aa3.86□□□□□ -1.79
HMGB1-201ENST00000326004 RNASE12Q5GAN4 147 aaKnown RBP3.86□□□□□ -1.79
HMGB1-201ENST00000326004 SULT6B1Q6IMI4 303 aa3.86□□□□□ -1.79
HMGB1-201ENST00000326004 LIN54Q6MZP7 749 aa3.86□□□□□ -1.79
HMGB1-201ENST00000326004 NFRKBQ6P4R8 1299 aa3.86□□□□□ -1.79
HMGB1-201ENST00000326004 KIRREL2Q6UWL6 708 aa3.86□□□□□ -1.79
HMGB1-201ENST00000326004 TRIM72Q6ZMU5 477 aa3.86□□□□□ -1.79
HMGB1-201ENST00000326004 KRT27Q7Z3Y8 459 aa3.86□□□□□ -1.79
HMGB1-201ENST00000326004 TRABD2AQ86V40 505 aa3.86□□□□□ -1.79
HMGB1-201ENST00000326004 LINC01465Q8N7H1 131 aa3.86□□□□□ -1.79
HMGB1-201ENST00000326004 C12orf76Q8N812 135 aaPredicted RBP3.86□□□□□ -1.79
HMGB1-201ENST00000326004 FAM71DQ8N9W8 422 aa3.86□□□□□ -1.79
HMGB1-201ENST00000326004 CHFRQ96EP1 664 aa3.86□□□□□ -1.79
HMGB1-201ENST00000326004 FAR2Q96K12 515 aa3.86□□□□□ -1.79
HMGB1-201ENST00000326004 SCLT1Q96NL6 688 aa3.86□□□□□ -1.79
HMGB1-201ENST00000326004 DDX23Q9BUQ8 820 aaKnown RBP3.86□□□□□ -1.79
HMGB1-201ENST00000326004 SORBS1Q9BX66 1292 aaKnown RBP3.86□□□□□ -1.79
HMGB1-201ENST00000326004 CIPCQ9C0C6 399 aa3.86□□□□□ -1.79
HMGB1-201ENST00000326004 IKZF4Q9H2S9 585 aa3.86□□□□□ -1.79
HMGB1-201ENST00000326004 PABPC3Q9H361 631 aaKnown RBP3.86□□□□□ -1.79
HMGB1-201ENST00000326004 SYNPO2LQ9H987 977 aa3.86□□□□□ -1.79
HMGB1-201ENST00000326004 KCNK9Q9NPC2 374 aa3.86□□□□□ -1.79
HMGB1-201ENST00000326004 PRDM8Q9NQV8 689 aa3.86□□□□□ -1.79
HMGB1-201ENST00000326004 SEMA4GQ9NTN9 838 aa3.86□□□□□ -1.79
HMGB1-201ENST00000326004 FBXO28Q9NVF7 368 aa3.86□□□□□ -1.79
HMGB1-201ENST00000326004 LPAR3Q9UBY5 353 aa3.86□□□□□ -1.79
HMGB1-201ENST00000326004 ASAP1Q9ULH1 1129 aa3.86□□□□□ -1.79
HMGB1-201ENST00000326004 WNT6Q9Y6F9 365 aa3.86□□□□□ -1.79
HMGB1-201ENST00000326004 FAM90A18PA6NE21 464 aa3.85□□□□□ -1.79
HMGB1-201ENST00000326004 FAM90A16PA6NEW6 464 aa3.85□□□□□ -1.79
HMGB1-201ENST00000326004 FAM90A9PA6NNJ1 464 aa3.85□□□□□ -1.79
HMGB1-201ENST00000326004 FAM90A5PA8MXJ8 464 aa3.85□□□□□ -1.79
HMGB1-201ENST00000326004 BTBD19C9JJ37 291 aa3.85□□□□□ -1.79
HMGB1-201ENST00000326004 IRAK2O43187 625 aa3.85□□□□□ -1.79
HMGB1-201ENST00000326004 CA12O43570 354 aa3.85□□□□□ -1.79
HMGB1-201ENST00000326004 PROP1O75360 226 aa3.85□□□□□ -1.79
HMGB1-201ENST00000326004 RPP40O75818 363 aaKnown RBP3.85□□□□□ -1.79
HMGB1-201ENST00000326004 PDE8BO95263 885 aa3.85□□□□□ -1.79
HMGB1-201ENST00000326004 LARGE1O95461 756 aa3.85□□□□□ -1.79
HMGB1-201ENST00000326004 SLPIP03973 132 aa3.85□□□□□ -1.79
HMGB1-201ENST00000326004 FAM90A15PP0C7V4 464 aa3.85□□□□□ -1.79
HMGB1-201ENST00000326004 FAM90A14PP0C7W9 464 aa3.85□□□□□ -1.79
HMGB1-201ENST00000326004 DHRS4L1P0CG22 281 aa3.85□□□□□ -1.79
HMGB1-201ENST00000326004 TMIGD3P0DMS9 266 aaPredicted RBP3.85□□□□□ -1.79
HMGB1-201ENST00000326004 CST5P28325 142 aaPredicted RBP3.85□□□□□ -1.79
HMGB1-201ENST00000326004 IGHMBP2P38935 993 aaKnown RBP3.85□□□□□ -1.79
HMGB1-201ENST00000326004 CCT5P48643 541 aa3.85□□□□□ -1.79
HMGB1-201ENST00000326004 ARL4CP56559 192 aa3.85□□□□□ -1.79
HMGB1-201ENST00000326004 GPC5P78333 572 aa3.85□□□□□ -1.79
HMGB1-201ENST00000326004 COL10A1Q03692 680 aa3.85□□□□□ -1.79
HMGB1-201ENST00000326004 RAPGEF1Q13905 1077 aa3.85□□□□□ -1.79
HMGB1-201ENST00000326004 CBFBQ13951 182 aa3.85□□□□□ -1.79
HMGB1-201ENST00000326004 POSTNQ15063 836 aa3.85□□□□□ -1.79
HMGB1-201ENST00000326004 FAM187BQ17R55 369 aa3.85□□□□□ -1.79
HMGB1-201ENST00000326004 ACSM6Q6P461 480 aa3.85□□□□□ -1.79
HMGB1-201ENST00000326004 NAPRTQ6XQN6 538 aa3.85□□□□□ -1.79
HMGB1-201ENST00000326004 LDHAL6AQ6ZMR3 332 aa3.85□□□□□ -1.79
HMGB1-201ENST00000326004 BCDIN3DQ7Z5W3 292 aaKnown RBP3.85□□□□□ -1.79
HMGB1-201ENST00000326004 GPR150Q8NGU9 434 aa3.85□□□□□ -1.79
HMGB1-201ENST00000326004 SLC22A17Q8WUG5 538 aa3.85□□□□□ -1.79
HMGB1-201ENST00000326004 GLMPQ8WWB7 406 aa3.85□□□□□ -1.79
HMGB1-201ENST00000326004 EDC3Q96F86 508 aaKnown RBP3.85□□□□□ -1.79
HMGB1-201ENST00000326004 SORCS2Q96PQ0 1159 aa3.85□□□□□ -1.79
HMGB1-201ENST00000326004 FYTTD1Q96QD9 318 aaKnown RBP3.85□□□□□ -1.79
HMGB1-201ENST00000326004 MMS19Q96T76 1030 aa3.85□□□□□ -1.79
HMGB1-201ENST00000326004 AGAP2Q99490 1192 aa3.85□□□□□ -1.79
HMGB1-201ENST00000326004 RNF26Q9BY78 433 aaPredicted RBP3.85□□□□□ -1.79
HMGB1-201ENST00000326004 KLK15Q9H2R5 256 aa3.85□□□□□ -1.79
HMGB1-201ENST00000326004 SAP30LQ9HAJ7 183 aa3.85□□□□□ -1.79
HMGB1-201ENST00000326004 USP29Q9HBJ7 922 aa3.85□□□□□ -1.79
HMGB1-201ENST00000326004 SAYSD1Q9NPB0 183 aa3.85□□□□□ -1.79
HMGB1-201ENST00000326004 VPS45Q9NRW7 570 aa3.85□□□□□ -1.79
HMGB1-201ENST00000326004 ASB6Q9NWX5 421 aa3.85□□□□□ -1.79
HMGB1-201ENST00000326004 FZD4Q9ULV1 537 aa3.85□□□□□ -1.79
HMGB1-201ENST00000326004 C19orf53Q9UNZ5 99 aaPredicted RBP3.85□□□□□ -1.79
HMGB1-201ENST00000326004 CNTN6Q9UQ52 1028 aa3.85□□□□□ -1.79
HMGB1-201ENST00000326004 LOC105369274A0A096LPK9 316 aa3.84□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms