RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 NOL9Q5SY16 702 aaKnown RBP13.9□□□□□ -0.18
RFFL-201ENST00000315249 CCDC90BQ9GZT6 254 aa13.9□□□□□ -0.18
RFFL-201ENST00000315249 CACNA1FO60840 1977 aa13.9□□□□□ -0.18
RFFL-201ENST00000315249 GUCA1CO95843 209 aa13.9□□□□□ -0.18
RFFL-201ENST00000315249 ACRP10323 421 aa13.9□□□□□ -0.18
RFFL-201ENST00000315249 PDCD2Q16342 344 aaPredicted RBP13.9□□□□□ -0.18
RFFL-201ENST00000315249 HIBCHQ6NVY1 386 aaPredicted RBP13.9□□□□□ -0.18
RFFL-201ENST00000315249 MAB21L3Q8N8X9 362 aa13.9□□□□□ -0.18
RFFL-201ENST00000315249 H0Y3Z8 333 aa13.9□□□□□ -0.18
RFFL-201ENST00000315249 MAFO75444 373 aaPredicted RBP13.9□□□□□ -0.18
RFFL-201ENST00000315249 HIRAP54198 1017 aaPredicted RBP13.9□□□□□ -0.18
RFFL-201ENST00000315249 PMS1P54277 932 aaKnown RBP13.9□□□□□ -0.18
RFFL-201ENST00000315249 CENPPQ6IPU0 288 aa13.9□□□□□ -0.18
RFFL-201ENST00000315249 NRBF2Q96F24 287 aa13.9□□□□□ -0.18
RFFL-201ENST00000315249 RRN3Q9NYV6 651 aa13.9□□□□□ -0.18
RFFL-201ENST00000315249 RARGP13631 454 aa13.89□□□□□ -0.19
RFFL-201ENST00000315249 AMPD1P23109 780 aa13.89□□□□□ -0.19
RFFL-201ENST00000315249 PLA2G4AP47712 749 aa13.89□□□□□ -0.19
RFFL-201ENST00000315249 BOP1Q14137 746 aaKnown RBP13.89□□□□□ -0.19
RFFL-201ENST00000315249 DDR2Q16832 855 aa13.89□□□□□ -0.19
RFFL-201ENST00000315249 CBWD3Q5JTY5 395 aa13.89□□□□□ -0.19
RFFL-201ENST00000315249 CBWD5Q5RIA9 395 aa13.89□□□□□ -0.19
RFFL-201ENST00000315249 ANKS6Q68DC2 871 aa13.89□□□□□ -0.19
RFFL-201ENST00000315249 DDX42Q86XP3 938 aaKnown RBP eCLIP13.89□□□□□ -0.19
RFFL-201ENST00000315249 SLC13A5Q86YT5 568 aaPredicted RBP13.89□□□□□ -0.19
RFFL-201ENST00000315249 OSGEPQ9NPF4 335 aa13.89□□□□□ -0.19
RFFL-201ENST00000315249 E5RJQ4 531 aa13.89□□□□□ -0.19
RFFL-201ENST00000315249 PSMD12O00232 456 aaPredicted RBP13.89□□□□□ -0.19
RFFL-201ENST00000315249 EFCAB14O75071 495 aa13.89□□□□□ -0.19
RFFL-201ENST00000315249 PSMD10O75832 226 aa13.89□□□□□ -0.19
RFFL-201ENST00000315249 GLRBP48167 497 aa13.89□□□□□ -0.19
RFFL-201ENST00000315249 RASIP1Q5U651 963 aa13.89□□□□□ -0.19
RFFL-201ENST00000315249 XAB2Q9HCS7 855 aaKnown RBP13.89□□□□□ -0.19
RFFL-201ENST00000315249 UBIAD1Q9Y5Z9 338 aa13.89□□□□□ -0.19
RFFL-201ENST00000315249 SDR42E2A6NKP2 422 aa13.89□□□□□ -0.19
RFFL-201ENST00000315249 TBL1XO60907 577 aa13.89□□□□□ -0.19
RFFL-201ENST00000315249 TNFSF9P41273 254 aa13.89□□□□□ -0.19
RFFL-201ENST00000315249 KDSRQ06136 332 aa13.89□□□□□ -0.19
RFFL-201ENST00000315249 TMEM119Q4V9L6 283 aa13.89□□□□□ -0.19
RFFL-201ENST00000315249 PPP2R2DQ66LE6 453 aa13.89□□□□□ -0.19
RFFL-201ENST00000315249 RAP1GAP2Q684P5 730 aa13.89□□□□□ -0.19
RFFL-201ENST00000315249 LRRC8DQ7L1W4 858 aa13.89□□□□□ -0.19
RFFL-201ENST00000315249 GLT6D1Q7Z4J2 308 aa13.89□□□□□ -0.19
RFFL-201ENST00000315249 C11orf74Q86VG3 221 aa13.89□□□□□ -0.19
RFFL-201ENST00000315249 ACO2Q99798 780 aaKnown RBP13.89□□□□□ -0.19
RFFL-201ENST00000315249 C17orf80Q9BSJ5 609 aa13.89□□□□□ -0.19
RFFL-201ENST00000315249 PIH1D1Q9NWS0 290 aaKnown RBP13.89□□□□□ -0.19
RFFL-201ENST00000315249 CLDN5O00501 218 aa13.89□□□□□ -0.19
RFFL-201ENST00000315249 CA12O43570 354 aa13.89□□□□□ -0.19
RFFL-201ENST00000315249 FKBP9O95302 570 aa13.89□□□□□ -0.19
RFFL-201ENST00000315249 STAU1O95793 577 aaKnown RBP13.89□□□□□ -0.19
RFFL-201ENST00000315249 MARSP56192 900 aaKnown RBP13.89□□□□□ -0.19
RFFL-201ENST00000315249 POLR2LP62875 67 aaKnown RBP13.89□□□□□ -0.19
RFFL-201ENST00000315249 FKBP9P1Q75LS8 142 aa13.89□□□□□ -0.19
RFFL-201ENST00000315249 C10orf53Q8N6V4 93 aa13.89□□□□□ -0.19
RFFL-201ENST00000315249 USP38Q8NB14 1042 aa13.89□□□□□ -0.19
RFFL-201ENST00000315249 CYP4F12Q9HCS2 524 aa13.89□□□□□ -0.19
RFFL-201ENST00000315249 AASDHPPTQ9NRN7 309 aa13.89□□□□□ -0.19
RFFL-201ENST00000315249 PIK3CDO00329 1044 aa13.89□□□□□ -0.19
RFFL-201ENST00000315249 DUSP11O75319 330 aaKnown RBP13.89□□□□□ -0.19
RFFL-201ENST00000315249 SUPT7LO94864 414 aa13.89□□□□□ -0.19
RFFL-201ENST00000315249 ENO1P06733 434 aaKnown RBP13.89□□□□□ -0.19
RFFL-201ENST00000315249 STMN1P16949 149 aa13.89□□□□□ -0.19
RFFL-201ENST00000315249 DUSP4Q13115 394 aa13.89□□□□□ -0.19
RFFL-201ENST00000315249 DCLRE1AQ6PJP8 1040 aa13.89□□□□□ -0.19
RFFL-201ENST00000315249 B3GALNT2Q8NCR0 500 aa13.89□□□□□ -0.19
RFFL-201ENST00000315249 MAML3Q96JK9 1138 aa13.89□□□□□ -0.19
RFFL-201ENST00000315249 FAM161BQ96MY7 647 aa13.89□□□□□ -0.19
RFFL-201ENST00000315249 NXF3Q9H4D5 531 aaKnown RBP13.89□□□□□ -0.19
RFFL-201ENST00000315249 NMRK1Q9NWW6 199 aa13.89□□□□□ -0.19
RFFL-201ENST00000315249 ENO3P13929 434 aaPredicted RBP13.89□□□□□ -0.19
RFFL-201ENST00000315249 GABRR2P28476 465 aa13.89□□□□□ -0.19
RFFL-201ENST00000315249 MARK2Q7KZI7 788 aaKnown RBP13.89□□□□□ -0.19
RFFL-201ENST00000315249 IFNL1Q8IU54 200 aa13.89□□□□□ -0.19
RFFL-201ENST00000315249 ADGRB2O60241 1585 aa13.89□□□□□ -0.19
RFFL-201ENST00000315249 ERFP50548 548 aa13.88□□□□□ -0.19
RFFL-201ENST00000315249 MTA1Q13330 715 aa13.88□□□□□ -0.19
RFFL-201ENST00000315249 TARBP2Q15633 366 aaKnown RBP13.88□□□□□ -0.19
RFFL-201ENST00000315249 CCDC85BQ15834 202 aaPredicted RBP13.88□□□□□ -0.19
RFFL-201ENST00000315249 FAM124AQ86V42 546 aa13.88□□□□□ -0.19
RFFL-201ENST00000315249 CHPFQ8IZ52 775 aa13.88□□□□□ -0.19
RFFL-201ENST00000315249 ZSWIM1Q9BR11 485 aa13.88□□□□□ -0.19
RFFL-201ENST00000315249 UBA2Q9UBT2 640 aaPredicted RBP13.88□□□□□ -0.19
RFFL-201ENST00000315249 CDV3Q9UKY7 258 aaKnown RBP13.88□□□□□ -0.19
RFFL-201ENST00000315249 CDYLQ9Y232 598 aa13.88□□□□□ -0.19
RFFL-201ENST00000315249 PHF20L1A8MW92 1017 aa13.88□□□□□ -0.19
RFFL-201ENST00000315249 CSH1P0DML2 217 aa13.88□□□□□ -0.19
RFFL-201ENST00000315249 CSH2P0DML3 217 aa13.88□□□□□ -0.19
RFFL-201ENST00000315249 TPH1P17752 444 aa13.88□□□□□ -0.19
RFFL-201ENST00000315249 TNNI3P19429 210 aa13.88□□□□□ -0.19
RFFL-201ENST00000315249 CAPZA2P47755 286 aa13.88□□□□□ -0.19
RFFL-201ENST00000315249 TATDN1Q6P1N9 297 aa13.88□□□□□ -0.19
RFFL-201ENST00000315249 MAP4K3Q8IVH8 894 aa13.88□□□□□ -0.19
RFFL-201ENST00000315249 UBE2Q2Q8WVN8 375 aa13.88□□□□□ -0.19
RFFL-201ENST00000315249 POPDC2Q9HBU9 364 aa13.88□□□□□ -0.19
RFFL-201ENST00000315249 TBC1D13Q9NVG8 400 aa13.88□□□□□ -0.19
RFFL-201ENST00000315249 ZMYM2Q9UBW7 1377 aa13.88□□□□□ -0.19
RFFL-201ENST00000315249 B4GALT5O43286 388 aa13.88□□□□□ -0.19
RFFL-201ENST00000315249 CCDC22O60826 627 aa13.88□□□□□ -0.19
RFFL-201ENST00000315249 CDH16O75309 829 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms