RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 SHROOM1Q2M3G4 852 aaPredicted RBP6.6□□□□□ -1.35
VPS35-201ENST00000299138 USP17L1Q7RTZ2 530 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 SYTL1Q8IYJ3 562 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 GPD1LQ8N335 351 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 CCNYL1Q8N7R7 359 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 FLAD1Q8NFF5 587 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 VPS50Q96JG6 964 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 CCDC115Q96NT0 180 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 HAPLN3Q96S86 360 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 ALG13Q9NP73 1137 aaKnown RBP6.6□□□□□ -1.35
VPS35-201ENST00000299138 ADAM28Q9UKQ2 775 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 SUPT3HB4E1H0 165 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 SLC37A4O43826 429 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 SERPINA6P08185 405 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 C7P10643 843 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 CYP11B1P15538 503 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 GNAZP19086 355 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 PMLP29590 882 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 RAB27AP51159 221 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 RCN1Q15293 331 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 PDZK1Q5T2W1 519 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 HAUS6Q7Z4H7 955 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 GLG1Q92896 1179 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 OXNAD1Q96HP4 312 aaPredicted RBP6.6□□□□□ -1.35
VPS35-201ENST00000299138 THTPAQ9BU02 230 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 SLC13A1Q9BZW2 595 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 KLHL4Q9C0H6 718 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 SMARCAL1Q9NZC9 954 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 AXIN1O15169 862 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 LPXNO60711 386 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 MSL3P1P0C860 447 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 HOXB8P17481 243 aaPredicted RBP6.6□□□□□ -1.35
VPS35-201ENST00000299138 CAPZA2P47755 286 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 STARP49675 285 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 CSNK2BP67870 215 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 ZNF200P98182 395 aaPredicted RBP6.6□□□□□ -1.35
VPS35-201ENST00000299138 HERC3Q15034 1050 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 LONRF1Q17RB8 773 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 BOLA3Q53S33 107 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 THOC7Q6I9Y2 204 aaKnown RBP6.6□□□□□ -1.35
VPS35-201ENST00000299138 NECAB2Q7Z6G3 386 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 MAP4K3Q8IVH8 894 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 MCOLN2Q8IZK6 566 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 E2F7Q96AV8 911 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 FAM167AQ96KS9 214 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 CEP44Q9C0F1 390 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 MRM3Q9HC36 420 aaKnown RBP6.6□□□□□ -1.35
VPS35-201ENST00000299138 PLCL2Q9UPR0 1127 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 COL2A1P02458 1487 aaPredicted RBP6.59□□□□□ -1.35
VPS35-201ENST00000299138 UBE2Q2LH0YL09 131 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 MTSS1O43312 755 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 AP1G1O43747 822 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 SYNCRIPO60506 623 aaKnown RBP6.59□□□□□ -1.35
VPS35-201ENST00000299138 KLHL41O60662 606 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 MLNP12872 115 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 ENO3P13929 434 aaPredicted RBP6.59□□□□□ -1.35
VPS35-201ENST00000299138 ALDH1B1P30837 517 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 EFNA5P52803 228 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 SRP54P61011 504 aaKnown RBP6.59□□□□□ -1.35
VPS35-201ENST00000299138 RBBP4Q09028 425 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 PDK2Q15119 407 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 RBBP7Q16576 425 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 B3GNT6Q6ZMB0 384 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 DDIASQ8IXT1 998 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 PNPT1Q8TCS8 783 aaKnown RBP6.59□□□□□ -1.35
VPS35-201ENST00000299138 C18orf8Q96DM3 657 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 BORCS6Q96GS4 357 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 YTHDF1Q9BYJ9 559 aaKnown RBP6.59□□□□□ -1.35
VPS35-201ENST00000299138 C6orf62Q9GZU0 229 aaPredicted RBP6.59□□□□□ -1.35
VPS35-201ENST00000299138 ADAM7Q9H2U9 754 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 ELOVL6Q9H5J4 265 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 THAP1Q9NVV9 213 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 ASNSD1Q9NWL6 643 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 STK32BQ9NY57 414 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 HSPBP1Q9NZL4 362 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 NOD1Q9Y239 953 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 PAPPAQ13219 1627 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 CYP2D7A0A087X1C5 515 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 F8W810 466 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 GOLGA8SH3BPF8 625 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 FOXN3O00409 490 aaPredicted RBP6.59□□□□□ -1.35
VPS35-201ENST00000299138 HNRNPRO43390 633 aaKnown RBP6.59□□□□□ -1.35
VPS35-201ENST00000299138 EIF4BP23588 611 aaKnown RBP6.59□□□□□ -1.35
VPS35-201ENST00000299138 COPAP53621 1224 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 PPIDQ08752 370 aaKnown RBP6.59□□□□□ -1.35
VPS35-201ENST00000299138 ITPK1Q13572 414 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 TRIQKQ629K1 86 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 ADGRA1Q86SQ6 560 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 DHDDSQ86SQ9 333 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 PACRGLQ8N7B6 248 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 LEMD2Q8NC56 503 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 OTUB1Q96FW1 271 aaPredicted RBP6.59□□□□□ -1.35
VPS35-201ENST00000299138 EEF2KMTQ96G04 330 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 IDI2Q9BXS1 227 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 IARS2Q9NSE4 1012 aaKnown RBP6.59□□□□□ -1.35
VPS35-201ENST00000299138 UBR2Q8IWV8 1755 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP6.59□□□□□ -1.35
VPS35-201ENST00000299138 CHADO15335 359 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 SNX2O60749 519 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 THRAP10827 490 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms