RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 KRT4P19013 534 aa11.91□□□□□ -0.5
CUX1-202ENST00000292538 CA4P22748 312 aa11.91□□□□□ -0.5
CUX1-202ENST00000292538 WARSP23381 471 aaKnown RBP11.91□□□□□ -0.5
CUX1-202ENST00000292538 ARPP19P56211 112 aa11.91□□□□□ -0.5
CUX1-202ENST00000292538 EMC10Q5UCC4 262 aa11.91□□□□□ -0.5
CUX1-202ENST00000292538 SDHAF4Q5VUM1 108 aa11.91□□□□□ -0.5
CUX1-202ENST00000292538 HEATR6Q6AI08 1181 aaKnown RBP11.91□□□□□ -0.5
CUX1-202ENST00000292538 MFSD5Q6N075 450 aa11.91□□□□□ -0.5
CUX1-202ENST00000292538 ARHGEF18Q6ZSZ5 1173 aa11.91□□□□□ -0.5
CUX1-202ENST00000292538 FAM35AQ86V20 835 aa11.91□□□□□ -0.5
CUX1-202ENST00000292538 ZDHHC17Q8IUH5 632 aa11.91□□□□□ -0.5
CUX1-202ENST00000292538 DEPDC1BQ8WUY9 529 aa11.91□□□□□ -0.5
CUX1-202ENST00000292538 HSFY1Q96LI6 401 aa11.91□□□□□ -0.5
CUX1-202ENST00000292538 TTC25Q96NG3 672 aa11.91□□□□□ -0.5
CUX1-202ENST00000292538 AGAP3Q96P47 875 aa11.91□□□□□ -0.5
CUX1-202ENST00000292538 SMOQ99835 787 aa11.91□□□□□ -0.5
CUX1-202ENST00000292538 TRABDQ9H4I3 376 aa11.91□□□□□ -0.5
CUX1-202ENST00000292538 USP29Q9HBJ7 922 aa11.91□□□□□ -0.5
CUX1-202ENST00000292538 PIGVQ9NUD9 493 aa11.91□□□□□ -0.5
CUX1-202ENST00000292538 SAMD15Q9P1V8 674 aa11.91□□□□□ -0.5
CUX1-202ENST00000292538 CLUHO75153 1309 aa11.91□□□□□ -0.5
CUX1-202ENST00000292538 KPNA6O60684 536 aa11.9□□□□□ -0.5
CUX1-202ENST00000292538 FAM155BO75949 473 aa11.9□□□□□ -0.5
CUX1-202ENST00000292538 METTL18O95568 372 aa11.9□□□□□ -0.5
CUX1-202ENST00000292538 MSH2P43246 934 aa11.9□□□□□ -0.5
CUX1-202ENST00000292538 LPIN1Q14693 890 aa11.9□□□□□ -0.5
CUX1-202ENST00000292538 XKR4Q5GH76 650 aa11.9□□□□□ -0.5
CUX1-202ENST00000292538 SCN4BQ8IWT1 228 aa11.9□□□□□ -0.5
CUX1-202ENST00000292538 ATP11CQ8NB49 1132 aa11.9□□□□□ -0.5
CUX1-202ENST00000292538 SCAMP5Q8TAC9 235 aa11.9□□□□□ -0.5
CUX1-202ENST00000292538 STK32AQ8WU08 396 aa11.9□□□□□ -0.5
CUX1-202ENST00000292538 SMC6Q96SB8 1091 aa11.9□□□□□ -0.5
CUX1-202ENST00000292538 WDR83Q9BRX9 315 aaKnown RBP11.9□□□□□ -0.5
CUX1-202ENST00000292538 TMEM109Q9BVC6 243 aa11.9□□□□□ -0.5
CUX1-202ENST00000292538 FAM72CH0Y354 149 aa11.9□□□□□ -0.5
CUX1-202ENST00000292538 ADAMTS4O75173 837 aa11.9□□□□□ -0.5
CUX1-202ENST00000292538 GBP2P32456 591 aaPredicted RBP11.9□□□□□ -0.5
CUX1-202ENST00000292538 PHBP35232 272 aa11.9□□□□□ -0.5
CUX1-202ENST00000292538 TAZQ16635 292 aa11.9□□□□□ -0.5
CUX1-202ENST00000292538 SLC25A52Q3SY17 297 aa11.9□□□□□ -0.5
CUX1-202ENST00000292538 FAM72AQ5TYM5 149 aa11.9□□□□□ -0.5
CUX1-202ENST00000292538 FAM72DQ6L9T8 149 aa11.9□□□□□ -0.5
CUX1-202ENST00000292538 CCDC121Q6ZUS5 278 aa11.9□□□□□ -0.5
CUX1-202ENST00000292538 FAM72BQ86X60 149 aa11.9□□□□□ -0.5
CUX1-202ENST00000292538 PPM1NQ8N819 430 aa11.9□□□□□ -0.5
CUX1-202ENST00000292538 SPOCK2Q92563 424 aa11.9□□□□□ -0.5
CUX1-202ENST00000292538 MYLPFQ96A32 169 aa11.9□□□□□ -0.5
CUX1-202ENST00000292538 PGLYRP2Q96PD5 576 aa11.9□□□□□ -0.5
CUX1-202ENST00000292538 KLC2Q9H0B6 622 aa11.9□□□□□ -0.5
CUX1-202ENST00000292538 UBN1Q9NPG3 1134 aa11.9□□□□□ -0.5
CUX1-202ENST00000292538 NEFHP12036 1026 aa11.9□□□□□ -0.51
CUX1-202ENST00000292538 DRD4P21917 467 aa11.9□□□□□ -0.51
CUX1-202ENST00000292538 GCAP28676 217 aa11.9□□□□□ -0.51
CUX1-202ENST00000292538 LRPAP1P30533 357 aa11.9□□□□□ -0.51
CUX1-202ENST00000292538 OR1G1P47890 313 aa11.9□□□□□ -0.51
CUX1-202ENST00000292538 LHX1P48742 406 aa11.9□□□□□ -0.51
CUX1-202ENST00000292538 SPARCL1Q14515 664 aa11.9□□□□□ -0.51
CUX1-202ENST00000292538 MICALCLQ6ZW33 695 aa11.9□□□□□ -0.51
CUX1-202ENST00000292538 METTL23Q86XA0 190 aa11.9□□□□□ -0.51
CUX1-202ENST00000292538 GPR152Q8TDT2 470 aa11.9□□□□□ -0.51
CUX1-202ENST00000292538 TGS1Q96RS0 853 aaKnown RBP11.9□□□□□ -0.51
CUX1-202ENST00000292538 PAFAH2Q99487 392 aa11.9□□□□□ -0.51
CUX1-202ENST00000292538 POPDC2Q9HBU9 364 aa11.9□□□□□ -0.51
CUX1-202ENST00000292538 MTMR10Q9NXD2 777 aa11.9□□□□□ -0.51
CUX1-202ENST00000292538 DTLQ9NZJ0 730 aa11.9□□□□□ -0.51
CUX1-202ENST00000292538 STAP1Q9ULZ2 295 aa11.9□□□□□ -0.51
CUX1-202ENST00000292538 DPYSL4O14531 572 aa11.89□□□□□ -0.51
CUX1-202ENST00000292538 MDM4O15151 490 aa11.89□□□□□ -0.51
CUX1-202ENST00000292538 MFSD11O43934 449 aa11.89□□□□□ -0.51
CUX1-202ENST00000292538 ENDOD1O94919 500 aa11.89□□□□□ -0.51
CUX1-202ENST00000292538 ATP2A2P16615 1042 aaKnown RBP11.89□□□□□ -0.51
CUX1-202ENST00000292538 RPA3P35244 121 aaPredicted RBP11.89□□□□□ -0.51
CUX1-202ENST00000292538 TM4SF4P48230 202 aa11.89□□□□□ -0.51
CUX1-202ENST00000292538 GEMIN4P57678 1058 aaKnown RBP11.89□□□□□ -0.51
CUX1-202ENST00000292538 SESN2P58004 480 aaPredicted RBP11.89□□□□□ -0.51
CUX1-202ENST00000292538 HTRA3P83110 453 aa11.89□□□□□ -0.51
CUX1-202ENST00000292538 OLIG2Q13516 323 aa11.89□□□□□ -0.51
CUX1-202ENST00000292538 UPP1Q16831 310 aa11.89□□□□□ -0.51
CUX1-202ENST00000292538 KBTBD12Q3ZCT8 623 aa11.89□□□□□ -0.51
CUX1-202ENST00000292538 RWDD4Q6NW29 188 aaKnown RBP11.89□□□□□ -0.51
CUX1-202ENST00000292538 CEP128Q6ZU80 1094 aa11.89□□□□□ -0.51
CUX1-202ENST00000292538 VPS52Q8N1B4 723 aa11.89□□□□□ -0.51
CUX1-202ENST00000292538 RNF139Q8WU17 664 aa11.89□□□□□ -0.51
CUX1-202ENST00000292538 ZNF670Q9BS34 389 aa11.89□□□□□ -0.51
CUX1-202ENST00000292538 TMLHEQ9NVH6 421 aa11.89□□□□□ -0.51
CUX1-202ENST00000292538 PAK5Q9P286 719 aa11.89□□□□□ -0.51
CUX1-202ENST00000292538 PCDH10Q9P2E7 1040 aa11.89□□□□□ -0.51
CUX1-202ENST00000292538 EEF2KO00418 725 aaKnown RBP11.89□□□□□ -0.51
CUX1-202ENST00000292538 AMHP03971 560 aa11.89□□□□□ -0.51
CUX1-202ENST00000292538 TGM2P21980 687 aa11.89□□□□□ -0.51
CUX1-202ENST00000292538 GRIK1P39086 918 aa11.89□□□□□ -0.51
CUX1-202ENST00000292538 PTPN9P43378 593 aa11.89□□□□□ -0.51
CUX1-202ENST00000292538 EFHC2Q5JST6 749 aa11.89□□□□□ -0.51
CUX1-202ENST00000292538 RNF180Q86T96 592 aa11.89□□□□□ -0.51
CUX1-202ENST00000292538 TADA2BQ86TJ2 420 aa11.89□□□□□ -0.51
CUX1-202ENST00000292538 ZNF280BQ86YH2 543 aa11.89□□□□□ -0.51
CUX1-202ENST00000292538 B3GALT6Q96L58 329 aa11.89□□□□□ -0.51
CUX1-202ENST00000292538 GLT1D1Q96MS3 346 aa11.89□□□□□ -0.51
CUX1-202ENST00000292538 IL1RAPL1Q9NZN1 696 aa11.89□□□□□ -0.51
CUX1-202ENST00000292538 ZC3H7BQ9UGR2 993 aaKnown RBP11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms