RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 Q6ZNB5 142 aa13.41□□□□□ -0.26
CD44-203ENST00000278386 RSRC2Q7L4I2 434 aaKnown RBP13.41□□□□□ -0.26
CD44-203ENST00000278386 TTC39CQ8N584 583 aa13.41□□□□□ -0.26
CD44-203ENST00000278386 FBXL13Q8NEE6 735 aa13.41□□□□□ -0.26
CD44-203ENST00000278386 IPO4Q8TEX9 1081 aaKnown RBP13.41□□□□□ -0.26
CD44-203ENST00000278386 ARID3AQ99856 593 aa13.41□□□□□ -0.26
CD44-203ENST00000278386 GDPD2Q9HCC8 539 aa13.41□□□□□ -0.26
CD44-203ENST00000278386 CISHQ9NSE2 258 aa13.41□□□□□ -0.26
CD44-203ENST00000278386 TMEM74BQ9NUR3 256 aa13.41□□□□□ -0.26
CD44-203ENST00000278386 HCN2Q9UL51 889 aa13.41□□□□□ -0.26
CD44-203ENST00000278386 ZNF217O75362 1048 aa13.4□□□□□ -0.26
CD44-203ENST00000278386 PNOCQ13519 176 aa13.4□□□□□ -0.26
CD44-203ENST00000278386 KIAA1211LQ6NV74 962 aa13.4□□□□□ -0.26
CD44-203ENST00000278386 SCD5Q86SK9 330 aa13.4□□□□□ -0.26
CD44-203ENST00000278386 ARHGAP18Q8N392 663 aa13.4□□□□□ -0.26
CD44-203ENST00000278386 SLC4A11Q8NBS3 891 aa13.4□□□□□ -0.26
CD44-203ENST00000278386 DEFB124Q8NES8 71 aa13.4□□□□□ -0.26
CD44-203ENST00000278386 SEMA4DQ92854 862 aa13.4□□□□□ -0.26
CD44-203ENST00000278386 TMEM176AQ96HP8 235 aa13.4□□□□□ -0.26
CD44-203ENST00000278386 TSG101Q99816 390 aa13.4□□□□□ -0.26
CD44-203ENST00000278386 GTPBP2Q9BX10 602 aaKnown RBP13.4□□□□□ -0.26
CD44-203ENST00000278386 DCLK3Q9C098 648 aa13.4□□□□□ -0.26
CD44-203ENST00000278386 FSCN3Q9NQT6 498 aa13.4□□□□□ -0.26
CD44-203ENST00000278386 RMND1Q9NWS8 449 aa13.4□□□□□ -0.26
CD44-203ENST00000278386 RAB20Q9NX57 234 aa13.4□□□□□ -0.26
CD44-203ENST00000278386 CLIC5Q9NZA1 410 aa13.4□□□□□ -0.26
CD44-203ENST00000278386 PILRBQ9UKJ0 227 aa13.4□□□□□ -0.26
CD44-203ENST00000278386 STRIP2Q9ULQ0 834 aa13.4□□□□□ -0.26
CD44-203ENST00000278386 ZNF510Q9Y2H8 683 aa13.4□□□□□ -0.26
CD44-203ENST00000278386 IGHV1OR15-9A0A0B4J2B8 117 aa13.39□□□□□ -0.27
CD44-203ENST00000278386 NDUFS2O75306 463 aa13.39□□□□□ -0.27
CD44-203ENST00000278386 CEACAM1P13688 526 aa13.39□□□□□ -0.27
CD44-203ENST00000278386 CSRP1P21291 193 aaKnown RBP13.39□□□□□ -0.27
CD44-203ENST00000278386 HOXD12P35452 270 aa13.39□□□□□ -0.27
CD44-203ENST00000278386 RAD23BP54727 409 aa13.39□□□□□ -0.27
CD44-203ENST00000278386 COG7P83436 770 aa13.39□□□□□ -0.27
CD44-203ENST00000278386 ZNF33AQ06730 810 aa13.39□□□□□ -0.27
CD44-203ENST00000278386 STARD3Q14849 445 aa13.39□□□□□ -0.27
CD44-203ENST00000278386 DUOXA1Q1HG43 343 aa13.39□□□□□ -0.27
CD44-203ENST00000278386 GOLGA7BQ2TAP0 167 aa13.39□□□□□ -0.27
CD44-203ENST00000278386 SLC23A3Q6PIS1 610 aa13.39□□□□□ -0.27
CD44-203ENST00000278386 RABEPKQ7Z6M1 372 aa13.39□□□□□ -0.27
CD44-203ENST00000278386 PIGZQ86VD9 579 aa13.39□□□□□ -0.27
CD44-203ENST00000278386 HDDC3Q8N4P3 179 aa13.39□□□□□ -0.27
CD44-203ENST00000278386 HSPA12BQ96MM6 686 aa13.39□□□□□ -0.27
CD44-203ENST00000278386 GABRG3Q99928 467 aa13.39□□□□□ -0.27
CD44-203ENST00000278386 SLC6A17Q9H1V8 727 aa13.39□□□□□ -0.27
CD44-203ENST00000278386 SLC32A1Q9H598 525 aa13.39□□□□□ -0.27
CD44-203ENST00000278386 CD93Q9NPY3 652 aa13.39□□□□□ -0.27
CD44-203ENST00000278386 MARCH2Q9P0N8 246 aa13.39□□□□□ -0.27
CD44-203ENST00000278386 USP3Q9Y6I4 520 aa13.39□□□□□ -0.27
CD44-203ENST00000278386 SLC12A8A0AV02 714 aa13.38□□□□□ -0.27
CD44-203ENST00000278386 CYBBP04839 570 aa13.38□□□□□ -0.27
CD44-203ENST00000278386 CISD3P0C7P0 127 aa13.38□□□□□ -0.27
CD44-203ENST00000278386 CD19P15391 556 aa13.38□□□□□ -0.27
CD44-203ENST00000278386 CHKAP35790 457 aa13.38□□□□□ -0.27
CD44-203ENST00000278386 BCAT1P54687 386 aa13.38□□□□□ -0.27
CD44-203ENST00000278386 YWHAGP61981 247 aaKnown RBP eCLIP13.38□□□□□ -0.27
CD44-203ENST00000278386 CBWD6Q4V339 395 aa13.38□□□□□ -0.27
CD44-203ENST00000278386 CBWD3Q5JTY5 395 aa13.38□□□□□ -0.27
CD44-203ENST00000278386 CBWD5Q5RIA9 395 aa13.38□□□□□ -0.27
CD44-203ENST00000278386 PEAR1Q5VY43 1037 aaPredicted RBP13.38□□□□□ -0.27
CD44-203ENST00000278386 ARHGAP17Q68EM7 881 aa13.38□□□□□ -0.27
CD44-203ENST00000278386 ANKS1BQ7Z6G8 1248 aa13.38□□□□□ -0.27
CD44-203ENST00000278386 DENND1CQ8IV53 801 aa13.38□□□□□ -0.27
CD44-203ENST00000278386 RGL4Q8IZJ4 473 aa13.38□□□□□ -0.27
CD44-203ENST00000278386 CEP76Q8TAP6 659 aa13.38□□□□□ -0.27
CD44-203ENST00000278386 UCMAQ8WVF2 138 aa13.38□□□□□ -0.27
CD44-203ENST00000278386 TATDN2Q93075 761 aa13.38□□□□□ -0.27
CD44-203ENST00000278386 FAXDC2Q96IV6 333 aa13.38□□□□□ -0.27
CD44-203ENST00000278386 HESX1Q9UBX0 185 aa13.38□□□□□ -0.27
CD44-203ENST00000278386 TSPAN16Q9UKR8 245 aa13.38□□□□□ -0.27
CD44-203ENST00000278386 SLC6A14Q9UN76 642 aa13.38□□□□□ -0.27
CD44-203ENST00000278386 USP24Q9UPU5 2620 aa13.38□□□□□ -0.27
CD44-203ENST00000278386 MUC22E2RYF6 1773 aaPredicted RBP13.37□□□□□ -0.27
CD44-203ENST00000278386 GOLGA6L4A6NEF3 574 aa13.37□□□□□ -0.27
CD44-203ENST00000278386 MEI4A8MW99 385 aa13.37□□□□□ -0.27
CD44-203ENST00000278386 WASH3PC4AMC7 463 aa13.37□□□□□ -0.27
CD44-203ENST00000278386 GFRA2O00451 464 aa13.37□□□□□ -0.27
CD44-203ENST00000278386 SLC16A3O15427 465 aaKnown RBP13.37□□□□□ -0.27
CD44-203ENST00000278386 ZBED1O96006 694 aa13.37□□□□□ -0.27
CD44-203ENST00000278386 PENKP01210 267 aaPredicted RBP13.37□□□□□ -0.27
CD44-203ENST00000278386 KLKB1P03952 638 aa13.37□□□□□ -0.27
CD44-203ENST00000278386 SERPINF2P08697 491 aa13.37□□□□□ -0.27
CD44-203ENST00000278386 SPINK2P20155 84 aa13.37□□□□□ -0.27
CD44-203ENST00000278386 PRCPP42785 496 aa13.37□□□□□ -0.27
CD44-203ENST00000278386 TKTL1P51854 596 aa13.37□□□□□ -0.27
CD44-203ENST00000278386 MFAP3P55082 362 aa13.37□□□□□ -0.27
CD44-203ENST00000278386 YWHAEP62258 255 aaKnown RBP13.37□□□□□ -0.27
CD44-203ENST00000278386 GFPT1Q06210 699 aaPredicted RBP13.37□□□□□ -0.27
CD44-203ENST00000278386 CUL2Q13617 745 aa13.37□□□□□ -0.27
CD44-203ENST00000278386 GEN1Q17RS7 908 aa13.37□□□□□ -0.27
CD44-203ENST00000278386 SGO2Q562F6 1265 aa13.37□□□□□ -0.27
CD44-203ENST00000278386 RAB41Q5JT25 222 aa13.37□□□□□ -0.27
CD44-203ENST00000278386 FYB2Q5VWT5 728 aa13.37□□□□□ -0.27
CD44-203ENST00000278386 CACUL1Q86Y37 369 aa13.37□□□□□ -0.27
CD44-203ENST00000278386 SLC41A1Q8IVJ1 513 aa13.37□□□□□ -0.27
CD44-203ENST00000278386 ZNF276Q8N554 614 aa13.37□□□□□ -0.27
CD44-203ENST00000278386 TRIML1Q8N9V2 468 aa13.37□□□□□ -0.27
CD44-203ENST00000278386 ANKRD52Q8NB46 1076 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms