RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 NDRG1Q92597 394 aaKnown RBP15.9■□□□□ 0.14
SF3B4-201ENST00000271628 CCDC77Q9BR77 488 aa15.9■□□□□ 0.14
SF3B4-201ENST00000271628 FARP1Q9Y4F1 1045 aaPredicted RBP15.9■□□□□ 0.14
SF3B4-201ENST00000271628 HEY1Q9Y5J3 304 aa15.9■□□□□ 0.14
SF3B4-201ENST00000271628 TLDC2A0PJX2 215 aa15.89■□□□□ 0.13
SF3B4-201ENST00000271628 BCLAF3A2AJT9 711 aaKnown RBP15.89■□□□□ 0.13
SF3B4-201ENST00000271628 DCDC2CA8MYV0 355 aa15.89■□□□□ 0.13
SF3B4-201ENST00000271628 HHLA1C9JL84 531 aa15.89■□□□□ 0.13
SF3B4-201ENST00000271628 H0YHG0 523 aa15.89■□□□□ 0.13
SF3B4-201ENST00000271628 RGS16O15492 202 aaPredicted RBP15.89■□□□□ 0.13
SF3B4-201ENST00000271628 DDHD2O94830 711 aa15.89■□□□□ 0.13
SF3B4-201ENST00000271628 YY1P25490 414 aa15.89■□□□□ 0.13
SF3B4-201ENST00000271628 MAGEA4P43358 317 aa15.89■□□□□ 0.13
SF3B4-201ENST00000271628 RNASELQ05823 741 aaKnown RBP15.89■□□□□ 0.13
SF3B4-201ENST00000271628 XRCC4Q13426 336 aa15.89■□□□□ 0.13
SF3B4-201ENST00000271628 CLLU1OSQ5K130 101 aa15.89■□□□□ 0.13
SF3B4-201ENST00000271628 C4orf50Q6ZRC1 276 aa15.89■□□□□ 0.13
SF3B4-201ENST00000271628 CENPUQ71F23 418 aa15.89■□□□□ 0.13
SF3B4-201ENST00000271628 FAM131BQ86XD5 332 aa15.89■□□□□ 0.13
SF3B4-201ENST00000271628 FAM126BQ8IXS8 530 aa15.89■□□□□ 0.13
SF3B4-201ENST00000271628 COLGALT2Q8IYK4 626 aa15.89■□□□□ 0.13
SF3B4-201ENST00000271628 CCDC185Q8N715 623 aa15.89■□□□□ 0.13
SF3B4-201ENST00000271628 PKMYT1Q99640 499 aa15.89■□□□□ 0.13
SF3B4-201ENST00000271628 TRIM62Q9BVG3 475 aa15.89■□□□□ 0.13
SF3B4-201ENST00000271628 DMAP1Q9NPF5 467 aaPredicted RBP15.89■□□□□ 0.13
SF3B4-201ENST00000271628 MTMR10Q9NXD2 777 aa15.89■□□□□ 0.13
SF3B4-201ENST00000271628 NINJ2Q9NZG7 142 aa15.89■□□□□ 0.13
SF3B4-201ENST00000271628 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP15.88■□□□□ 0.13
SF3B4-201ENST00000271628 YJEFN3A6XGL0 299 aa15.88■□□□□ 0.13
SF3B4-201ENST00000271628 E7ENQ6 273 aa15.88■□□□□ 0.13
SF3B4-201ENST00000271628 PITPNM1O00562 1244 aa15.88■□□□□ 0.13
SF3B4-201ENST00000271628 F9P00740 461 aa15.88■□□□□ 0.13
SF3B4-201ENST00000271628 LTFP02788 710 aa15.88■□□□□ 0.13
SF3B4-201ENST00000271628 BDNFP23560 247 aa15.88■□□□□ 0.13
SF3B4-201ENST00000271628 RNF187Q5TA31 235 aaPredicted RBP15.88■□□□□ 0.13
SF3B4-201ENST00000271628 PM20D1Q6GTS8 502 aa15.88■□□□□ 0.13
SF3B4-201ENST00000271628 C4orf22Q6V702 233 aa15.88■□□□□ 0.13
SF3B4-201ENST00000271628 ZNF280BQ86YH2 543 aa15.88■□□□□ 0.13
SF3B4-201ENST00000271628 SH3TC2Q8TF17 1288 aa15.88■□□□□ 0.13
SF3B4-201ENST00000271628 PRCCQ92733 491 aaPredicted RBP15.88■□□□□ 0.13
SF3B4-201ENST00000271628 PGAP3Q96FM1 320 aaPredicted RBP15.88■□□□□ 0.13
SF3B4-201ENST00000271628 CABS1Q96KC9 395 aa15.88■□□□□ 0.13
SF3B4-201ENST00000271628 SERPINB12Q96P63 405 aa15.88■□□□□ 0.13
SF3B4-201ENST00000271628 CSPG4P5Q96PW8 444 aa15.88■□□□□ 0.13
SF3B4-201ENST00000271628 ACTR5Q9H9F9 607 aaPredicted RBP15.88■□□□□ 0.13
SF3B4-201ENST00000271628 PAK5Q9P286 719 aa15.88■□□□□ 0.13
SF3B4-201ENST00000271628 NRP1O14786 923 aa15.88■□□□□ 0.13
SF3B4-201ENST00000271628 TCEA3O75764 348 aa15.88■□□□□ 0.13
SF3B4-201ENST00000271628 AGTP01019 485 aa15.88■□□□□ 0.13
SF3B4-201ENST00000271628 ITGB1P05556 798 aa15.88■□□□□ 0.13
SF3B4-201ENST00000271628 USP17L7P0C7H9 530 aa15.88■□□□□ 0.13
SF3B4-201ENST00000271628 NCAM1P13591 858 aa15.88■□□□□ 0.13
SF3B4-201ENST00000271628 OR1G1P47890 313 aa15.88■□□□□ 0.13
SF3B4-201ENST00000271628 CACNA2D1P54289 1103 aa15.88■□□□□ 0.13
SF3B4-201ENST00000271628 ACTN3Q08043 901 aaPredicted RBP15.88■□□□□ 0.13
SF3B4-201ENST00000271628 GKAP1Q5VSY0 366 aaPredicted RBP15.88■□□□□ 0.13
SF3B4-201ENST00000271628 SYPL2Q5VXT5 272 aa15.88■□□□□ 0.13
SF3B4-201ENST00000271628 MFSD5Q6N075 450 aa15.88■□□□□ 0.13
SF3B4-201ENST00000271628 CCDC121Q6ZUS5 278 aa15.88■□□□□ 0.13
SF3B4-201ENST00000271628 ABI1Q8IZP0 508 aa15.88■□□□□ 0.13
SF3B4-201ENST00000271628 NAT8LQ8N9F0 302 aa15.88■□□□□ 0.13
SF3B4-201ENST00000271628 UHMK1Q8TAS1 419 aaKnown RBP15.88■□□□□ 0.13
SF3B4-201ENST00000271628 APBB2Q92870 758 aa15.88■□□□□ 0.13
SF3B4-201ENST00000271628 RTP4Q96DX8 246 aa15.88■□□□□ 0.13
SF3B4-201ENST00000271628 PWWP2AQ96N64 755 aa15.88■□□□□ 0.13
SF3B4-201ENST00000271628 KCTD15Q96SI1 283 aaPredicted RBP15.88■□□□□ 0.13
SF3B4-201ENST00000271628 C10orf88Q9H8K7 445 aa15.88■□□□□ 0.13
SF3B4-201ENST00000271628 TBC1D13Q9NVG8 400 aa15.88■□□□□ 0.13
SF3B4-201ENST00000271628 DNAJC17Q9NVM6 304 aaKnown RBP15.88■□□□□ 0.13
SF3B4-201ENST00000271628 NAALADL1Q9UQQ1 740 aa15.88■□□□□ 0.13
SF3B4-201ENST00000271628 PCDHB7Q9Y5E2 793 aa15.88■□□□□ 0.13
SF3B4-201ENST00000271628 FYNP06241 537 aa15.87■□□□□ 0.13
SF3B4-201ENST00000271628 ABHD2P08910 425 aa15.87■□□□□ 0.13
SF3B4-201ENST00000271628 ATP5DP30049 168 aa15.87■□□□□ 0.13
SF3B4-201ENST00000271628 MMP13P45452 471 aa15.87■□□□□ 0.13
SF3B4-201ENST00000271628 STAT4Q14765 748 aa15.87■□□□□ 0.13
SF3B4-201ENST00000271628 PLEKHG4Q58EX7 1191 aa15.87■□□□□ 0.13
SF3B4-201ENST00000271628 HFE2Q6ZVN8 426 aa15.87■□□□□ 0.13
SF3B4-201ENST00000271628 GPRIN1Q7Z2K8 1008 aa15.87■□□□□ 0.13
SF3B4-201ENST00000271628 CPLX4Q7Z7G2 160 aa15.87■□□□□ 0.13
SF3B4-201ENST00000271628 SPATA2LQ8IUW3 424 aaPredicted RBP15.87■□□□□ 0.13
SF3B4-201ENST00000271628 CACNA2D3Q8IZS8 1091 aa15.87■□□□□ 0.13
SF3B4-201ENST00000271628 OR10T2Q8NGX3 314 aa15.87■□□□□ 0.13
SF3B4-201ENST00000271628 SLC7A14Q8TBB6 771 aa15.87■□□□□ 0.13
SF3B4-201ENST00000271628 CPT1BQ92523 772 aa15.87■□□□□ 0.13
SF3B4-201ENST00000271628 SEC16BQ96JE7 1060 aa15.87■□□□□ 0.13
SF3B4-201ENST00000271628 USP29Q9HBJ7 922 aa15.87■□□□□ 0.13
SF3B4-201ENST00000271628 SAYSD1Q9NPB0 183 aa15.87■□□□□ 0.13
SF3B4-201ENST00000271628 TMEM30AQ9NV96 361 aa15.87■□□□□ 0.13
SF3B4-201ENST00000271628 ENPP3O14638 875 aa15.87■□□□□ 0.13
SF3B4-201ENST00000271628 ALOX15BO15296 676 aa15.87■□□□□ 0.13
SF3B4-201ENST00000271628 OAZ2O95190 189 aa15.87■□□□□ 0.13
SF3B4-201ENST00000271628 HNRNPH1P31943 449 aaKnown RBP15.87■□□□□ 0.13
SF3B4-201ENST00000271628 ARL4CP56559 192 aa15.87■□□□□ 0.13
SF3B4-201ENST00000271628 NME3Q13232 169 aa15.87■□□□□ 0.13
SF3B4-201ENST00000271628 HIF1AQ16665 826 aa15.87■□□□□ 0.13
SF3B4-201ENST00000271628 ARL13BQ3SXY8 428 aa15.87■□□□□ 0.13
SF3B4-201ENST00000271628 EFHC2Q5JST6 749 aa15.87■□□□□ 0.13
SF3B4-201ENST00000271628 OTUD1Q5VV17 481 aaPredicted RBP15.87■□□□□ 0.13
SF3B4-201ENST00000271628 BEND5Q7L4P6 421 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms