RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 NLRP7Q8WX94 980 aa13.09□□□□□ -0.31
LIG1-201ENST00000263274 PYDC1Q8WXC3 89 aa13.09□□□□□ -0.31
LIG1-201ENST00000263274 PGLYRP2Q96PD5 576 aa13.09□□□□□ -0.31
LIG1-201ENST00000263274 SNRNP25Q9BV90 132 aaKnown RBP13.09□□□□□ -0.31
LIG1-201ENST00000263274 GGA3Q9NZ52 723 aa13.09□□□□□ -0.31
LIG1-201ENST00000263274 WDR27A2RRH5 827 aa13.09□□□□□ -0.31
LIG1-201ENST00000263274 C19orf81C9J6K1 198 aa13.09□□□□□ -0.31
LIG1-201ENST00000263274 METTL18O95568 372 aa13.09□□□□□ -0.31
LIG1-201ENST00000263274 APOEP02649 317 aa13.09□□□□□ -0.31
LIG1-201ENST00000263274 C6orf222P0C671 652 aaPredicted RBP13.09□□□□□ -0.31
LIG1-201ENST00000263274 GTF2A2P52657 109 aa13.09□□□□□ -0.31
LIG1-201ENST00000263274 CACNA2D1P54289 1103 aa13.09□□□□□ -0.31
LIG1-201ENST00000263274 MAP3K10Q02779 954 aa13.09□□□□□ -0.31
LIG1-201ENST00000263274 USP4Q13107 963 aa13.09□□□□□ -0.31
LIG1-201ENST00000263274 FAM47CQ5HY64 1035 aa13.09□□□□□ -0.31
LIG1-201ENST00000263274 RIPOR1Q6ZS17 1223 aa13.09□□□□□ -0.31
LIG1-201ENST00000263274 HACE1Q8IYU2 909 aa13.09□□□□□ -0.31
LIG1-201ENST00000263274 ZNF276Q8N554 614 aa13.09□□□□□ -0.31
LIG1-201ENST00000263274 PTCD3Q96EY7 689 aaKnown RBP13.09□□□□□ -0.31
LIG1-201ENST00000263274 PHACTR1Q9C0D0 580 aa13.09□□□□□ -0.31
LIG1-201ENST00000263274 C2orf40Q9H1Z8 148 aa13.09□□□□□ -0.31
LIG1-201ENST00000263274 IFT122Q9HBG6 1241 aa13.09□□□□□ -0.31
LIG1-201ENST00000263274 NDE1Q9NXR1 346 aa13.09□□□□□ -0.31
LIG1-201ENST00000263274 RPS6KL1Q9Y6S9 549 aa13.09□□□□□ -0.31
LIG1-201ENST00000263274 RBBP6Q7Z6E9 1792 aaKnown RBP13.09□□□□□ -0.31
LIG1-201ENST00000263274 KIAA1217Q5T5P2 1943 aa13.08□□□□□ -0.31
LIG1-201ENST00000263274 LOXHD1Q8IVV2 1947 aa13.08□□□□□ -0.31
LIG1-201ENST00000263274 ANKRD33BA6NCL7 494 aa13.08□□□□□ -0.32
LIG1-201ENST00000263274 E7ESA3 106 aa13.08□□□□□ -0.32
LIG1-201ENST00000263274 OPHN1O60890 802 aa13.08□□□□□ -0.32
LIG1-201ENST00000263274 GPD2P43304 727 aa13.08□□□□□ -0.32
LIG1-201ENST00000263274 NEK3P51956 506 aa13.08□□□□□ -0.32
LIG1-201ENST00000263274 ATXN3P54252 364 aaPredicted RBP13.08□□□□□ -0.32
LIG1-201ENST00000263274 AP1B1Q10567 949 aa13.08□□□□□ -0.32
LIG1-201ENST00000263274 FASTKD1Q53R41 847 aaKnown RBP13.08□□□□□ -0.32
LIG1-201ENST00000263274 DALRD3Q5D0E6 543 aaKnown RBP13.08□□□□□ -0.32
LIG1-201ENST00000263274 KCNT2Q6UVM3 1135 aa13.08□□□□□ -0.32
LIG1-201ENST00000263274 METTL7BQ6UX53 244 aa13.08□□□□□ -0.32
LIG1-201ENST00000263274 TMPRSS6Q8IU80 811 aa13.08□□□□□ -0.32
LIG1-201ENST00000263274 UBR7Q8N806 425 aa13.08□□□□□ -0.32
LIG1-201ENST00000263274 STKLD1Q8NE28 680 aa13.08□□□□□ -0.32
LIG1-201ENST00000263274 B4GALNT2Q8NHY0 566 aa13.08□□□□□ -0.32
LIG1-201ENST00000263274 SLC16A10Q8TF71 515 aa13.08□□□□□ -0.32
LIG1-201ENST00000263274 SKA1Q96BD8 255 aa13.08□□□□□ -0.32
LIG1-201ENST00000263274 ANGPTL2Q9UKU9 493 aa13.08□□□□□ -0.32
LIG1-201ENST00000263274 APOBEC2Q9Y235 224 aaKnown RBP13.08□□□□□ -0.32
LIG1-201ENST00000263274 SOWAHBA6NEL2 793 aa13.08□□□□□ -0.32
LIG1-201ENST00000263274 E7ENQ6 273 aa13.08□□□□□ -0.32
LIG1-201ENST00000263274 TXNP10599 105 aaKnown RBP13.08□□□□□ -0.32
LIG1-201ENST00000263274 TFE3P19532 575 aaPredicted RBP13.08□□□□□ -0.32
LIG1-201ENST00000263274 CYP2F1P24903 491 aa13.08□□□□□ -0.32
LIG1-201ENST00000263274 ETV4P43268 484 aa13.08□□□□□ -0.32
LIG1-201ENST00000263274 TMEM132DQ14C87 1099 aa13.08□□□□□ -0.32
LIG1-201ENST00000263274 GSTCDQ8NEC7 633 aa13.08□□□□□ -0.32
LIG1-201ENST00000263274 PCDH19Q8TAB3 1148 aa13.08□□□□□ -0.32
LIG1-201ENST00000263274 FAM167AQ96KS9 214 aa13.08□□□□□ -0.32
LIG1-201ENST00000263274 NT5C1AQ9BXI3 368 aa13.08□□□□□ -0.32
LIG1-201ENST00000263274 TRIM4Q9C037 500 aa13.08□□□□□ -0.32
LIG1-201ENST00000263274 LHX5Q9H2C1 402 aa13.08□□□□□ -0.32
LIG1-201ENST00000263274 SSU72Q9NP77 194 aaKnown RBP13.08□□□□□ -0.32
LIG1-201ENST00000263274 BTBD7Q9P203 1132 aa13.08□□□□□ -0.32
LIG1-201ENST00000263274 EFR3BQ9Y2G0 817 aa13.08□□□□□ -0.32
LIG1-201ENST00000263274 LRCH1Q9Y2L9 728 aa13.08□□□□□ -0.32
LIG1-201ENST00000263274 TTLL3Q9Y4R7 772 aa13.08□□□□□ -0.32
LIG1-201ENST00000263274 CREB3O43889 395 aa13.07□□□□□ -0.32
LIG1-201ENST00000263274 RARBP10826 455 aa13.07□□□□□ -0.32
LIG1-201ENST00000263274 VDRP11473 427 aa13.07□□□□□ -0.32
LIG1-201ENST00000263274 PTPN7P35236 360 aa13.07□□□□□ -0.32
LIG1-201ENST00000263274 KCNJ11Q14654 390 aa13.07□□□□□ -0.32
LIG1-201ENST00000263274 N4BP2L1Q5TBK1 243 aaPredicted RBP13.07□□□□□ -0.32
LIG1-201ENST00000263274 VWA5B1Q5TIE3 1220 aa13.07□□□□□ -0.32
LIG1-201ENST00000263274 PMF1Q6P1K2 205 aa13.07□□□□□ -0.32
LIG1-201ENST00000263274 CCNJLQ8IV13 435 aa13.07□□□□□ -0.32
LIG1-201ENST00000263274 ENDOVQ8N8Q3 282 aaKnown RBP13.07□□□□□ -0.32
LIG1-201ENST00000263274 PPP4R1Q8TF05 950 aa13.07□□□□□ -0.32
LIG1-201ENST00000263274 CHADO15335 359 aa13.07□□□□□ -0.32
LIG1-201ENST00000263274 MAP3K13O43283 966 aa13.07□□□□□ -0.32
LIG1-201ENST00000263274 SPAG6O75602 509 aa13.07□□□□□ -0.32
LIG1-201ENST00000263274 ACADSP16219 412 aa13.07□□□□□ -0.32
LIG1-201ENST00000263274 SP100P23497 879 aaPredicted RBP13.07□□□□□ -0.32
LIG1-201ENST00000263274 TYK2P29597 1187 aa13.07□□□□□ -0.32
LIG1-201ENST00000263274 OAZ1P54368 228 aa13.07□□□□□ -0.32
LIG1-201ENST00000263274 ENPEPQ07075 957 aa13.07□□□□□ -0.32
LIG1-201ENST00000263274 TARBP2Q15633 366 aaKnown RBP13.07□□□□□ -0.32
LIG1-201ENST00000263274 BOLA3Q53S33 107 aa13.07□□□□□ -0.32
LIG1-201ENST00000263274 PPP1R26Q5T8A7 1209 aaPredicted RBP13.07□□□□□ -0.32
LIG1-201ENST00000263274 TRNP1Q6NT89 227 aa13.07□□□□□ -0.32
LIG1-201ENST00000263274 CAND1Q86VP6 1230 aaKnown RBP13.07□□□□□ -0.32
LIG1-201ENST00000263274 FAM131BQ86XD5 332 aa13.07□□□□□ -0.32
LIG1-201ENST00000263274 ATP2A3Q93084 1043 aa13.07□□□□□ -0.32
LIG1-201ENST00000263274 FRMD8P1Q9BZ68 369 aaPredicted RBP13.07□□□□□ -0.32
LIG1-201ENST00000263274 C20orf27Q9GZN8 174 aa13.07□□□□□ -0.32
LIG1-201ENST00000263274 PCDH18Q9HCL0 1135 aa13.07□□□□□ -0.32
LIG1-201ENST00000263274 XAB2Q9HCS7 855 aaKnown RBP13.07□□□□□ -0.32
LIG1-201ENST00000263274 TAGLN3Q9UI15 199 aa13.07□□□□□ -0.32
LIG1-201ENST00000263274 C2CD2Q9Y426 696 aa13.07□□□□□ -0.32
LIG1-201ENST00000263274 TRAFD1O14545 582 aaPredicted RBP13.07□□□□□ -0.32
LIG1-201ENST00000263274 HCRTO43612 131 aa13.07□□□□□ -0.32
LIG1-201ENST00000263274 USP12O75317 370 aa13.07□□□□□ -0.32
LIG1-201ENST00000263274 CILPO75339 1184 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms