RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 ENDOD1O94919 500 aa11.09□□□□□ -0.63
USP28-201ENST00000003302 OCRLQ01968 901 aa11.09□□□□□ -0.63
USP28-201ENST00000003302 OR52E8Q6IFG1 317 aa11.09□□□□□ -0.63
USP28-201ENST00000003302 PLD6Q8N2A8 252 aaKnown RBP11.09□□□□□ -0.63
USP28-201ENST00000003302 PHTF2Q8N3S3 785 aa11.09□□□□□ -0.63
USP28-201ENST00000003302 RNF169Q8NCN4 708 aa11.09□□□□□ -0.63
USP28-201ENST00000003302 CCHCR1Q8TD31 782 aa11.09□□□□□ -0.63
USP28-201ENST00000003302 TMEM176AQ96HP8 235 aa11.09□□□□□ -0.63
USP28-201ENST00000003302 VPS11Q9H270 941 aa11.09□□□□□ -0.63
USP28-201ENST00000003302 WDR27A2RRH5 827 aa11.09□□□□□ -0.63
USP28-201ENST00000003302 MCF2LO15068 1137 aa11.09□□□□□ -0.63
USP28-201ENST00000003302 PSMG1O95456 288 aa11.09□□□□□ -0.63
USP28-201ENST00000003302 LSM8O95777 96 aaKnown RBP11.09□□□□□ -0.63
USP28-201ENST00000003302 PDGFRBP09619 1106 aa11.09□□□□□ -0.63
USP28-201ENST00000003302 ETS2P15036 469 aa11.09□□□□□ -0.63
USP28-201ENST00000003302 SP100P23497 879 aaPredicted RBP11.09□□□□□ -0.63
USP28-201ENST00000003302 PTPN7P35236 360 aa11.09□□□□□ -0.63
USP28-201ENST00000003302 TUBB3Q13509 450 aa11.09□□□□□ -0.63
USP28-201ENST00000003302 ZNF667Q5HYK9 610 aa11.09□□□□□ -0.63
USP28-201ENST00000003302 LPCAT4Q643R3 524 aa11.09□□□□□ -0.63
USP28-201ENST00000003302 RIPOR1Q6ZS17 1223 aa11.09□□□□□ -0.63
USP28-201ENST00000003302 TUBGCP4Q9UGJ1 667 aa11.09□□□□□ -0.63
USP28-201ENST00000003302 LNPEPQ9UIQ6 1025 aa11.09□□□□□ -0.63
USP28-201ENST00000003302 PLLPQ9Y342 182 aa11.09□□□□□ -0.63
USP28-201ENST00000003302 ADM5C9JUS6 153 aa11.08□□□□□ -0.64
USP28-201ENST00000003302 CCDC130P13994 396 aa11.08□□□□□ -0.64
USP28-201ENST00000003302 LMNB2Q03252 620 aa11.08□□□□□ -0.64
USP28-201ENST00000003302 MPZL3Q6UWV2 235 aa11.08□□□□□ -0.64
USP28-201ENST00000003302 SULF1Q8IWU6 871 aa11.08□□□□□ -0.64
USP28-201ENST00000003302 TMEM134Q9H6X4 195 aa11.08□□□□□ -0.64
USP28-201ENST00000003302 CAB39LQ9H9S4 337 aa11.08□□□□□ -0.64
USP28-201ENST00000003302 CYP4F11Q9HBI6 524 aa11.08□□□□□ -0.64
USP28-201ENST00000003302 LDHAP00338 332 aaKnown RBP11.08□□□□□ -0.64
USP28-201ENST00000003302 ESRRAP11474 423 aaPredicted RBP11.08□□□□□ -0.64
USP28-201ENST00000003302 SLC18A1P54219 525 aa11.08□□□□□ -0.64
USP28-201ENST00000003302 SESN2P58004 480 aaPredicted RBP11.08□□□□□ -0.64
USP28-201ENST00000003302 USP4Q13107 963 aa11.08□□□□□ -0.64
USP28-201ENST00000003302 OLFML1Q6UWY5 402 aa11.08□□□□□ -0.64
USP28-201ENST00000003302 LBX2Q6XYB7 198 aa11.08□□□□□ -0.64
USP28-201ENST00000003302 TEX9Q8N6V9 391 aa11.08□□□□□ -0.64
USP28-201ENST00000003302 SH3TC2Q8TF17 1288 aa11.08□□□□□ -0.64
USP28-201ENST00000003302 NSL1Q96IY1 281 aa11.08□□□□□ -0.64
USP28-201ENST00000003302 FZD8Q9H461 694 aa11.08□□□□□ -0.64
USP28-201ENST00000003302 MAP3K20Q9NYL2 800 aaKnown RBP11.08□□□□□ -0.64
USP28-201ENST00000003302 ZNF112Q9UJU3 913 aa11.08□□□□□ -0.64
USP28-201ENST00000003302 NPTXRO95502 500 aa11.08□□□□□ -0.64
USP28-201ENST00000003302 POTEJP0CG39 1038 aa11.08□□□□□ -0.64
USP28-201ENST00000003302 GOT1P17174 413 aa11.08□□□□□ -0.64
USP28-201ENST00000003302 MUM1Q2TAK8 710 aa11.08□□□□□ -0.64
USP28-201ENST00000003302 ZPBP2Q6X784 338 aa11.08□□□□□ -0.64
USP28-201ENST00000003302 LRRC74BQ6ZQY2 392 aa11.08□□□□□ -0.64
USP28-201ENST00000003302 MAPK15Q8TD08 544 aa11.08□□□□□ -0.64
USP28-201ENST00000003302 OCEL1Q9H607 264 aa11.08□□□□□ -0.64
USP28-201ENST00000003302 TRIP12Q14669 1992 aaPredicted RBP11.08□□□□□ -0.64
USP28-201ENST00000003302 COPEO14579 308 aa11.08□□□□□ -0.64
USP28-201ENST00000003302 ALDH3A1P30838 453 aa11.08□□□□□ -0.64
USP28-201ENST00000003302 MLH1P40692 756 aa11.08□□□□□ -0.64
USP28-201ENST00000003302 ZNF143P52747 638 aaPredicted RBP11.08□□□□□ -0.64
USP28-201ENST00000003302 YWHAEP62258 255 aaKnown RBP11.08□□□□□ -0.64
USP28-201ENST00000003302 SURF1Q15526 300 aa11.08□□□□□ -0.64
USP28-201ENST00000003302 TSHZ1Q6ZSZ6 1077 aa11.08□□□□□ -0.64
USP28-201ENST00000003302 FAM131BQ86XD5 332 aa11.08□□□□□ -0.64
USP28-201ENST00000003302 HPDLQ96IR7 371 aa11.08□□□□□ -0.64
USP28-201ENST00000003302 RAB3IPQ96QF0 476 aaPredicted RBP11.08□□□□□ -0.64
USP28-201ENST00000003302 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.07□□□□□ -0.64
USP28-201ENST00000003302 IGKV6-21A0A0C4DH24 114 aa11.07□□□□□ -0.64
USP28-201ENST00000003302 NVLO15381 856 aaKnown RBP11.07□□□□□ -0.64
USP28-201ENST00000003302 USP2O75604 605 aaPredicted RBP11.07□□□□□ -0.64
USP28-201ENST00000003302 BEST1O76090 585 aa11.07□□□□□ -0.64
USP28-201ENST00000003302 JUNP05412 331 aaKnown RBP11.07□□□□□ -0.64
USP28-201ENST00000003302 CPOXP36551 454 aa11.07□□□□□ -0.64
USP28-201ENST00000003302 PGM1P36871 562 aa11.07□□□□□ -0.64
USP28-201ENST00000003302 GK3PQ14409 553 aa11.07□□□□□ -0.64
USP28-201ENST00000003302 DPY19L2Q6NUT2 758 aa11.07□□□□□ -0.64
USP28-201ENST00000003302 PDCD7Q8N8D1 485 aaKnown RBP11.07□□□□□ -0.64
USP28-201ENST00000003302 SEPT1Q8WYJ6 367 aa11.07□□□□□ -0.64
USP28-201ENST00000003302 SPATA33Q96N06 139 aa11.07□□□□□ -0.64
USP28-201ENST00000003302 TUBGCP5Q96RT8 1024 aa11.07□□□□□ -0.64
USP28-201ENST00000003302 APOL2Q9BQE5 337 aa11.07□□□□□ -0.64
USP28-201ENST00000003302 PHACTR1Q9C0D0 580 aa11.07□□□□□ -0.64
USP28-201ENST00000003302 PDZD7Q9H5P4 517 aa11.07□□□□□ -0.64
USP28-201ENST00000003302 MTF2Q9Y483 593 aaPredicted RBP11.07□□□□□ -0.64
USP28-201ENST00000003302 DOCK3Q8IZD9 2030 aa11.07□□□□□ -0.64
USP28-201ENST00000003302 RNASEH1O60930 286 aaKnown RBP11.07□□□□□ -0.64
USP28-201ENST00000003302 CNMDO75829 334 aa11.07□□□□□ -0.64
USP28-201ENST00000003302 ERVK-10P10266 1014 aa11.07□□□□□ -0.64
USP28-201ENST00000003302 KCNT2Q6UVM3 1135 aa11.07□□□□□ -0.64
USP28-201ENST00000003302 NAPRTQ6XQN6 538 aa11.07□□□□□ -0.64
USP28-201ENST00000003302 VPS52Q8N1B4 723 aa11.07□□□□□ -0.64
USP28-201ENST00000003302 IFT43Q96FT9 208 aa11.07□□□□□ -0.64
USP28-201ENST00000003302 DDX56Q9NY93 547 aaKnown RBP11.07□□□□□ -0.64
USP28-201ENST00000003302 G3BP2Q9UN86 482 aaKnown RBP11.07□□□□□ -0.64
USP28-201ENST00000003302 PDE4DIPQ5VU43 2346 aa11.07□□□□□ -0.64
USP28-201ENST00000003302 A0A1B0GTW7 788 aa11.07□□□□□ -0.64
USP28-201ENST00000003302 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.07□□□□□ -0.64
USP28-201ENST00000003302 ATP2A1O14983 1001 aa11.07□□□□□ -0.64
USP28-201ENST00000003302 AP1G2O75843 785 aa11.07□□□□□ -0.64
USP28-201ENST00000003302 KRT7P08729 469 aa11.07□□□□□ -0.64
USP28-201ENST00000003302 EDNRBP24530 442 aa11.07□□□□□ -0.64
USP28-201ENST00000003302 GRIA2P42262 883 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms