RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 RWDD2AQ9UIY3 292 aa12.24□□□□□ -0.45
CLN3-257ENST00000637110 NUDT5Q9UKK9 219 aa12.24□□□□□ -0.45
CLN3-257ENST00000637110 SLC8A2Q9UPR5 921 aa12.24□□□□□ -0.45
CLN3-257ENST00000637110 ADAMTS20P59510 1910 aa12.23□□□□□ -0.45
CLN3-257ENST00000637110 AKAP13Q12802 2813 aa12.23□□□□□ -0.45
CLN3-257ENST00000637110 A0A1W2PQH9 124 aa12.23□□□□□ -0.45
CLN3-257ENST00000637110 E2F8A0AVK6 867 aa12.23□□□□□ -0.45
CLN3-257ENST00000637110 FAM92AA1XBS5 289 aa12.23□□□□□ -0.45
CLN3-257ENST00000637110 HHLA1C9JL84 531 aa12.23□□□□□ -0.45
CLN3-257ENST00000637110 P4HA2O15460 535 aa12.23□□□□□ -0.45
CLN3-257ENST00000637110 RNF40O75150 1001 aa12.23□□□□□ -0.45
CLN3-257ENST00000637110 RHOBTB1O94844 696 aa12.23□□□□□ -0.45
CLN3-257ENST00000637110 TBX18O95935 607 aa12.23□□□□□ -0.45
CLN3-257ENST00000637110 ADH1CP00326 375 aa12.23□□□□□ -0.45
CLN3-257ENST00000637110 ZDHHC11BP0C7U3 371 aa12.23□□□□□ -0.45
CLN3-257ENST00000637110 VDRP11473 427 aa12.23□□□□□ -0.45
CLN3-257ENST00000637110 KIF11P52732 1056 aa12.23□□□□□ -0.45
CLN3-257ENST00000637110 CCINQ13939 588 aa12.23□□□□□ -0.45
CLN3-257ENST00000637110 DHCR24Q15392 516 aa12.23□□□□□ -0.45
CLN3-257ENST00000637110 C10orf120Q5SQS8 335 aa12.23□□□□□ -0.45
CLN3-257ENST00000637110 SNX30Q5VWJ9 437 aa12.23□□□□□ -0.45
CLN3-257ENST00000637110 ARHGAP17Q68EM7 881 aa12.23□□□□□ -0.45
CLN3-257ENST00000637110 NAIF1Q69YI7 327 aaPredicted RBP12.23□□□□□ -0.45
CLN3-257ENST00000637110 TCEAL6Q6IPX3 200 aa12.23□□□□□ -0.45
CLN3-257ENST00000637110 FOXR2Q6PJQ5 311 aa12.23□□□□□ -0.45
CLN3-257ENST00000637110 RRAGAQ7L523 313 aa12.23□□□□□ -0.45
CLN3-257ENST00000637110 PIGZQ86VD9 579 aa12.23□□□□□ -0.45
CLN3-257ENST00000637110 ANKRD52Q8NB46 1076 aa12.23□□□□□ -0.45
CLN3-257ENST00000637110 EHBP1Q8NDI1 1231 aa12.23□□□□□ -0.45
CLN3-257ENST00000637110 UBA3Q8TBC4 463 aa12.23□□□□□ -0.45
CLN3-257ENST00000637110 TCEAL3Q969E4 200 aa12.23□□□□□ -0.45
CLN3-257ENST00000637110 NUP62CLQ9H1M0 184 aa12.23□□□□□ -0.45
CLN3-257ENST00000637110 CLSTN2Q9H4D0 955 aa12.23□□□□□ -0.45
CLN3-257ENST00000637110 LRRC4Q9HBW1 653 aa12.23□□□□□ -0.45
CLN3-257ENST00000637110 FBRSL1Q9HCM7 1045 aaKnown RBP12.23□□□□□ -0.45
CLN3-257ENST00000637110 PNPLA8Q9NP80 782 aa12.23□□□□□ -0.45
CLN3-257ENST00000637110 LSM7Q9UK45 103 aaKnown RBP12.23□□□□□ -0.45
CLN3-257ENST00000637110 TSPAN16Q9UKR8 245 aa12.23□□□□□ -0.45
CLN3-257ENST00000637110 HELZP42694 1942 aaKnown RBP12.23□□□□□ -0.45
CLN3-257ENST00000637110 EML5Q05BV3 1969 aa12.22□□□□□ -0.45
CLN3-257ENST00000637110 MDM4O15151 490 aa12.22□□□□□ -0.45
CLN3-257ENST00000637110 CAVIN2O95810 425 aa12.22□□□□□ -0.45
CLN3-257ENST00000637110 TOP3BO95985 862 aaKnown RBP12.22□□□□□ -0.45
CLN3-257ENST00000637110 CYP17A1P05093 508 aa12.22□□□□□ -0.45
CLN3-257ENST00000637110 MTIF2P46199 727 aaKnown RBP12.22□□□□□ -0.45
CLN3-257ENST00000637110 PGFP49763 221 aa12.22□□□□□ -0.45
CLN3-257ENST00000637110 PSEN1P49768 467 aa12.22□□□□□ -0.45
CLN3-257ENST00000637110 SEC13P55735 322 aa12.22□□□□□ -0.45
CLN3-257ENST00000637110 CREB5Q02930 508 aa12.22□□□□□ -0.45
CLN3-257ENST00000637110 ANO4Q32M45 955 aa12.22□□□□□ -0.45
CLN3-257ENST00000637110 PLK5Q496M5 336 aa12.22□□□□□ -0.45
CLN3-257ENST00000637110 FBXO43Q4G163 708 aa12.22□□□□□ -0.45
CLN3-257ENST00000637110 BTBD8Q5XKL5 378 aa12.22□□□□□ -0.45
CLN3-257ENST00000637110 RSRC2Q7L4I2 434 aaKnown RBP12.22□□□□□ -0.45
CLN3-257ENST00000637110 MIB1Q86YT6 1006 aa12.22□□□□□ -0.45
CLN3-257ENST00000637110 TRIM59Q8IWR1 403 aa12.22□□□□□ -0.45
CLN3-257ENST00000637110 ADGRG2Q8IZP9 1017 aa12.22□□□□□ -0.45
CLN3-257ENST00000637110 MLKLQ8NB16 471 aa12.22□□□□□ -0.45
CLN3-257ENST00000637110 CNOT6LQ96LI5 555 aaKnown RBP12.22□□□□□ -0.45
CLN3-257ENST00000637110 GBP4Q96PP9 640 aa12.22□□□□□ -0.45
CLN3-257ENST00000637110 NMUR1Q9HB89 426 aa12.22□□□□□ -0.45
CLN3-257ENST00000637110 TMEM9BQ9NQ34 198 aa12.22□□□□□ -0.45
CLN3-257ENST00000637110 C2orf42Q9NWW7 574 aa12.22□□□□□ -0.45
CLN3-257ENST00000637110 DACH1Q9UI36 760 aa12.22□□□□□ -0.45
CLN3-257ENST00000637110 RASAL2Q9UJF2 1139 aa12.22□□□□□ -0.45
CLN3-257ENST00000637110 KIAA1257Q9ULG3 409 aa12.22□□□□□ -0.45
CLN3-257ENST00000637110 MSRB2Q9Y3D2 182 aa12.22□□□□□ -0.45
CLN3-257ENST00000637110 MYO16Q9Y6X6 1858 aa12.22□□□□□ -0.45
CLN3-257ENST00000637110 ATG2BQ96BY7 2078 aa12.22□□□□□ -0.45
CLN3-257ENST00000637110 NUP205Q92621 2012 aa12.21□□□□□ -0.45
CLN3-257ENST00000637110 EIF4E1BA6NMX2 242 aaKnown RBP12.21□□□□□ -0.45
CLN3-257ENST00000637110 PMM2O15305 246 aa12.21□□□□□ -0.45
CLN3-257ENST00000637110 APODP05090 189 aa12.21□□□□□ -0.45
CLN3-257ENST00000637110 HMBSP08397 361 aa12.21□□□□□ -0.45
CLN3-257ENST00000637110 ADH5P11766 374 aa12.21□□□□□ -0.45
CLN3-257ENST00000637110 KRT5P13647 590 aa12.21□□□□□ -0.45
CLN3-257ENST00000637110 RDXP35241 583 aaKnown RBP12.21□□□□□ -0.45
CLN3-257ENST00000637110 PLA2G4AP47712 749 aa12.21□□□□□ -0.45
CLN3-257ENST00000637110 SLC6A11P48066 632 aa12.21□□□□□ -0.45
CLN3-257ENST00000637110 PXNP49023 591 aaPredicted RBP12.21□□□□□ -0.45
CLN3-257ENST00000637110 TKTL1P51854 596 aa12.21□□□□□ -0.45
CLN3-257ENST00000637110 BCAT1P54687 386 aa12.21□□□□□ -0.45
CLN3-257ENST00000637110 GAD2Q05329 585 aa12.21□□□□□ -0.45
CLN3-257ENST00000637110 PDE4CQ08493 712 aa12.21□□□□□ -0.45
CLN3-257ENST00000637110 BST2Q10589 180 aaKnown RBP12.21□□□□□ -0.45
CLN3-257ENST00000637110 LY6G5CQ5SRR4 150 aa12.21□□□□□ -0.45
CLN3-257ENST00000637110 RHBDF2Q6PJF5 856 aa12.21□□□□□ -0.45
CLN3-257ENST00000637110 CCDC186Q7Z3E2 898 aa12.21□□□□□ -0.45
CLN3-257ENST00000637110 ARHGEF19Q8IW93 802 aa12.21□□□□□ -0.45
CLN3-257ENST00000637110 BBS7Q8IWZ6 715 aa12.21□□□□□ -0.45
CLN3-257ENST00000637110 SIX6OS1Q8N1H7 587 aa12.21□□□□□ -0.45
CLN3-257ENST00000637110 ARHGAP18Q8N392 663 aa12.21□□□□□ -0.45
CLN3-257ENST00000637110 CAMKK1Q8N5S9 505 aa12.21□□□□□ -0.45
CLN3-257ENST00000637110 KIAA1958Q8N8K9 716 aa12.21□□□□□ -0.45
CLN3-257ENST00000637110 NAT16Q8N8M0 369 aa12.21□□□□□ -0.45
CLN3-257ENST00000637110 RPLP0P6Q8NHW5 317 aa12.21□□□□□ -0.45
CLN3-257ENST00000637110 CCDC26Q8TAB7 109 aa12.21□□□□□ -0.45
CLN3-257ENST00000637110 KAT5Q92993 513 aa12.21□□□□□ -0.45
CLN3-257ENST00000637110 IPO9Q96P70 1041 aaKnown RBP12.21□□□□□ -0.45
CLN3-257ENST00000637110 CDK5RAP1Q96SZ6 601 aaKnown RBP12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms