RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 NME3Q13232 169 aa17.56■□□□□ 0.4
CLN3-252ENST00000636907 HLTFQ14527 1009 aaKnown RBP eCLIP17.56■□□□□ 0.4
CLN3-252ENST00000636907 PPP1R7Q15435 360 aa17.56■□□□□ 0.4
CLN3-252ENST00000636907 DPYSL2Q16555 572 aa17.56■□□□□ 0.4
CLN3-252ENST00000636907 FAM153CQ494X1 144 aa17.56■□□□□ 0.4
CLN3-252ENST00000636907 EMBQ6PCB8 327 aa17.56■□□□□ 0.4
CLN3-252ENST00000636907 DRICH1Q6PGQ1 229 aaPredicted RBP17.56■□□□□ 0.4
CLN3-252ENST00000636907 RNF19BQ6ZMZ0 732 aa17.56■□□□□ 0.4
CLN3-252ENST00000636907 SND1Q7KZF4 910 aaKnown RBP eCLIP17.56■□□□□ 0.41e-8■■■■□ 19.4
CLN3-252ENST00000636907 HDXQ7Z353 690 aa17.56■□□□□ 0.4
CLN3-252ENST00000636907 CMTR2Q8IYT2 770 aaKnown RBP17.56■□□□□ 0.4
CLN3-252ENST00000636907 EIF1ADQ8N9N8 165 aaKnown RBP17.56■□□□□ 0.4
CLN3-252ENST00000636907 GRK7Q8WTQ7 553 aa17.56■□□□□ 0.4
CLN3-252ENST00000636907 RIN2Q8WYP3 895 aaPredicted RBP17.56■□□□□ 0.4
CLN3-252ENST00000636907 ZNF558Q96NG5 402 aa17.56■□□□□ 0.4
CLN3-252ENST00000636907 RNF157Q96PX1 679 aa17.56■□□□□ 0.4
CLN3-252ENST00000636907 MAK16Q9BXY0 300 aaKnown RBP17.56■□□□□ 0.4
CLN3-252ENST00000636907 OXCT2Q9BYC2 517 aaPredicted RBP17.56■□□□□ 0.4
CLN3-252ENST00000636907 DHX35Q9H5Z1 703 aaKnown RBP17.56■□□□□ 0.4
CLN3-252ENST00000636907 PIGVQ9NUD9 493 aa17.56■□□□□ 0.4
CLN3-252ENST00000636907 SAE1Q9UBE0 346 aaPredicted RBP17.56■□□□□ 0.4
CLN3-252ENST00000636907 FAM153AQ9UHL3 310 aa17.56■□□□□ 0.4
CLN3-252ENST00000636907 FEZ2Q9UHY8 353 aaPredicted RBP17.56■□□□□ 0.4
CLN3-252ENST00000636907 SNX24Q9Y343 169 aa17.56■□□□□ 0.4
CLN3-252ENST00000636907 CDY1Q9Y6F8 540 aa17.56■□□□□ 0.4
CLN3-252ENST00000636907 MRPL42Q9Y6G3 142 aaKnown RBP17.56■□□□□ 0.4
CLN3-252ENST00000636907 PTPRSQ13332 1948 aa17.56■□□□□ 0.4
CLN3-252ENST00000636907 MAP2K7O14733 419 aa17.55■□□□□ 0.4
CLN3-252ENST00000636907 OTUD4Q01804 1114 aaKnown RBP17.55■□□□□ 0.4
CLN3-252ENST00000636907 BYSLQ13895 437 aaKnown RBP17.55■□□□□ 0.4
CLN3-252ENST00000636907 CASP8Q14790 479 aa17.55■□□□□ 0.4
CLN3-252ENST00000636907 ANKRD20A8PQ5CZ79 823 aa17.55■□□□□ 0.4
CLN3-252ENST00000636907 PPP6R3Q5H9R7 873 aaPredicted RBP17.55■□□□□ 0.4
CLN3-252ENST00000636907 VSIG1Q86XK7 387 aa17.55■□□□□ 0.4
CLN3-252ENST00000636907 NUP93Q8N1F7 819 aa17.55■□□□□ 0.4
CLN3-252ENST00000636907 SLC39A11Q8N1S5 342 aa17.55■□□□□ 0.4
CLN3-252ENST00000636907 ACTL9Q8TC94 416 aa17.55■□□□□ 0.4
CLN3-252ENST00000636907 CAVIN3Q969G5 261 aa17.55■□□□□ 0.4
CLN3-252ENST00000636907 KCTD15Q96SI1 283 aaPredicted RBP17.55■□□□□ 0.4
CLN3-252ENST00000636907 CRISPLD1Q9H336 500 aa17.55■□□□□ 0.4
CLN3-252ENST00000636907 MTMR10Q9NXD2 777 aa17.55■□□□□ 0.4
CLN3-252ENST00000636907 MTRRQ9UBK8 725 aa17.55■□□□□ 0.4
CLN3-252ENST00000636907 FZD10Q9ULW2 581 aa17.55■□□□□ 0.4
CLN3-252ENST00000636907 ADAM12O43184 909 aa17.55■□□□□ 0.4
CLN3-252ENST00000636907 PECAM1P16284 738 aaPredicted RBP17.55■□□□□ 0.4
CLN3-252ENST00000636907 RPL21P46778 160 aaKnown RBP17.55■□□□□ 0.4
CLN3-252ENST00000636907 DRG2P55039 364 aaKnown RBP17.55■□□□□ 0.4
CLN3-252ENST00000636907 VCPP55072 806 aaKnown RBP17.55■□□□□ 0.4
CLN3-252ENST00000636907 YWHAGP61981 247 aaKnown RBP eCLIP17.55■□□□□ 0.4
CLN3-252ENST00000636907 OASLQ15646 514 aaKnown RBP17.55■□□□□ 0.4
CLN3-252ENST00000636907 PSMD5Q16401 504 aa17.55■□□□□ 0.4
CLN3-252ENST00000636907 SYDE1Q6ZW31 735 aaPredicted RBP17.55■□□□□ 0.4
CLN3-252ENST00000636907 TTC13Q8NBP0 860 aa17.55■□□□□ 0.4
CLN3-252ENST00000636907 FBXO22Q8NEZ5 403 aa17.55■□□□□ 0.4
CLN3-252ENST00000636907 SLC35B2Q8TB61 432 aa17.55■□□□□ 0.4
CLN3-252ENST00000636907 SPPL2BQ8TCT7 592 aa17.55■□□□□ 0.4
CLN3-252ENST00000636907 PIK3R5Q8WYR1 880 aa17.55■□□□□ 0.4
CLN3-252ENST00000636907 FAF2Q96CS3 445 aa17.55■□□□□ 0.4
CLN3-252ENST00000636907 PGAP3Q96FM1 320 aaPredicted RBP17.55■□□□□ 0.4
CLN3-252ENST00000636907 ZNF670Q9BS34 389 aa17.55■□□□□ 0.4
CLN3-252ENST00000636907 WDR6Q9NNW5 1121 aaKnown RBP17.55■□□□□ 0.4
CLN3-252ENST00000636907 TMPRSS4Q9NRS4 437 aa17.55■□□□□ 0.4
CLN3-252ENST00000636907 RRN3Q9NYV6 651 aa17.55■□□□□ 0.4
CLN3-252ENST00000636907 SLC27A5Q9Y2P5 690 aa17.55■□□□□ 0.4
CLN3-252ENST00000636907 NEU2Q9Y3R4 380 aa17.55■□□□□ 0.4
CLN3-252ENST00000636907 ALPK3Q96L96 1907 aa17.55■□□□□ 0.4
CLN3-252ENST00000636907 ZNF487B1APH4 448 aa17.54■□□□□ 0.4
CLN3-252ENST00000636907 APOC4-APOC2K7ER74 178 aa17.54■□□□□ 0.4
CLN3-252ENST00000636907 SOAT2O75908 522 aa17.54■□□□□ 0.4
CLN3-252ENST00000636907 GAS8O95995 478 aa17.54■□□□□ 0.4
CLN3-252ENST00000636907 APOC2P02655 101 aa17.54■□□□□ 0.4
CLN3-252ENST00000636907 RPL17P18621 184 aaKnown RBP17.54■□□□□ 0.4
CLN3-252ENST00000636907 LAG3P18627 525 aa17.54■□□□□ 0.4
CLN3-252ENST00000636907 PGFP49763 221 aa17.54■□□□□ 0.4
CLN3-252ENST00000636907 SMARCB1Q12824 385 aa17.54■□□□□ 0.4
CLN3-252ENST00000636907 PTK6Q13882 451 aa17.54■□□□□ 0.4
CLN3-252ENST00000636907 TFDP2Q14188 446 aa17.54■□□□□ 0.4
CLN3-252ENST00000636907 BEND5Q7L4P6 421 aa17.54■□□□□ 0.4
CLN3-252ENST00000636907 SCD5Q86SK9 330 aa17.54■□□□□ 0.4
CLN3-252ENST00000636907 PYROXD2Q8N2H3 581 aa17.54■□□□□ 0.4
CLN3-252ENST00000636907 PQLC3Q8N755 202 aa17.54■□□□□ 0.4
CLN3-252ENST00000636907 COLGALT1Q8NBJ5 622 aa17.54■□□□□ 0.4
CLN3-252ENST00000636907 PCDH19Q8TAB3 1148 aa17.54■□□□□ 0.4
CLN3-252ENST00000636907 TRAF3IP1Q8TDR0 691 aaPredicted RBP17.54■□□□□ 0.4
CLN3-252ENST00000636907 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.54■□□□□ 0.45e-8■■■■■ 65.3
CLN3-252ENST00000636907 BADQ92934 168 aa17.54■□□□□ 0.4
CLN3-252ENST00000636907 NKD2Q969F2 451 aaPredicted RBP17.54■□□□□ 0.4
CLN3-252ENST00000636907 YME1L1Q96TA2 773 aa17.54■□□□□ 0.4
CLN3-252ENST00000636907 FAM204AQ9H8W3 233 aa17.54■□□□□ 0.4
CLN3-252ENST00000636907 DDIT4Q9NX09 232 aa17.54■□□□□ 0.4
CLN3-252ENST00000636907 GRHL1Q9NZI5 618 aa17.54■□□□□ 0.4
CLN3-252ENST00000636907 ZNF148Q9UQR1 794 aa17.54■□□□□ 0.4
CLN3-252ENST00000636907 DRG1Q9Y295 367 aaKnown RBP17.54■□□□□ 0.4
CLN3-252ENST00000636907 BACE2Q9Y5Z0 518 aa17.54■□□□□ 0.4
CLN3-252ENST00000636907 MYO16Q9Y6X6 1858 aa17.53■□□□□ 0.4
CLN3-252ENST00000636907 ZBBXA8MT70 800 aa17.53■□□□□ 0.4
CLN3-252ENST00000636907 SOD2P04179 222 aa17.53■□□□□ 0.4
CLN3-252ENST00000636907 HAPLN1P10915 354 aaPredicted RBP17.53■□□□□ 0.4
CLN3-252ENST00000636907 USP46P62068 366 aa17.53■□□□□ 0.4
CLN3-252ENST00000636907 ROR1Q01973 937 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms