RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 CCDC89Q8N998 374 aa11.01□□□□□ -0.65
CLN3-248ENST00000636355 BBOF1Q8ND07 529 aa11.01□□□□□ -0.65
CLN3-248ENST00000636355 ATL2Q8NHH9 583 aa11.01□□□□□ -0.65
CLN3-248ENST00000636355 SLC35B2Q8TB61 432 aa11.01□□□□□ -0.65
CLN3-248ENST00000636355 PHOSPHO2Q8TCD6 241 aa11.01□□□□□ -0.65
CLN3-248ENST00000636355 SP7Q8TDD2 431 aaPredicted RBP11.01□□□□□ -0.65
CLN3-248ENST00000636355 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.01□□□□□ -0.65
CLN3-248ENST00000636355 BCL7CQ8WUZ0 217 aaPredicted RBP11.01□□□□□ -0.65
CLN3-248ENST00000636355 CLP1Q92989 425 aaKnown RBP11.01□□□□□ -0.65
CLN3-248ENST00000636355 RNF25Q96BH1 459 aaPredicted RBP11.01□□□□□ -0.65
CLN3-248ENST00000636355 TMEM209Q96SK2 561 aa11.01□□□□□ -0.65
CLN3-248ENST00000636355 CDK5RAP1Q96SZ6 601 aaKnown RBP11.01□□□□□ -0.65
CLN3-248ENST00000636355 YME1L1Q96TA2 773 aa11.01□□□□□ -0.65
CLN3-248ENST00000636355 TTLL2Q9BWV7 592 aa11.01□□□□□ -0.65
CLN3-248ENST00000636355 TSPYL1Q9H0U9 437 aa11.01□□□□□ -0.65
CLN3-248ENST00000636355 ACBD3Q9H3P7 528 aa11.01□□□□□ -0.65
CLN3-248ENST00000636355 PCDH18Q9HCL0 1135 aa11.01□□□□□ -0.65
CLN3-248ENST00000636355 EPB41L5Q9HCM4 733 aa11.01□□□□□ -0.65
CLN3-248ENST00000636355 CLIC5Q9NZA1 410 aa11.01□□□□□ -0.65
CLN3-248ENST00000636355 AFF4Q9UHB7 1163 aaKnown RBP11.01□□□□□ -0.65
CLN3-248ENST00000636355 DRG1Q9Y295 367 aaKnown RBP11.01□□□□□ -0.65
CLN3-248ENST00000636355 RWDD3Q9Y3V2 267 aa11.01□□□□□ -0.65
CLN3-248ENST00000636355 PDE4DIPQ5VU43 2346 aa11□□□□□ -0.65
CLN3-248ENST00000636355 CFAP69A5D8W1 941 aa11□□□□□ -0.65
CLN3-248ENST00000636355 PI4K2BG5E9Z4 385 aa11□□□□□ -0.65
CLN3-248ENST00000636355 H3BRJ5 948 aa11□□□□□ -0.65
CLN3-248ENST00000636355 MCF2LO15068 1137 aa11□□□□□ -0.65
CLN3-248ENST00000636355 IRAK2O43187 625 aa11□□□□□ -0.65
CLN3-248ENST00000636355 UPP2O95045 317 aa11□□□□□ -0.65
CLN3-248ENST00000636355 FGBP02675 491 aa11□□□□□ -0.65
CLN3-248ENST00000636355 URODP06132 367 aa11□□□□□ -0.65
CLN3-248ENST00000636355 USP17L7P0C7H9 530 aa11□□□□□ -0.65
CLN3-248ENST00000636355 HAPLN1P10915 354 aaPredicted RBP11□□□□□ -0.65
CLN3-248ENST00000636355 NCAM1P13591 858 aa11□□□□□ -0.65
CLN3-248ENST00000636355 CYP2F1P24903 491 aa11□□□□□ -0.65
CLN3-248ENST00000636355 ARL4AP40617 200 aa11□□□□□ -0.65
CLN3-248ENST00000636355 HCAR3P49019 387 aa11□□□□□ -0.65
CLN3-248ENST00000636355 NR2C2P49116 596 aa11□□□□□ -0.65
CLN3-248ENST00000636355 TUFMP49411 452 aaKnown RBP11□□□□□ -0.65
CLN3-248ENST00000636355 YWHAGP61981 247 aaKnown RBP eCLIP11□□□□□ -0.65
CLN3-248ENST00000636355 ROR1Q01973 937 aa11□□□□□ -0.65
CLN3-248ENST00000636355 DEUP1Q05D60 604 aa11□□□□□ -0.65
CLN3-248ENST00000636355 BYSLQ13895 437 aaKnown RBP11□□□□□ -0.65
CLN3-248ENST00000636355 NOMO1Q15155 1222 aa11□□□□□ -0.65
CLN3-248ENST00000636355 OASLQ15646 514 aaKnown RBP11□□□□□ -0.65
CLN3-248ENST00000636355 BSPRYQ5W0U4 402 aa11□□□□□ -0.65
CLN3-248ENST00000636355 SLC9A4Q6AI14 798 aa11□□□□□ -0.65
CLN3-248ENST00000636355 KIAA1841Q6NSI8 718 aa11□□□□□ -0.65
CLN3-248ENST00000636355 TTC27Q6P3X3 843 aa11□□□□□ -0.65
CLN3-248ENST00000636355 CEP128Q6ZU80 1094 aa11□□□□□ -0.65
CLN3-248ENST00000636355 BZW1Q7L1Q6 419 aaKnown RBP11□□□□□ -0.65
CLN3-248ENST00000636355 HDXQ7Z353 690 aa11□□□□□ -0.65
CLN3-248ENST00000636355 PDZD8Q8NEN9 1154 aa11□□□□□ -0.65
CLN3-248ENST00000636355 FBXO22Q8NEZ5 403 aa11□□□□□ -0.65
CLN3-248ENST00000636355 HDAC7Q8WUI4 952 aa11□□□□□ -0.65
CLN3-248ENST00000636355 HSPH1Q92598 858 aa11□□□□□ -0.65
CLN3-248ENST00000636355 HAUS1Q96CS2 278 aa11□□□□□ -0.65
CLN3-248ENST00000636355 SERPINB11Q96P15 392 aa11□□□□□ -0.65
CLN3-248ENST00000636355 RNF157Q96PX1 679 aa11□□□□□ -0.65
CLN3-248ENST00000636355 HERPUD2Q9BSE4 406 aa11□□□□□ -0.65
CLN3-248ENST00000636355 HTATIP2Q9BUP3 242 aa11□□□□□ -0.65
CLN3-248ENST00000636355 CALN1Q9BXU9 219 aa11□□□□□ -0.65
CLN3-248ENST00000636355 RHOBTB2Q9BYZ6 727 aa11□□□□□ -0.65
CLN3-248ENST00000636355 FAM204AQ9H8W3 233 aa11□□□□□ -0.65
CLN3-248ENST00000636355 KLHL11Q9NVR0 708 aa11□□□□□ -0.65
CLN3-248ENST00000636355 WHRNQ9P202 907 aa11□□□□□ -0.65
CLN3-248ENST00000636355 FNIP2Q9P278 1114 aa11□□□□□ -0.65
CLN3-248ENST00000636355 HCSTQ9UBK5 93 aa11□□□□□ -0.65
CLN3-248ENST00000636355 PCSK1NQ9UHG2 260 aa11□□□□□ -0.65
CLN3-248ENST00000636355 FZD10Q9ULW2 581 aa11□□□□□ -0.65
CLN3-248ENST00000636355 LZTS1Q9Y250 596 aa11□□□□□ -0.65
CLN3-248ENST00000636355 INSL6Q9Y581 213 aa11□□□□□ -0.65
CLN3-248ENST00000636355 PCDHB12Q9Y5F1 795 aa11□□□□□ -0.65
CLN3-248ENST00000636355 RAD54BQ9Y620 910 aa11□□□□□ -0.65
CLN3-248ENST00000636355 MRPL42Q9Y6G3 142 aaKnown RBP11□□□□□ -0.65
CLN3-248ENST00000636355 OBSL1O75147 1896 aa11□□□□□ -0.65
CLN3-248ENST00000636355 PLXNA4Q9HCM2 1894 aa11□□□□□ -0.65
CLN3-248ENST00000636355 M0QYT0 321 aa10.99□□□□□ -0.65
CLN3-248ENST00000636355 SMAPO00193 183 aa10.99□□□□□ -0.65
CLN3-248ENST00000636355 APOL1O14791 398 aa10.99□□□□□ -0.65
CLN3-248ENST00000636355 CST8O60676 142 aa10.99□□□□□ -0.65
CLN3-248ENST00000636355 C1RP00736 705 aa10.99□□□□□ -0.65
CLN3-248ENST00000636355 FYNP06241 537 aa10.99□□□□□ -0.65
CLN3-248ENST00000636355 OR4Q2P0C623 313 aa10.99□□□□□ -0.65
CLN3-248ENST00000636355 SLC2A3P11169 496 aa10.99□□□□□ -0.65
CLN3-248ENST00000636355 L1CAMP32004 1257 aa10.99□□□□□ -0.65
CLN3-248ENST00000636355 CXCR3P49682 368 aa10.99□□□□□ -0.65
CLN3-248ENST00000636355 NDUFV1P49821 464 aa10.99□□□□□ -0.65
CLN3-248ENST00000636355 SLC7A5Q01650 507 aa10.99□□□□□ -0.65
CLN3-248ENST00000636355 KRT17Q04695 432 aa10.99□□□□□ -0.65
CLN3-248ENST00000636355 XRCC4Q13426 336 aa10.99□□□□□ -0.65
CLN3-248ENST00000636355 EIF4EBP2Q13542 120 aaPredicted RBP10.99□□□□□ -0.65
CLN3-248ENST00000636355 MTMR3Q13615 1198 aa10.99□□□□□ -0.65
CLN3-248ENST00000636355 PPP2R5DQ14738 602 aa10.99□□□□□ -0.65
CLN3-248ENST00000636355 PPP1R7Q15435 360 aa10.99□□□□□ -0.65
CLN3-248ENST00000636355 ATP13A4Q4VNC1 1196 aa10.99□□□□□ -0.65
CLN3-248ENST00000636355 KCNT1Q5JUK3 1230 aa10.99□□□□□ -0.65
CLN3-248ENST00000636355 SPOUT1Q5T280 376 aaKnown RBP10.99□□□□□ -0.65
CLN3-248ENST00000636355 SH3PXD2AQ5TCZ1 1133 aa10.99□□□□□ -0.65
CLN3-248ENST00000636355 SCYL2Q6P3W7 929 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms