RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 NAT16Q8N8M0 369 aa19.41■□□□□ 0.7
CLN3-241ENST00000635861 DUSP16Q9BY84 665 aa19.41■□□□□ 0.7
CLN3-241ENST00000635861 UBXN6Q9BZV1 441 aa19.41■□□□□ 0.7
CLN3-241ENST00000635861 TMEM9BQ9NQ34 198 aa19.41■□□□□ 0.7
CLN3-241ENST00000635861 CLIC5Q9NZA1 410 aa19.41■□□□□ 0.7
CLN3-241ENST00000635861 USP3Q9Y6I4 520 aa19.41■□□□□ 0.7
CLN3-241ENST00000635861 ZBTB24O43167 697 aaPredicted RBP19.4■□□□□ 0.7
CLN3-241ENST00000635861 CYP26A1O43174 497 aa19.4■□□□□ 0.7
CLN3-241ENST00000635861 MAP3K13O43283 966 aa19.4■□□□□ 0.7
CLN3-241ENST00000635861 RARGP13631 454 aa19.4■□□□□ 0.7
CLN3-241ENST00000635861 TYRP14679 529 aa19.4■□□□□ 0.7
CLN3-241ENST00000635861 KCNA4P22459 653 aa19.4■□□□□ 0.7
CLN3-241ENST00000635861 PGFP49763 221 aa19.4■□□□□ 0.7
CLN3-241ENST00000635861 MAP7D1Q3KQU3 841 aa19.4■□□□□ 0.7
CLN3-241ENST00000635861 SDE2Q6IQ49 451 aa19.4■□□□□ 0.7
CLN3-241ENST00000635861 SLC36A4Q6YBV0 504 aa19.4■□□□□ 0.7
CLN3-241ENST00000635861 HMGB4Q8WW32 186 aa19.4■□□□□ 0.7
CLN3-241ENST00000635861 WBP2Q969T9 261 aa19.4■□□□□ 0.7
CLN3-241ENST00000635861 BBS2Q9BXC9 721 aa19.4■□□□□ 0.7
CLN3-241ENST00000635861 DNAJC17Q9NVM6 304 aaKnown RBP19.4■□□□□ 0.7
CLN3-241ENST00000635861 OSER1Q9NX31 292 aa19.4■□□□□ 0.7
CLN3-241ENST00000635861 PCNX2A6NKB5 2137 aa19.4■□□□□ 0.7
CLN3-241ENST00000635861 CACNA1EQ15878 2313 aa19.39■□□□□ 0.69
CLN3-241ENST00000635861 ADAMTS9Q9P2N4 1935 aa19.39■□□□□ 0.69
CLN3-241ENST00000635861 C4orf47A7E2U8 309 aa19.39■□□□□ 0.69
CLN3-241ENST00000635861 NEDD8-MDP1E9PL57 170 aa19.39■□□□□ 0.69
CLN3-241ENST00000635861 AP5Z1O43299 807 aa19.39■□□□□ 0.69
CLN3-241ENST00000635861 ZNF202O95125 648 aa19.39■□□□□ 0.69
CLN3-241ENST00000635861 TBX18O95935 607 aa19.39■□□□□ 0.69
CLN3-241ENST00000635861 RALAP11233 206 aa19.39■□□□□ 0.69
CLN3-241ENST00000635861 HOXB2P14652 356 aa19.39■□□□□ 0.69
CLN3-241ENST00000635861 PPP1R26Q5T8A7 1209 aaPredicted RBP19.39■□□□□ 0.69
CLN3-241ENST00000635861 PEAR1Q5VY43 1037 aaPredicted RBP19.39■□□□□ 0.69
CLN3-241ENST00000635861 Q6ZNB5 142 aa19.39■□□□□ 0.69
CLN3-241ENST00000635861 SYT12Q8IV01 421 aa19.39■□□□□ 0.69
CLN3-241ENST00000635861 PGBD3Q8N328 593 aa19.39■□□□□ 0.69
CLN3-241ENST00000635861 FBXL13Q8NEE6 735 aa19.39■□□□□ 0.69
CLN3-241ENST00000635861 NUSAP1Q9BXS6 441 aaKnown RBP19.39■□□□□ 0.69
CLN3-241ENST00000635861 NMUR1Q9HB89 426 aa19.39■□□□□ 0.69
CLN3-241ENST00000635861 MAPK8IP1Q9UQF2 711 aa19.39■□□□□ 0.69
CLN3-241ENST00000635861 A0A1W2PQH9 124 aa19.38■□□□□ 0.69
CLN3-241ENST00000635861 GFRA2O00451 464 aa19.38■□□□□ 0.69
CLN3-241ENST00000635861 CETN3O15182 167 aa19.38■□□□□ 0.69
CLN3-241ENST00000635861 ZNF217O75362 1048 aa19.38■□□□□ 0.69
CLN3-241ENST00000635861 CD58P19256 250 aa19.38■□□□□ 0.69
CLN3-241ENST00000635861 MXI1P50539 228 aa19.38■□□□□ 0.69
CLN3-241ENST00000635861 COG7P83436 770 aa19.38■□□□□ 0.69
CLN3-241ENST00000635861 E2F5Q15329 346 aa19.38■□□□□ 0.69
CLN3-241ENST00000635861 C10orf120Q5SQS8 335 aa19.38■□□□□ 0.69
CLN3-241ENST00000635861 RABEPKQ7Z6M1 372 aa19.38■□□□□ 0.69
CLN3-241ENST00000635861 ARHGAP18Q8N392 663 aa19.38■□□□□ 0.69
CLN3-241ENST00000635861 PIGKQ92643 395 aa19.38■□□□□ 0.69
CLN3-241ENST00000635861 DCLK3Q9C098 648 aa19.38■□□□□ 0.69
CLN3-241ENST00000635861 RMND1Q9NWS8 449 aa19.38■□□□□ 0.69
CLN3-241ENST00000635861 NAGPAQ9UK23 515 aa19.38■□□□□ 0.69
CLN3-241ENST00000635861 CKAP5Q14008 2032 aa19.38■□□□□ 0.69
CLN3-241ENST00000635861 NPC1O15118 1278 aa19.37■□□□□ 0.69
CLN3-241ENST00000635861 EPB41P11171 864 aaKnown RBP19.37■□□□□ 0.69
CLN3-241ENST00000635861 CSRP1P21291 193 aaKnown RBP19.37■□□□□ 0.69
CLN3-241ENST00000635861 CHKAP35790 457 aa19.37■□□□□ 0.69
CLN3-241ENST00000635861 DGKGP49619 791 aa19.37■□□□□ 0.69
CLN3-241ENST00000635861 SLC8A3P57103 927 aa19.37■□□□□ 0.69
CLN3-241ENST00000635861 COBLL1Q53SF7 1204 aa19.37■□□□□ 0.69
CLN3-241ENST00000635861 LYSMD4Q5XG99 296 aa19.37■□□□□ 0.69
CLN3-241ENST00000635861 SLC23A3Q6PIS1 610 aa19.37■□□□□ 0.69
CLN3-241ENST00000635861 CEP76Q8TAP6 659 aa19.37■□□□□ 0.69
CLN3-241ENST00000635861 RLN3Q8WXF3 142 aa19.37■□□□□ 0.69
CLN3-241ENST00000635861 JAKMIP2Q96AA8 810 aa19.37■□□□□ 0.69
CLN3-241ENST00000635861 CHAMP1Q96JM3 812 aa19.37■□□□□ 0.69
CLN3-241ENST00000635861 GABRG3Q99928 467 aa19.37■□□□□ 0.69
CLN3-241ENST00000635861 GTPBP4Q9BZE4 634 aaKnown RBP19.37■□□□□ 0.69
CLN3-241ENST00000635861 MMRN2Q9H8L6 949 aa19.37■□□□□ 0.69
CLN3-241ENST00000635861 RAB20Q9NX57 234 aa19.37■□□□□ 0.69
CLN3-241ENST00000635861 MBD1Q9UIS9 605 aaPredicted RBP19.37■□□□□ 0.69
CLN3-241ENST00000635861 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa19.36■□□□□ 0.69
CLN3-241ENST00000635861 CDX4O14627 284 aaPredicted RBP19.36■□□□□ 0.69
CLN3-241ENST00000635861 STC2O76061 302 aa19.36■□□□□ 0.69
CLN3-241ENST00000635861 CEACAM1P13688 526 aa19.36■□□□□ 0.69
CLN3-241ENST00000635861 GABRG2P18507 467 aa19.36■□□□□ 0.69
CLN3-241ENST00000635861 ZNF132P52740 706 aa19.36■□□□□ 0.69
CLN3-241ENST00000635861 BECN1Q14457 450 aa19.36■□□□□ 0.69
CLN3-241ENST00000635861 ST3GAL2Q16842 350 aa19.36■□□□□ 0.69
CLN3-241ENST00000635861 TRIM61Q5EBN2 209 aa19.36■□□□□ 0.69
CLN3-241ENST00000635861 ARHGAP17Q68EM7 881 aa19.36■□□□□ 0.69
CLN3-241ENST00000635861 PSAPL1Q6NUJ1 521 aa19.36■□□□□ 0.69
CLN3-241ENST00000635861 SCD5Q86SK9 330 aa19.36■□□□□ 0.69
CLN3-241ENST00000635861 TMEFF1Q8IYR6 380 aa19.36■□□□□ 0.69
CLN3-241ENST00000635861 CHPFQ8IZ52 775 aa19.36■□□□□ 0.69
CLN3-241ENST00000635861 TMEM176AQ96HP8 235 aa19.36■□□□□ 0.69
CLN3-241ENST00000635861 HEXIM2Q96MH2 286 aaKnown RBP19.36■□□□□ 0.69
CLN3-241ENST00000635861 CISHQ9NSE2 258 aa19.36■□□□□ 0.69
CLN3-241ENST00000635861 FBXO10Q9UK96 956 aa19.36■□□□□ 0.69
CLN3-241ENST00000635861 HCN2Q9UL51 889 aa19.36■□□□□ 0.69
CLN3-241ENST00000635861 CIZ1Q9ULV3 898 aaPredicted RBP19.36■□□□□ 0.69
CLN3-241ENST00000635861 SLC27A6Q9Y2P4 619 aa19.36■□□□□ 0.69
CLN3-241ENST00000635861 PCDH15Q96QU1 1955 aa19.36■□□□□ 0.69
CLN3-241ENST00000635861 A0A1W2PQF6 199 aa19.35■□□□□ 0.69
CLN3-241ENST00000635861 SLC16A3O15427 465 aaKnown RBP19.35■□□□□ 0.69
CLN3-241ENST00000635861 NOVA1P51513 510 aaKnown RBP19.35■□□□□ 0.69
CLN3-241ENST00000635861 IRX4P78413 519 aa19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms