RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 HTR3DQ70Z44 454 aa21.69■■□□□ 1.06
CLN3-240ENST00000631023 CACNA2D4Q7Z3S7 1137 aa21.69■■□□□ 1.06
CLN3-240ENST00000631023 ZNF677Q86XU0 584 aa21.69■■□□□ 1.06
CLN3-240ENST00000631023 ADGRG2Q8IZP9 1017 aa21.69■■□□□ 1.06
CLN3-240ENST00000631023 WDTC1Q8N5D0 677 aa21.69■■□□□ 1.06
CLN3-240ENST00000631023 TMEM35BQ8NCS4 154 aa21.69■■□□□ 1.06
CLN3-240ENST00000631023 PPP1R13BQ96KQ4 1090 aa21.69■■□□□ 1.06
CLN3-240ENST00000631023 TRIM62Q9BVG3 475 aa21.69■■□□□ 1.06
CLN3-240ENST00000631023 KCNH6Q9H252 994 aa21.69■■□□□ 1.06
CLN3-240ENST00000631023 OTOL1A6NHN0 477 aaPredicted RBP21.68■■□□□ 1.06
CLN3-240ENST00000631023 SHISA7A6NL88 538 aa21.68■■□□□ 1.06
CLN3-240ENST00000631023 E5RJQ4 531 aa21.68■■□□□ 1.06
CLN3-240ENST00000631023 LTFP02788 710 aa21.68■■□□□ 1.06
CLN3-240ENST00000631023 TARSP26639 723 aaKnown RBP21.68■■□□□ 1.06
CLN3-240ENST00000631023 MAGEA9P43362 315 aa21.68■■□□□ 1.06
CLN3-240ENST00000631023 LRSAM1Q6UWE0 723 aa21.68■■□□□ 1.06
CLN3-240ENST00000631023 EDEM1Q92611 657 aa21.68■■□□□ 1.06
CLN3-240ENST00000631023 NAP1L5Q96NT1 182 aaPredicted RBP21.68■■□□□ 1.06
CLN3-240ENST00000631023 TSPY26PQ9H489 355 aa21.68■■□□□ 1.06
CLN3-240ENST00000631023 CYTH4Q9UIA0 394 aa21.68■■□□□ 1.06
CLN3-240ENST00000631023 MTF2Q9Y483 593 aaPredicted RBP21.68■■□□□ 1.06
CLN3-240ENST00000631023 A0A1W2PQC6 194 aa21.67■■□□□ 1.06
CLN3-240ENST00000631023 SCAMP3O14828 347 aaKnown RBP21.67■■□□□ 1.06
CLN3-240ENST00000631023 DCNP07585 359 aaKnown RBP21.67■■□□□ 1.06
CLN3-240ENST00000631023 FANCCQ00597 558 aa21.67■■□□□ 1.06
CLN3-240ENST00000631023 CCDC105Q8IYK2 499 aa21.67■■□□□ 1.06
CLN3-240ENST00000631023 CLEC4CQ8WTT0 213 aa21.67■■□□□ 1.06
CLN3-240ENST00000631023 DCLK3Q9C098 648 aa21.67■■□□□ 1.06
CLN3-240ENST00000631023 SYNCQ9H7C4 482 aa21.67■■□□□ 1.06
CLN3-240ENST00000631023 ZNF510Q9Y2H8 683 aa21.67■■□□□ 1.06
CLN3-240ENST00000631023 ADH1CP00326 375 aa21.66■■□□□ 1.06
CLN3-240ENST00000631023 GJA4P35212 333 aa21.66■■□□□ 1.06
CLN3-240ENST00000631023 NR1I3Q14994 352 aa21.66■■□□□ 1.06
CLN3-240ENST00000631023 FMNL3Q8IVF7 1028 aa21.66■■□□□ 1.06
CLN3-240ENST00000631023 C1orf131Q8NDD1 294 aaKnown RBP21.66■■□□□ 1.06
CLN3-240ENST00000631023 EPS8L1Q8TE68 723 aa21.66■■□□□ 1.06
CLN3-240ENST00000631023 IPO4Q8TEX9 1081 aaKnown RBP21.66■■□□□ 1.06
CLN3-240ENST00000631023 FAM149B1Q96BN6 582 aa21.66■■□□□ 1.06
CLN3-240ENST00000631023 SLC12A8A0AV02 714 aa21.65■■□□□ 1.06
CLN3-240ENST00000631023 PAPSS1O43252 624 aaPredicted RBP21.65■■□□□ 1.06
CLN3-240ENST00000631023 STC2O76061 302 aa21.65■■□□□ 1.06
CLN3-240ENST00000631023 CCDC172P0C7W6 258 aa21.65■■□□□ 1.06
CLN3-240ENST00000631023 UBASH3AP57075 661 aa21.65■■□□□ 1.06
CLN3-240ENST00000631023 PON2Q15165 354 aa21.65■■□□□ 1.06
CLN3-240ENST00000631023 DHCR24Q15392 516 aa21.65■■□□□ 1.06
CLN3-240ENST00000631023 TAF3Q5VWG9 929 aa21.65■■□□□ 1.06
CLN3-240ENST00000631023 TXNDC11Q6PKC3 985 aa21.65■■□□□ 1.06
CLN3-240ENST00000631023 NOP9Q86U38 636 aaKnown RBP21.65■■□□□ 1.06
CLN3-240ENST00000631023 BBS7Q8IWZ6 715 aa21.65■■□□□ 1.06
CLN3-240ENST00000631023 DDX1Q92499 740 aaKnown RBP21.65■■□□□ 1.06
CLN3-240ENST00000631023 CLDN23Q96B33 292 aa21.65■■□□□ 1.06
CLN3-240ENST00000631023 CPXM1Q96SM3 734 aa21.65■■□□□ 1.06
CLN3-240ENST00000631023 MUC6Q6W4X9 2439 aa21.65■■□□□ 1.06
CLN3-240ENST00000631023 LSM8O95777 96 aaKnown RBP21.65■■□□□ 1.06
CLN3-240ENST00000631023 CDH5P33151 784 aaPredicted RBP21.65■■□□□ 1.06
CLN3-240ENST00000631023 RPS9P46781 194 aaKnown RBP21.65■■□□□ 1.06
CLN3-240ENST00000631023 GRSF1Q12849 480 aaKnown RBP eCLIP21.65■■□□□ 1.06
CLN3-240ENST00000631023 LRRC32Q14392 662 aa21.65■■□□□ 1.06
CLN3-240ENST00000631023 MSANTD2Q6P1R3 559 aa21.65■■□□□ 1.06
CLN3-240ENST00000631023 BEND5Q7L4P6 421 aa21.65■■□□□ 1.06
CLN3-240ENST00000631023 DTWD2Q8NBA8 298 aa21.65■■□□□ 1.06
CLN3-240ENST00000631023 MSANTD4Q8NCY6 345 aa21.65■■□□□ 1.06
CLN3-240ENST00000631023 WBP2Q969T9 261 aa21.65■■□□□ 1.06
CLN3-240ENST00000631023 PLD4Q96BZ4 506 aa21.65■■□□□ 1.06
CLN3-240ENST00000631023 LMAN1LQ9HAT1 526 aa21.65■■□□□ 1.06
CLN3-240ENST00000631023 DLGAP2Q9P1A6 1054 aa21.65■■□□□ 1.06
CLN3-240ENST00000631023 MYO6Q9UM54 1294 aa21.65■■□□□ 1.06
CLN3-240ENST00000631023 HBS1LQ9Y450 684 aaKnown RBP21.65■■□□□ 1.06
CLN3-240ENST00000631023 MYO18AQ92614 2054 aaKnown RBP21.64■■□□□ 1.06
CLN3-240ENST00000631023 WDFY4Q6ZS81 3184 aa21.64■■□□□ 1.05
CLN3-240ENST00000631023 TRDMT1O14717 391 aaKnown RBP21.64■■□□□ 1.05
CLN3-240ENST00000631023 CAPN9O14815 690 aa21.64■■□□□ 1.05
CLN3-240ENST00000631023 CYP17A1P05093 508 aa21.64■■□□□ 1.05
CLN3-240ENST00000631023 HMBSP08397 361 aa21.64■■□□□ 1.05
CLN3-240ENST00000631023 MMEP08473 750 aa21.64■■□□□ 1.05
CLN3-240ENST00000631023 NCAM1P13591 858 aa21.64■■□□□ 1.05
CLN3-240ENST00000631023 YWHAZP63104 245 aaKnown RBP21.64■■□□□ 1.05
CLN3-240ENST00000631023 CDR2Q01850 454 aa21.64■■□□□ 1.05
CLN3-240ENST00000631023 DGKKQ5KSL6 1271 aa21.64■■□□□ 1.05
CLN3-240ENST00000631023 RHBDF2Q6PJF5 856 aa21.64■■□□□ 1.05
CLN3-240ENST00000631023 ZNF687Q8N1G0 1237 aa21.64■■□□□ 1.05
CLN3-240ENST00000631023 P2RY13Q9BPV8 354 aa21.64■■□□□ 1.05
CLN3-240ENST00000631023 SFMBT1Q9UHJ3 866 aa21.64■■□□□ 1.05
CLN3-240ENST00000631023 NOCTQ9UK39 431 aaKnown RBP21.64■■□□□ 1.05
CLN3-240ENST00000631023 CACNA1HO95180 2353 aa21.63■■□□□ 1.05
CLN3-240ENST00000631023 GALR2O43603 387 aaPredicted RBP21.63■■□□□ 1.05
CLN3-240ENST00000631023 GREM1O60565 184 aa21.63■■□□□ 1.05
CLN3-240ENST00000631023 GLI1P08151 1106 aa21.63■■□□□ 1.05
CLN3-240ENST00000631023 ADH5P11766 374 aa21.63■■□□□ 1.05
CLN3-240ENST00000631023 HARS2P49590 506 aaKnown RBP21.63■■□□□ 1.05
CLN3-240ENST00000631023 GAD2Q05329 585 aa21.63■■□□□ 1.05
CLN3-240ENST00000631023 FZD5Q13467 585 aa21.63■■□□□ 1.05
CLN3-240ENST00000631023 EFHC1Q5JVL4 640 aa21.63■■□□□ 1.05
CLN3-240ENST00000631023 ZDHHC17Q8IUH5 632 aa21.63■■□□□ 1.05
CLN3-240ENST00000631023 POPDC2Q9HBU9 364 aa21.63■■□□□ 1.05
CLN3-240ENST00000631023 SPHK2Q9NRA0 654 aa21.63■■□□□ 1.05
CLN3-240ENST00000631023 ARIH1Q9Y4X5 557 aaPredicted RBP21.63■■□□□ 1.05
CLN3-240ENST00000631023 CHRNB1P11230 501 aa21.62■■□□□ 1.05
CLN3-240ENST00000631023 FERP16591 822 aa21.62■■□□□ 1.05
CLN3-240ENST00000631023 CORO1AP31146 461 aaKnown RBP21.62■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms