RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 IFRD2Q12894 506 aaPredicted RBP13.31□□□□□ -0.28
PNKP-217ENST00000625216 TSSK4Q6SA08 328 aa13.31□□□□□ -0.28
PNKP-217ENST00000625216 TMTC1Q8IUR5 882 aa13.31□□□□□ -0.28
PNKP-217ENST00000625216 ADGRG2Q8IZP9 1017 aa13.31□□□□□ -0.28
PNKP-217ENST00000625216 SUMF1Q8NBK3 374 aa13.31□□□□□ -0.28
PNKP-217ENST00000625216 TTC16Q8NEE8 873 aa13.31□□□□□ -0.28
PNKP-217ENST00000625216 ZMIZ2Q8NF64 920 aa13.31□□□□□ -0.28
PNKP-217ENST00000625216 SCAMP5Q8TAC9 235 aa13.31□□□□□ -0.28
PNKP-217ENST00000625216 OLIG1Q8TAK6 271 aa13.31□□□□□ -0.28
PNKP-217ENST00000625216 WHAMMQ8TF30 809 aa13.31□□□□□ -0.28
PNKP-217ENST00000625216 SHC3Q92529 594 aa13.31□□□□□ -0.28
PNKP-217ENST00000625216 RUBCNQ92622 972 aa13.31□□□□□ -0.28
PNKP-217ENST00000625216 ARID3AQ99856 593 aa13.31□□□□□ -0.28
PNKP-217ENST00000625216 P2RY13Q9BPV8 354 aa13.31□□□□□ -0.28
PNKP-217ENST00000625216 NUCKS1Q9H1E3 243 aaKnown RBP13.31□□□□□ -0.28
PNKP-217ENST00000625216 EPC1Q9H2F5 836 aa13.31□□□□□ -0.28
PNKP-217ENST00000625216 LINC00597Q9H2U6 94 aa13.31□□□□□ -0.28
PNKP-217ENST00000625216 FAM49BQ9NUQ9 324 aa13.31□□□□□ -0.28
PNKP-217ENST00000625216 AIPL1Q9NZN9 384 aa13.31□□□□□ -0.28
PNKP-217ENST00000625216 TBC1D14Q9P2M4 693 aa13.31□□□□□ -0.28
PNKP-217ENST00000625216 HMGXB4Q9UGU5 601 aa13.31□□□□□ -0.28
PNKP-217ENST00000625216 CPQQ9Y646 472 aa13.31□□□□□ -0.28
PNKP-217ENST00000625216 MIA3Q5JRA6 1907 aa13.31□□□□□ -0.28
PNKP-217ENST00000625216 ESPNB1AK53 854 aa13.3□□□□□ -0.28
PNKP-217ENST00000625216 CHURC1-FNTBB4DL54 471 aa13.3□□□□□ -0.28
PNKP-217ENST00000625216 FOXN3O00409 490 aaPredicted RBP13.3□□□□□ -0.28
PNKP-217ENST00000625216 GFPT2O94808 682 aa13.3□□□□□ -0.28
PNKP-217ENST00000625216 MBL2P11226 248 aaPredicted RBP13.3□□□□□ -0.28
PNKP-217ENST00000625216 CD58P19256 250 aa13.3□□□□□ -0.28
PNKP-217ENST00000625216 CNR2P34972 360 aa13.3□□□□□ -0.28
PNKP-217ENST00000625216 PRKCIP41743 596 aa13.3□□□□□ -0.28
PNKP-217ENST00000625216 STAT1P42224 750 aa13.3□□□□□ -0.28
PNKP-217ENST00000625216 ZXDBP98169 803 aa13.3□□□□□ -0.28
PNKP-217ENST00000625216 ORC1Q13415 861 aa13.3□□□□□ -0.28
PNKP-217ENST00000625216 TSR1Q2NL82 804 aaKnown RBP13.3□□□□□ -0.28
PNKP-217ENST00000625216 FSTL4Q6MZW2 842 aa13.3□□□□□ -0.28
PNKP-217ENST00000625216 Q6ZS52 159 aa13.3□□□□□ -0.28
PNKP-217ENST00000625216 TOGARAM2Q6ZUX3 1019 aa13.3□□□□□ -0.28
PNKP-217ENST00000625216 IRF2BP2Q7Z5L9 587 aa13.3□□□□□ -0.28
PNKP-217ENST00000625216 UBR7Q8N806 425 aa13.3□□□□□ -0.28
PNKP-217ENST00000625216 CD101Q93033 1021 aa13.3□□□□□ -0.28
PNKP-217ENST00000625216 SECISBP2LQ93073 1101 aaKnown RBP13.3□□□□□ -0.28
PNKP-217ENST00000625216 OTUB2Q96DC9 234 aa13.3□□□□□ -0.28
PNKP-217ENST00000625216 CHFRQ96EP1 664 aa13.3□□□□□ -0.28
PNKP-217ENST00000625216 TWNKQ96RR1 684 aa13.3□□□□□ -0.28
PNKP-217ENST00000625216 DESI2Q9BSY9 194 aa13.3□□□□□ -0.28
PNKP-217ENST00000625216 TLR8Q9NR97 1041 aaKnown RBP13.3□□□□□ -0.28
PNKP-217ENST00000625216 ZNHIT6Q9NWK9 470 aaKnown RBP13.3□□□□□ -0.28
PNKP-217ENST00000625216 TICRRQ7Z2Z1 1910 aa13.29□□□□□ -0.28
PNKP-217ENST00000625216 EP300Q09472 2414 aaPredicted RBP13.29□□□□□ -0.28
PNKP-217ENST00000625216 E2F8A0AVK6 867 aa13.29□□□□□ -0.28
PNKP-217ENST00000625216 USP27XA6NNY8 438 aa13.29□□□□□ -0.28
PNKP-217ENST00000625216 K7ESF4 209 aa13.29□□□□□ -0.28
PNKP-217ENST00000625216 COCHO43405 550 aa13.29□□□□□ -0.28
PNKP-217ENST00000625216 BEST1O76090 585 aa13.29□□□□□ -0.28
PNKP-217ENST00000625216 SERPING1P05155 500 aa13.29□□□□□ -0.28
PNKP-217ENST00000625216 ADORA2BP29275 332 aa13.29□□□□□ -0.28
PNKP-217ENST00000625216 EIF4A3P38919 411 aaKnown RBP13.29□□□□□ -0.28
PNKP-217ENST00000625216 MFAP3P55082 362 aa13.29□□□□□ -0.28
PNKP-217ENST00000625216 ARID5AQ03989 594 aa13.29□□□□□ -0.28
PNKP-217ENST00000625216 MAPK8IP2Q13387 824 aaPredicted RBP13.29□□□□□ -0.28
PNKP-217ENST00000625216 CUL2Q13617 745 aa13.29□□□□□ -0.28
PNKP-217ENST00000625216 TDRD12Q587J7 1177 aaKnown RBP13.29□□□□□ -0.28
PNKP-217ENST00000625216 CLEC20AQ6ZU45 233 aa13.29□□□□□ -0.28
PNKP-217ENST00000625216 LONP2Q86WA8 852 aa13.29□□□□□ -0.28
PNKP-217ENST00000625216 GPR161Q8N6U8 529 aaKnown RBP13.29□□□□□ -0.28
PNKP-217ENST00000625216 ACRBPQ8NEB7 543 aa13.29□□□□□ -0.28
PNKP-217ENST00000625216 TMEM176AQ96HP8 235 aa13.29□□□□□ -0.28
PNKP-217ENST00000625216 HEXIM2Q96MH2 286 aaKnown RBP13.29□□□□□ -0.28
PNKP-217ENST00000625216 DUSP16Q9BY84 665 aa13.29□□□□□ -0.28
PNKP-217ENST00000625216 UBXN6Q9BZV1 441 aa13.29□□□□□ -0.28
PNKP-217ENST00000625216 NHEJ1Q9H9Q4 299 aaPredicted RBP13.29□□□□□ -0.28
PNKP-217ENST00000625216 CISHQ9NSE2 258 aa13.29□□□□□ -0.28
PNKP-217ENST00000625216 SMPD4Q9NXE4 827 aa13.29□□□□□ -0.28
PNKP-217ENST00000625216 GMIPQ9P107 970 aa13.29□□□□□ -0.28
PNKP-217ENST00000625216 CFAP97Q9P2B7 532 aa13.29□□□□□ -0.28
PNKP-217ENST00000625216 SCML2Q9UQR0 700 aa13.29□□□□□ -0.28
PNKP-217ENST00000625216 GVINP1Q7Z2Y8 2422 aa13.29□□□□□ -0.28
PNKP-217ENST00000625216 CFAP54Q96N23 3096 aa13.28□□□□□ -0.28
PNKP-217ENST00000625216 CCDC163A0A0D9SF12 145 aa13.28□□□□□ -0.28
PNKP-217ENST00000625216 SSU72P8A0A1W2PR75 194 aa13.28□□□□□ -0.28
PNKP-217ENST00000625216 HHLA1C9JL84 531 aa13.28□□□□□ -0.28
PNKP-217ENST00000625216 TLR5O60602 858 aa13.28□□□□□ -0.28
PNKP-217ENST00000625216 FERP16591 822 aa13.28□□□□□ -0.28
PNKP-217ENST00000625216 ACO1P21399 889 aaKnown RBP13.28□□□□□ -0.28
PNKP-217ENST00000625216 PSEN1P49768 467 aa13.28□□□□□ -0.28
PNKP-217ENST00000625216 YWHAEP62258 255 aaKnown RBP13.28□□□□□ -0.28
PNKP-217ENST00000625216 KLHL30Q0D2K2 578 aa13.28□□□□□ -0.28
PNKP-217ENST00000625216 ASTE1Q2TB18 679 aaPredicted RBP13.28□□□□□ -0.28
PNKP-217ENST00000625216 ENOSF1Q7L5Y1 443 aa13.28□□□□□ -0.28
PNKP-217ENST00000625216 FAM71AQ8IYT1 594 aa13.28□□□□□ -0.28
PNKP-217ENST00000625216 SYT11Q9BT88 431 aa13.28□□□□□ -0.28
PNKP-217ENST00000625216 NACA2Q9H009 215 aa13.28□□□□□ -0.28
PNKP-217ENST00000625216 HAUS4Q9H6D7 363 aa13.28□□□□□ -0.28
PNKP-217ENST00000625216 FBRSL1Q9HCM7 1045 aaKnown RBP13.28□□□□□ -0.28
PNKP-217ENST00000625216 SPTLC3Q9NUV7 552 aa13.28□□□□□ -0.28
PNKP-217ENST00000625216 RAB23Q9ULC3 237 aa13.28□□□□□ -0.28
PNKP-217ENST00000625216 REXO2Q9Y3B8 237 aaKnown RBP13.28□□□□□ -0.28
PNKP-217ENST00000625216 RNF40O75150 1001 aa13.27□□□□□ -0.29
PNKP-217ENST00000625216 NDUFA10O95299 355 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms