RNA–Protein interactions for RNA: ENST00000618902.1

SHMT1-211, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 5 BASIC

Gene SHMT1, Length 378 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-211ENST00000618902 KHSRPQ92945 711 aaKnown RBP eCLIP5.52□□□□□ -1.53
SHMT1-211ENST00000618902 OTUB2Q96DC9 234 aa5.52□□□□□ -1.53
SHMT1-211ENST00000618902 FAM122AQ96E09 287 aa5.52□□□□□ -1.53
SHMT1-211ENST00000618902 SMARCD1Q96GM5 515 aa5.52□□□□□ -1.53
SHMT1-211ENST00000618902 PCDHB18PQ96TA0 734 aa5.52□□□□□ -1.53
SHMT1-211ENST00000618902 SYT11Q9BT88 431 aa5.52□□□□□ -1.53
SHMT1-211ENST00000618902 DDX23Q9BUQ8 820 aaKnown RBP5.52□□□□□ -1.53
SHMT1-211ENST00000618902 TRMT61BQ9BVS5 477 aaKnown RBP5.52□□□□□ -1.53
SHMT1-211ENST00000618902 SLC46A2Q9BY10 475 aa5.52□□□□□ -1.53
SHMT1-211ENST00000618902 DUSP16Q9BY84 665 aa5.52□□□□□ -1.53
SHMT1-211ENST00000618902 STK33Q9BYT3 514 aa5.52□□□□□ -1.53
SHMT1-211ENST00000618902 PLA2G2FQ9BZM2 168 aa5.52□□□□□ -1.53
SHMT1-211ENST00000618902 SMOC2Q9H3U7 446 aa5.52□□□□□ -1.53
SHMT1-211ENST00000618902 FBXO44Q9H4M3 255 aa5.52□□□□□ -1.53
SHMT1-211ENST00000618902 VIPAS39Q9H9C1 493 aa5.52□□□□□ -1.53
SHMT1-211ENST00000618902 NMUR1Q9HB89 426 aa5.52□□□□□ -1.53
SHMT1-211ENST00000618902 DMAP1Q9NPF5 467 aaPredicted RBP5.52□□□□□ -1.53
SHMT1-211ENST00000618902 OSER1Q9NX31 292 aa5.52□□□□□ -1.53
SHMT1-211ENST00000618902 CWC15Q9P013 229 aaKnown RBP5.52□□□□□ -1.53
SHMT1-211ENST00000618902 GMIPQ9P107 970 aa5.52□□□□□ -1.53
SHMT1-211ENST00000618902 RNF14Q9UBS8 474 aa5.52□□□□□ -1.53
SHMT1-211ENST00000618902 NOCTQ9UK39 431 aaKnown RBP5.52□□□□□ -1.53
SHMT1-211ENST00000618902 TSPAN16Q9UKR8 245 aa5.52□□□□□ -1.53
SHMT1-211ENST00000618902 MAGED2Q9UNF1 606 aaPredicted RBP5.52□□□□□ -1.53
SHMT1-211ENST00000618902 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.52□□□□□ -1.53
SHMT1-211ENST00000618902 ADGRG1Q9Y653 693 aa5.52□□□□□ -1.53
SHMT1-211ENST00000618902 NUMBLQ9Y6R0 609 aa5.52□□□□□ -1.53
SHMT1-211ENST00000618902 PATJQ8NI35 1801 aa5.52□□□□□ -1.53
SHMT1-211ENST00000618902 OTOGLQ3ZCN5 2332 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 A0A1W2PQJ5 194 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 KANSL1LA0AUZ9 987 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 CTAGE15A4D2H0 777 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 C2orf78A6NCI8 922 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 PROB1E7EW31 1015 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 PIK3R2O00459 728 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 SLC9A3R1O14745 358 aaPredicted RBP5.51□□□□□ -1.53
SHMT1-211ENST00000618902 ZNF263O14978 683 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 THAP12O43422 761 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 GALR2O43603 387 aaPredicted RBP5.51□□□□□ -1.53
SHMT1-211ENST00000618902 KRT86O43790 486 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 FOXD2O60548 495 aaPredicted RBP5.51□□□□□ -1.53
SHMT1-211ENST00000618902 MFAP3LO75121 409 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 GFPT2O94808 682 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 PAPSS2O95340 614 aaPredicted RBP5.51□□□□□ -1.53
SHMT1-211ENST00000618902 PRAMEF12O95522 483 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 CTAGE8P0CG41 777 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 CYP11B1P15538 503 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 GABRR2P28476 465 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 GNA15P30679 374 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 HOXA6P31267 233 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 CYLC1P35663 651 aaPredicted RBP5.51□□□□□ -1.53
SHMT1-211ENST00000618902 SOX5P35711 763 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 USP8P40818 1118 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 VIPR2P41587 438 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 GPD2P43304 727 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 RPL34P49207 117 aaKnown RBP5.51□□□□□ -1.53
SHMT1-211ENST00000618902 SLC5A3P53794 718 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 ZXDBP98169 803 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 FMO1Q01740 532 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 CKAP4Q07065 602 aaKnown RBP5.51□□□□□ -1.53
SHMT1-211ENST00000618902 TAF10Q12962 218 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 NR1H3Q13133 447 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 MTA1Q13330 715 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 PDGFRLQ15198 375 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 ELF2Q15723 593 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 FBXO43Q4G163 708 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 SLC44A4Q53GD3 710 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 RAB41Q5JT25 222 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 FAM78AQ5JUQ0 283 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 DGKKQ5KSL6 1271 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 FKBP15Q5T1M5 1219 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 IER5LQ5T953 404 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 TXNDC8Q6A555 127 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 TANGO2Q6ICL3 276 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 WDR93Q6P2C0 686 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 KLHDC10Q6PID8 442 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 DENND5BQ6ZUT9 1274 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 NUDT18Q6ZVK8 323 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 IRF2BP2Q7Z5L9 587 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 CTAGE6Q86UF2 777 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 PASD1Q8IV76 773 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 CTAGE4Q8IX94 777 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 YAF2Q8IY57 180 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 CMTM8Q8IZV2 173 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 NUP93Q8N1F7 819 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 GOLGA6L1Q8N7Z2 621 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 MSANTD4Q8NCY6 345 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 NEK11Q8NG66 645 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 EPS8L1Q8TE68 723 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 CLEC4CQ8WTT0 213 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 SLC35F5Q8WV83 523 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP5.51□□□□□ -1.53
SHMT1-211ENST00000618902 SECISBP2LQ93073 1101 aaKnown RBP5.51□□□□□ -1.53
SHMT1-211ENST00000618902 WBP2Q969T9 261 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 CLDN23Q96B33 292 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 MCRS1Q96EZ8 462 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 PIWIL1Q96J94 861 aaKnown RBP5.51□□□□□ -1.53
SHMT1-211ENST00000618902 SLITRK1Q96PX8 696 aa5.51□□□□□ -1.53
SHMT1-211ENST00000618902 NAPGQ99747 312 aaPredicted RBP5.51□□□□□ -1.53
SHMT1-211ENST00000618902 IRX2Q9BZI1 471 aaPredicted RBP5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms