RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 ALDH1A1P00352 501 aa14.43□□□□□ -0.1
CPSF1-212ENST00000616140 TPH1P17752 444 aa14.43□□□□□ -0.1
CPSF1-212ENST00000616140 GP5P40197 560 aa14.43□□□□□ -0.1
CPSF1-212ENST00000616140 THPOP40225 353 aa14.43□□□□□ -0.1
CPSF1-212ENST00000616140 FUT2Q10981 343 aa14.43□□□□□ -0.1
CPSF1-212ENST00000616140 GTF2H3Q13889 308 aa14.43□□□□□ -0.1
CPSF1-212ENST00000616140 ADCK1Q86TW2 530 aa14.43□□□□□ -0.1
CPSF1-212ENST00000616140 ATP6V0D2Q8N8Y2 350 aa14.43□□□□□ -0.1
CPSF1-212ENST00000616140 SLC16A10Q8TF71 515 aa14.43□□□□□ -0.1
CPSF1-212ENST00000616140 TCF7L2Q9NQB0 619 aa14.43□□□□□ -0.1
CPSF1-212ENST00000616140 TIMM13Q9Y5L4 95 aaPredicted RBP14.43□□□□□ -0.1
CPSF1-212ENST00000616140 C5orf58C9J3I9 102 aa14.42□□□□□ -0.1
CPSF1-212ENST00000616140 ACKR2O00590 384 aa14.42□□□□□ -0.1
CPSF1-212ENST00000616140 AMPD1P23109 780 aa14.42□□□□□ -0.1
CPSF1-212ENST00000616140 DSG3P32926 999 aa14.42□□□□□ -0.1
CPSF1-212ENST00000616140 CLK1P49759 484 aaKnown RBP14.42□□□□□ -0.1
CPSF1-212ENST00000616140 DDX39BQ13838 428 aaKnown RBP14.42□□□□□ -0.1
CPSF1-212ENST00000616140 ERMARDQ5T6L9 678 aa14.42□□□□□ -0.1
CPSF1-212ENST00000616140 TTC30AQ86WT1 665 aa14.42□□□□□ -0.1
CPSF1-212ENST00000616140 PLD3Q8IV08 490 aa14.42□□□□□ -0.1
CPSF1-212ENST00000616140 CERKQ8TCT0 537 aa14.42□□□□□ -0.1
CPSF1-212ENST00000616140 EDEM1Q92611 657 aa14.42□□□□□ -0.1
CPSF1-212ENST00000616140 FAR2Q96K12 515 aa14.42□□□□□ -0.1
CPSF1-212ENST00000616140 RBBP8Q99708 897 aa14.42□□□□□ -0.1
CPSF1-212ENST00000616140 EXOSC4Q9NPD3 245 aaKnown RBP14.42□□□□□ -0.1
CPSF1-212ENST00000616140 SNTG2Q9NY99 539 aa14.42□□□□□ -0.1
CPSF1-212ENST00000616140 RIC1Q4ADV7 1423 aa14.42□□□□□ -0.1
CPSF1-212ENST00000616140 C17orf102A2RUQ5 167 aa14.42□□□□□ -0.1
CPSF1-212ENST00000616140 NCF1BA6NI72 391 aaPredicted RBP14.42□□□□□ -0.1
CPSF1-212ENST00000616140 NCF1CA8MVU1 366 aaPredicted RBP14.42□□□□□ -0.1
CPSF1-212ENST00000616140 NCF1P14598 390 aaPredicted RBP14.42□□□□□ -0.1
CPSF1-212ENST00000616140 EIF4BP23588 611 aaKnown RBP14.42□□□□□ -0.1
CPSF1-212ENST00000616140 ACAT1P24752 427 aaKnown RBP14.42□□□□□ -0.1
CPSF1-212ENST00000616140 HASPINQ8TF76 798 aa14.42□□□□□ -0.1
CPSF1-212ENST00000616140 NR1H4Q96RI1 486 aaPredicted RBP14.42□□□□□ -0.1
CPSF1-212ENST00000616140 CINPQ9BW66 212 aaPredicted RBP14.42□□□□□ -0.1
CPSF1-212ENST00000616140 RBM22Q9NW64 420 aaKnown RBP eCLIP14.42□□□□□ -0.16e-8■■■■■ 31.6
CPSF1-212ENST00000616140 VPS9D1Q9Y2B5 631 aa14.42□□□□□ -0.1
CPSF1-212ENST00000616140 SNX3O60493 162 aa14.42□□□□□ -0.1
CPSF1-212ENST00000616140 ZNF23P17027 643 aa14.42□□□□□ -0.1
CPSF1-212ENST00000616140 ALDH5A1P51649 535 aaPredicted RBP14.42□□□□□ -0.1
CPSF1-212ENST00000616140 NEK2P51955 445 aa14.42□□□□□ -0.1
CPSF1-212ENST00000616140 PDPK2PQ6A1A2 396 aa14.42□□□□□ -0.1
CPSF1-212ENST00000616140 KCNT2Q6UVM3 1135 aa14.42□□□□□ -0.1
CPSF1-212ENST00000616140 CES3Q6UWW8 571 aa14.42□□□□□ -0.1
CPSF1-212ENST00000616140 ZCCHC23Q6ZST2 131 aa14.42□□□□□ -0.1
CPSF1-212ENST00000616140 ZCCHC9Q8N567 271 aaKnown RBP14.42□□□□□ -0.1
CPSF1-212ENST00000616140 SNX31Q8N9S9 440 aa14.42□□□□□ -0.1
CPSF1-212ENST00000616140 FICDQ9BVA6 458 aa14.42□□□□□ -0.1
CPSF1-212ENST00000616140 ASB7Q9H672 318 aa14.42□□□□□ -0.1
CPSF1-212ENST00000616140 TRIM45Q9H8W5 580 aaPredicted RBP14.42□□□□□ -0.1
CPSF1-212ENST00000616140 A1CFQ9NQ94 594 aaKnown RBP14.42□□□□□ -0.1
CPSF1-212ENST00000616140 SETD4Q9NVD3 440 aa14.42□□□□□ -0.1
CPSF1-212ENST00000616140 MROH1Q8NDA8 1641 aa14.42□□□□□ -0.1
CPSF1-212ENST00000616140 GAKO14976 1311 aa14.42□□□□□ -0.1
CPSF1-212ENST00000616140 SPDYE5A6NIY4 337 aa14.41□□□□□ -0.1
CPSF1-212ENST00000616140 APOC4-APOC2K7ER74 178 aa14.41□□□□□ -0.1
CPSF1-212ENST00000616140 FKBP6O75344 327 aa14.41□□□□□ -0.1
CPSF1-212ENST00000616140 APOC2P02655 101 aa14.41□□□□□ -0.1
CPSF1-212ENST00000616140 THP07101 528 aa14.41□□□□□ -0.1
CPSF1-212ENST00000616140 HSPA13P48723 471 aa14.41□□□□□ -0.1
CPSF1-212ENST00000616140 YWHAZP63104 245 aaKnown RBP14.41□□□□□ -0.1
CPSF1-212ENST00000616140 AUHQ13825 339 aaKnown RBP14.41□□□□□ -0.1
CPSF1-212ENST00000616140 SPDYE7PQ495Y7 208 aa14.41□□□□□ -0.1
CPSF1-212ENST00000616140 ATP13A4Q4VNC1 1196 aa14.41□□□□□ -0.1
CPSF1-212ENST00000616140 AGKQ53H12 422 aa14.41□□□□□ -0.1
CPSF1-212ENST00000616140 PATL1Q86TB9 770 aaKnown RBP14.41□□□□□ -0.1
CPSF1-212ENST00000616140 TMEM139Q8IV31 216 aa14.41□□□□□ -0.1
CPSF1-212ENST00000616140 OTUB1Q96FW1 271 aaPredicted RBP14.41□□□□□ -0.1
CPSF1-212ENST00000616140 APOPT1Q96IL0 206 aa14.41□□□□□ -0.1
CPSF1-212ENST00000616140 ZNF333Q96JL9 665 aa14.41□□□□□ -0.1
CPSF1-212ENST00000616140 GLT1D1Q96MS3 346 aa14.41□□□□□ -0.1
CPSF1-212ENST00000616140 WWOXQ9NZC7 414 aa14.41□□□□□ -0.1
CPSF1-212ENST00000616140 RNF112Q9ULX5 631 aa14.41□□□□□ -0.1
CPSF1-212ENST00000616140 TMEM131LA2VDJ0 1609 aa14.41□□□□□ -0.1
CPSF1-212ENST00000616140 HEATR9A2RTY3 570 aa14.41□□□□□ -0.1
CPSF1-212ENST00000616140 ZNF286BP0CG31 522 aa14.41□□□□□ -0.1
CPSF1-212ENST00000616140 ITGB3BPQ13352 177 aaPredicted RBP14.41□□□□□ -0.1
CPSF1-212ENST00000616140 KATNAL2Q8IYT4 538 aa14.41□□□□□ -0.1
CPSF1-212ENST00000616140 RNF148Q8N7C7 305 aa14.41□□□□□ -0.1
CPSF1-212ENST00000616140 VPS37AQ8NEZ2 397 aa14.41□□□□□ -0.1
CPSF1-212ENST00000616140 HTR3CQ8WXA8 447 aa14.41□□□□□ -0.1
CPSF1-212ENST00000616140 MKL1Q969V6 931 aa14.41□□□□□ -0.1
CPSF1-212ENST00000616140 UTP6Q9NYH9 597 aaKnown RBP14.41□□□□□ -0.1
CPSF1-212ENST00000616140 MST1RQ04912 1400 aa14.41□□□□□ -0.1
CPSF1-212ENST00000616140 C2orf81A6NN90 581 aa14.41□□□□□ -0.1
CPSF1-212ENST00000616140 C2CD2LO14523 706 aa14.41□□□□□ -0.1
CPSF1-212ENST00000616140 KDM1AO60341 852 aa14.41□□□□□ -0.1
CPSF1-212ENST00000616140 DAB1O75553 588 aa14.41□□□□□ -0.1
CPSF1-212ENST00000616140 ENDOD1O94919 500 aa14.41□□□□□ -0.1
CPSF1-212ENST00000616140 PSMC3P17980 439 aa14.41□□□□□ -0.1
CPSF1-212ENST00000616140 PBX1P40424 430 aa14.41□□□□□ -0.1
CPSF1-212ENST00000616140 PPP3CCP48454 512 aa14.41□□□□□ -0.1
CPSF1-212ENST00000616140 TBL3Q12788 808 aaKnown RBP14.41□□□□□ -0.1
CPSF1-212ENST00000616140 CCDC60Q8IWA6 550 aaPredicted RBP14.41□□□□□ -0.1
CPSF1-212ENST00000616140 ZNF556Q9HAH1 456 aa14.41□□□□□ -0.1
CPSF1-212ENST00000616140 KCNH4Q9UQ05 1017 aa14.41□□□□□ -0.1
CPSF1-212ENST00000616140 E5RJQ4 531 aa14.41□□□□□ -0.1
CPSF1-212ENST00000616140 SLCO1B7G3V0H7 640 aa14.41□□□□□ -0.1
CPSF1-212ENST00000616140 SERPINE1P05121 402 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms