RNA–Protein interactions for RNA: ENST00000616010.4

CCND3-223, Transcript of cyclin D3, human

TSL 5 BASIC

Gene CCND3, Length 2,047 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCND3-223	ENST00000616010	FAM204A	Q9H8W3	233 aa		24.45	■■□□□ 1.5
CCND3-223	ENST00000616010	DDX56	Q9NY93	547 aa	Known RBP	24.45	■■□□□ 1.5
CCND3-223	ENST00000616010	RRN3	Q9NYV6	651 aa		24.45	■■□□□ 1.5
CCND3-223	ENST00000616010	FBXW11	Q9UKB1	542 aa		24.45	■■□□□ 1.5
CCND3-223	ENST00000616010	GLUD1	P00367	558 aa		24.44	■■□□□ 1.5
CCND3-223	ENST00000616010	FGG	P02679	453 aa		24.44	■■□□□ 1.5
CCND3-223	ENST00000616010	ODF2	Q5BJF6	829 aa		24.44	■■□□□ 1.5
CCND3-223	ENST00000616010	FAM131B	Q86XD5	332 aa		24.44	■■□□□ 1.5
CCND3-223	ENST00000616010	TDH	Q8IZJ6	230 aa		24.44	■■□□□ 1.5
CCND3-223	ENST00000616010	EXD1	Q8NHP7	514 aa		24.44	■■□□□ 1.5
CCND3-223	ENST00000616010	DQX1	Q8TE96	717 aa	Known RBP	24.44	■■□□□ 1.5
CCND3-223	ENST00000616010	SLITRK1	Q96PX8	696 aa		24.44	■■□□□ 1.5
CCND3-223	ENST00000616010	PI4K2B	G5E9Z4	385 aa		24.44	■■□□□ 1.5
CCND3-223	ENST00000616010	ZRANB2	O95218	330 aa	Known RBP eCLIP	24.44	■■□□□ 1.5
CCND3-223	ENST00000616010	CSH1	P0DML2	217 aa		24.44	■■□□□ 1.5
CCND3-223	ENST00000616010	CSH2	P0DML3	217 aa		24.44	■■□□□ 1.5
CCND3-223	ENST00000616010	RARA	P10276	462 aa		24.44	■■□□□ 1.5
CCND3-223	ENST00000616010	DEUP1	Q05D60	604 aa		24.44	■■□□□ 1.5
CCND3-223	ENST00000616010	LLGL1	Q15334	1064 aa		24.44	■■□□□ 1.5
CCND3-223	ENST00000616010	LILRA6	Q6PI73	481 aa		24.44	■■□□□ 1.5
CCND3-223	ENST00000616010	TAC4	Q86UU9	113 aa		24.44	■■□□□ 1.5
CCND3-223	ENST00000616010	RNF25	Q96BH1	459 aa	Predicted RBP	24.44	■■□□□ 1.5
CCND3-223	ENST00000616010	TLR8	Q9NR97	1041 aa	Known RBP	24.44	■■□□□ 1.5
CCND3-223	ENST00000616010	PIGV	Q9NUD9	493 aa		24.44	■■□□□ 1.5
CCND3-223	ENST00000616010	DDIT4	Q9NX09	232 aa		24.44	■■□□□ 1.5
CCND3-223	ENST00000616010	MYO7A	Q13402	2215 aa		24.43	■■□□□ 1.5
CCND3-223	ENST00000616010	LRRD1	A4D1F6	860 aa		24.43	■■□□□ 1.5
CCND3-223	ENST00000616010	CTAGE15	A4D2H0	777 aa		24.43	■■□□□ 1.5
CCND3-223	ENST00000616010	CTAGE8	P0CG41	777 aa		24.43	■■□□□ 1.5
CCND3-223	ENST00000616010	TAF12	Q16514	161 aa		24.43	■■□□□ 1.5
CCND3-223	ENST00000616010	CTAGE6	Q86UF2	777 aa		24.43	■■□□□ 1.5
CCND3-223	ENST00000616010	CTAGE4	Q8IX94	777 aa		24.43	■■□□□ 1.5
CCND3-223	ENST00000616010	ARNTL2	Q8WYA1	636 aa		24.43	■■□□□ 1.5
CCND3-223	ENST00000616010	RAPGEF5	Q92565	580 aa		24.43	■■□□□ 1.5
CCND3-223	ENST00000616010	RBM41	Q96IZ5	413 aa	Known RBP	24.43	■■□□□ 1.5
CCND3-223	ENST00000616010	STAU2	Q9NUL3	570 aa	Known RBP eCLIP	24.43	■■□□□ 1.5
CCND3-223	ENST00000616010	NUDT5	Q9UKK9	219 aa		24.43	■■□□□ 1.5
CCND3-223	ENST00000616010	ENDOD1	O94919	500 aa		24.42	■■□□□ 1.5
CCND3-223	ENST00000616010	HMGA1	P17096	107 aa	Known RBP	24.42	■■□□□ 1.5
CCND3-223	ENST00000616010	BMP8B	P34820	402 aa		24.42	■■□□□ 1.5
CCND3-223	ENST00000616010	EPHB3	P54753	998 aa		24.42	■■□□□ 1.5
CCND3-223	ENST00000616010	RSRC2	Q7L4I2	434 aa	Known RBP	24.42	■■□□□ 1.5
CCND3-223	ENST00000616010	KREMEN2	Q8NCW0	462 aa		24.42	■■□□□ 1.5
CCND3-223	ENST00000616010	RNF139	Q8WU17	664 aa		24.42	■■□□□ 1.5
CCND3-223	ENST00000616010	SNRNP25	Q9BV90	132 aa	Known RBP	24.42	■■□□□ 1.5
CCND3-223	ENST00000616010	SLC28A3	Q9HAS3	691 aa		24.42	■■□□□ 1.5
CCND3-223	ENST00000616010	TTC7A	Q9ULT0	858 aa	Predicted RBP	24.42	■■□□□ 1.5
CCND3-223	ENST00000616010	PSEN1	P49768	467 aa		24.42	■■□□□ 1.5
CCND3-223	ENST00000616010	CLCN4	P51793	760 aa		24.42	■■□□□ 1.5
CCND3-223	ENST00000616010	PLD1	Q13393	1074 aa		24.42	■■□□□ 1.5
CCND3-223	ENST00000616010	LONRF2	Q1L5Z9	754 aa		24.42	■■□□□ 1.5
CCND3-223	ENST00000616010	CCDC185	Q8N715	623 aa		24.42	■■□□□ 1.5
CCND3-223	ENST00000616010	PGAP3	Q96FM1	320 aa	Predicted RBP	24.42	■■□□□ 1.5
CCND3-223	ENST00000616010	SMOC2	Q9H3U7	446 aa		24.42	■■□□□ 1.5
CCND3-223	ENST00000616010	GPATCH2L	Q9NWQ4	482 aa		24.42	■■□□□ 1.5
CCND3-223	ENST00000616010	ATG2A	Q2TAZ0	1938 aa		24.41	■■□□□ 1.5
CCND3-223	ENST00000616010	C8A	P07357	584 aa		24.41	■■□□□ 1.5
CCND3-223	ENST00000616010	CCDC149	Q6ZUS6	474 aa		24.41	■■□□□ 1.5
CCND3-223	ENST00000616010	ZNF572	Q7Z3I7	529 aa	Predicted RBP	24.41	■■□□□ 1.5
CCND3-223	ENST00000616010	ADAT2	Q7Z6V5	191 aa	Known RBP	24.41	■■□□□ 1.5
CCND3-223	ENST00000616010	RCOR2	Q8IZ40	523 aa		24.41	■■□□□ 1.5
CCND3-223	ENST00000616010	CLIC5	Q9NZA1	410 aa		24.41	■■□□□ 1.5
CCND3-223	ENST00000616010	FAM120A	Q9NZB2	1118 aa	Known RBP eCLIP	24.41	■■□□□ 1.5	5e-13	■□□□□ 8.9
CCND3-223	ENST00000616010	C2orf54	Q08AI8	447 aa		24.4	■■□□□ 1.5
CCND3-223	ENST00000616010	BOLA3	Q53S33	107 aa		24.4	■■□□□ 1.5
CCND3-223	ENST00000616010	MFSD7	Q6UXD7	560 aa		24.4	■■□□□ 1.5
CCND3-223	ENST00000616010	ANKS1B	Q7Z6G8	1248 aa		24.4	■■□□□ 1.5
CCND3-223	ENST00000616010	GDPD5	Q8WTR4	605 aa		24.4	■■□□□ 1.5
CCND3-223	ENST00000616010	TEKT4	Q8WW24	435 aa		24.4	■■□□□ 1.5
CCND3-223	ENST00000616010	CASP10	Q92851	521 aa		24.4	■■□□□ 1.5
CCND3-223	ENST00000616010	PSMG2	Q969U7	264 aa		24.4	■■□□□ 1.5
CCND3-223	ENST00000616010	ZNF512	Q96ME7	567 aa	Predicted RBP	24.4	■■□□□ 1.5
CCND3-223	ENST00000616010	WDR6	Q9NNW5	1121 aa	Known RBP	24.4	■■□□□ 1.5
CCND3-223	ENST00000616010	SFMBT1	Q9UHJ3	866 aa		24.4	■■□□□ 1.5
CCND3-223	ENST00000616010	MDM4	O15151	490 aa		24.4	■■□□□ 1.5
CCND3-223	ENST00000616010	LRG1	P02750	347 aa		24.4	■■□□□ 1.5
CCND3-223	ENST00000616010	RARG	P13631	454 aa		24.4	■■□□□ 1.5
CCND3-223	ENST00000616010	ZC3H12A	Q5D1E8	599 aa	Known RBP	24.4	■■□□□ 1.5
CCND3-223	ENST00000616010	KCTD6	Q8NC69	237 aa		24.4	■■□□□ 1.5
CCND3-223	ENST00000616010	SPATA4	Q8NEY3	305 aa		24.4	■■□□□ 1.5
CCND3-223	ENST00000616010	TRMT2B	Q96GJ1	504 aa	Known RBP	24.4	■■□□□ 1.5
CCND3-223	ENST00000616010	MYRFL	Q96LU7	910 aa		24.4	■■□□□ 1.5
CCND3-223	ENST00000616010	NAP1L3	Q99457	506 aa	Predicted RBP	24.4	■■□□□ 1.5
CCND3-223	ENST00000616010	MTPAP	Q9NVV4	582 aa	Known RBP eCLIP	24.4	■■□□□ 1.5
CCND3-223	ENST00000616010	MTCL1	Q9Y4B5	1905 aa	Known RBP	24.39	■■□□□ 1.5
CCND3-223	ENST00000616010	MSI1	O43347	362 aa	Known RBP	24.39	■■□□□ 1.5
CCND3-223	ENST00000616010	IGLV3-25	P01717	112 aa		24.39	■■□□□ 1.5
CCND3-223	ENST00000616010	CD48	P09326	243 aa		24.39	■■□□□ 1.5
CCND3-223	ENST00000616010	ZDHHC11B	P0C7U3	371 aa		24.39	■■□□□ 1.5
CCND3-223	ENST00000616010	RALA	P11233	206 aa		24.39	■■□□□ 1.5
CCND3-223	ENST00000616010	ERMARD	Q5T6L9	678 aa		24.39	■■□□□ 1.5
CCND3-223	ENST00000616010	PDE12	Q6L8Q7	609 aa	Known RBP	24.39	■■□□□ 1.5
CCND3-223	ENST00000616010	SPOCD1	Q6ZMY3	1216 aa		24.39	■■□□□ 1.5
CCND3-223	ENST00000616010	DNAJB7	Q7Z6W7	309 aa	Predicted RBP	24.39	■■□□□ 1.5
CCND3-223	ENST00000616010	SLC13A5	Q86YT5	568 aa	Predicted RBP	24.39	■■□□□ 1.5
CCND3-223	ENST00000616010	PDZD8	Q8NEN9	1154 aa		24.39	■■□□□ 1.5
CCND3-223	ENST00000616010	CMAS	Q8NFW8	434 aa	Predicted RBP	24.39	■■□□□ 1.5
CCND3-223	ENST00000616010	AP1M1	Q9BXS5	423 aa		24.39	■■□□□ 1.5
CCND3-223	ENST00000616010	AP4E1	Q9UPM8	1137 aa		24.39	■■□□□ 1.5
CCND3-223	ENST00000616010	PDE4DIP	Q5VU43	2346 aa		24.39	■■□□□ 1.5

Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms