RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 CACNA1SQ13698 1873 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 PDCD2Q16342 344 aaPredicted RBP9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 CXCL17Q6UXB2 119 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 STRA8Q7Z7C7 330 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 GAD1Q99259 594 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 TBCBQ99426 244 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 FRMD8P1Q9BZ68 369 aaPredicted RBP9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 IL1RAPL1Q9NZN1 696 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 TRIM33Q9UPN9 1127 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 SEC23IPQ9Y6Y8 1000 aaKnown RBP9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 SUPT3HB4E1H0 165 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 CHUKO15111 745 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 SPTLC1O15269 473 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 SUPT3HO75486 399 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 ARF4P18085 180 aaPredicted RBP9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 SERPINB5P36952 375 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 SLC39A12Q504Y0 691 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 RNF180Q86T96 592 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 CHSY1Q86X52 802 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 RFWD2Q8NHY2 731 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 FOXP3Q9BZS1 431 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 PDZD7Q9H5P4 517 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 XPNPEP1Q9NQW7 623 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 PPME1Q9Y570 386 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 TRAPPC3O43617 180 aa9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 AUHQ13825 339 aaKnown RBP9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 ARHGEF6Q15052 776 aa9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 SDHAF4Q5VUM1 108 aa9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 CYB5D1Q6P9G0 228 aa9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 FOXR2Q6PJQ5 311 aa9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 NLRP9Q7RTR0 991 aa9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 DCP1BQ8IZD4 617 aaKnown RBP9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 PDZD8Q8NEN9 1154 aa9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 BLOC1S5Q8TDH9 187 aa9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 SERPINI1Q99574 410 aa9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 MTG1Q9BT17 334 aaPredicted RBP9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 ELOVL4Q9GZR5 314 aa9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 MYLK2Q9H1R3 596 aa9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 ABHD16BQ9H3Z7 469 aa9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 ETNK2Q9NVF9 386 aa9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 KIAA1257Q9ULG3 409 aa9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 CDY2AQ9Y6F7 541 aa9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 LOC100653049A0A140TA62 436 aa9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 SDR42E2A6NKP2 422 aa9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 BTBD19C9JJ37 291 aa9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 AIM2O14862 343 aa9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 CASQ2O14958 399 aaPredicted RBP9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 KRT34O76011 436 aa9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 KCNA4P22459 653 aa9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 CSE1LP55060 971 aaKnown RBP9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 SLC39A4Q6P5W5 647 aa9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 XYLT1Q86Y38 959 aa9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 GPR152Q8TDT2 470 aa9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 OSBPL1AQ9BXW6 950 aa9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 ASB7Q9H672 318 aa9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 IL1RL2Q9HB29 575 aa9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 HMGXB4Q9UGU5 601 aa9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 AKAP11Q9UKA4 1901 aa9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 JCHAINP01591 159 aa9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 NQO1P15559 274 aaKnown RBP9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 NME5P56597 212 aa9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 CTXN3Q4LDR2 81 aa9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 FNBP1LQ5T0N5 605 aa9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 C12orf56Q8IXR9 622 aa9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 MYCBPQ99417 103 aaPredicted RBP9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 EGFL8Q99944 293 aa9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 ARHGAP28Q9P2N2 729 aa9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 A0A0B4J269 797 aa9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 CCDC22O60826 627 aa9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 TCF4P15884 667 aa9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 SKOR1P84550 965 aa9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 HTR3CQ8WXA8 447 aa9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 CPXM1Q96SM3 734 aa9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 SNRNP25Q9BV90 132 aaKnown RBP9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 ATXN3LQ9H3M9 355 aa9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 Q9H521 79 aa9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 LRRC19Q9H756 370 aa9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 STXBP5LQ9Y2K9 1186 aa9.22□□□□□ -0.93
PDLIM5-222ENST00000615540 GOLGA8QA0A0J9YX86 632 aa9.21□□□□□ -0.93
PDLIM5-222ENST00000615540 GOLGA8OA6NCC3 632 aa9.21□□□□□ -0.93
PDLIM5-222ENST00000615540 B2RBV5 119 aa9.21□□□□□ -0.93
PDLIM5-222ENST00000615540 GOLGA8NF8WBI6 632 aa9.21□□□□□ -0.93
PDLIM5-222ENST00000615540 AGPSO00116 658 aa9.21□□□□□ -0.93
PDLIM5-222ENST00000615540 KCNK1O00180 336 aa9.21□□□□□ -0.93
PDLIM5-222ENST00000615540 GNGT2O14610 69 aa9.21□□□□□ -0.93
PDLIM5-222ENST00000615540 PRRG1O14668 218 aa9.21□□□□□ -0.93
PDLIM5-222ENST00000615540 LMNAP02545 664 aaKnown RBP9.21□□□□□ -0.93
PDLIM5-222ENST00000615540 LHX1P48742 406 aa9.21□□□□□ -0.93
PDLIM5-222ENST00000615540 POU6F1Q14863 301 aa9.21□□□□□ -0.93
PDLIM5-222ENST00000615540 ANKRD20A4Q4UJ75 823 aa9.21□□□□□ -0.93
PDLIM5-222ENST00000615540 ANKRD20A2Q5SQ80 823 aa9.21□□□□□ -0.93
PDLIM5-222ENST00000615540 ANKRD20A1Q5TYW2 823 aa9.21□□□□□ -0.93
PDLIM5-222ENST00000615540 LRRC8EQ6NSJ5 796 aa9.21□□□□□ -0.93
PDLIM5-222ENST00000615540 KCNT2Q6UVM3 1135 aa9.21□□□□□ -0.93
PDLIM5-222ENST00000615540 UNC45BQ8IWX7 931 aa9.21□□□□□ -0.93
PDLIM5-222ENST00000615540 PPTC7Q8NI37 304 aa9.21□□□□□ -0.93
PDLIM5-222ENST00000615540 FBXO32Q969P5 355 aa9.21□□□□□ -0.93
PDLIM5-222ENST00000615540 TRIM62Q9BVG3 475 aa9.21□□□□□ -0.93
PDLIM5-222ENST00000615540 ULBP1Q9BZM6 244 aa9.21□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms