RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 SMARCE1Q969G3 411 aa10.31□□□□□ -0.76
VRK3-216ENST00000599342 GSDMAQ96QA5 445 aa10.31□□□□□ -0.76
VRK3-216ENST00000599342 GTPBP4Q9BZE4 634 aaKnown RBP10.31□□□□□ -0.76
VRK3-216ENST00000599342 FAM124BQ9H5Z6 455 aaPredicted RBP10.31□□□□□ -0.76
VRK3-216ENST00000599342 NMUR1Q9HB89 426 aa10.31□□□□□ -0.76
VRK3-216ENST00000599342 CISHQ9NSE2 258 aa10.31□□□□□ -0.76
VRK3-216ENST00000599342 RASAL2Q9UJF2 1139 aa10.31□□□□□ -0.76
VRK3-216ENST00000599342 NUDT5Q9UKK9 219 aa10.31□□□□□ -0.76
VRK3-216ENST00000599342 EML5Q05BV3 1969 aa10.31□□□□□ -0.76
VRK3-216ENST00000599342 MYH10P35580 1976 aa10.3□□□□□ -0.76
VRK3-216ENST00000599342 KHNYNO15037 678 aaKnown RBP10.3□□□□□ -0.76
VRK3-216ENST00000599342 GREM1O60565 184 aa10.3□□□□□ -0.76
VRK3-216ENST00000599342 CHRM1P11229 460 aaPredicted RBP10.3□□□□□ -0.76
VRK3-216ENST00000599342 HNRNPLP14866 589 aaKnown RBP eCLIP10.3□□□□□ -0.76
VRK3-216ENST00000599342 NTSR1P30989 418 aa10.3□□□□□ -0.76
VRK3-216ENST00000599342 P2RY2P41231 377 aa10.3□□□□□ -0.76
VRK3-216ENST00000599342 DGKGP49619 791 aa10.3□□□□□ -0.76
VRK3-216ENST00000599342 RAD23BP54727 409 aa10.3□□□□□ -0.76
VRK3-216ENST00000599342 YWHAEP62258 255 aaKnown RBP10.3□□□□□ -0.76
VRK3-216ENST00000599342 NUCB2P80303 420 aa10.3□□□□□ -0.76
VRK3-216ENST00000599342 COG7P83436 770 aa10.3□□□□□ -0.76
VRK3-216ENST00000599342 LRRC63Q05C16 580 aa10.3□□□□□ -0.76
VRK3-216ENST00000599342 STIM1Q13586 685 aa10.3□□□□□ -0.76
VRK3-216ENST00000599342 CBWD6Q4V339 395 aa10.3□□□□□ -0.76
VRK3-216ENST00000599342 COBLL1Q53SF7 1204 aa10.3□□□□□ -0.76
VRK3-216ENST00000599342 CBWD3Q5JTY5 395 aa10.3□□□□□ -0.76
VRK3-216ENST00000599342 CBWD5Q5RIA9 395 aa10.3□□□□□ -0.76
VRK3-216ENST00000599342 RSRC2Q7L4I2 434 aaKnown RBP10.3□□□□□ -0.76
VRK3-216ENST00000599342 MIB1Q86YT6 1006 aa10.3□□□□□ -0.76
VRK3-216ENST00000599342 CHPFQ8IZ52 775 aa10.3□□□□□ -0.76
VRK3-216ENST00000599342 SLC4A11Q8NBS3 891 aa10.3□□□□□ -0.76
VRK3-216ENST00000599342 OLIG1Q8TAK6 271 aa10.3□□□□□ -0.76
VRK3-216ENST00000599342 RLN3Q8WXF3 142 aa10.3□□□□□ -0.76
VRK3-216ENST00000599342 PIGKQ92643 395 aa10.3□□□□□ -0.76
VRK3-216ENST00000599342 BHMTQ93088 406 aa10.3□□□□□ -0.76
VRK3-216ENST00000599342 CNTNAP3BQ96NU0 1288 aa10.3□□□□□ -0.76
VRK3-216ENST00000599342 ARID3AQ99856 593 aa10.3□□□□□ -0.76
VRK3-216ENST00000599342 CNTNAP3Q9BZ76 1288 aa10.3□□□□□ -0.76
VRK3-216ENST00000599342 CLIC5Q9NZA1 410 aa10.3□□□□□ -0.76
VRK3-216ENST00000599342 MARK1Q9P0L2 795 aa10.3□□□□□ -0.76
VRK3-216ENST00000599342 STRIP2Q9ULQ0 834 aa10.3□□□□□ -0.76
VRK3-216ENST00000599342 ZNF510Q9Y2H8 683 aa10.3□□□□□ -0.76
VRK3-216ENST00000599342 USP3Q9Y6I4 520 aa10.3□□□□□ -0.76
VRK3-216ENST00000599342 LNP1A1A4G5 178 aa10.29□□□□□ -0.76
VRK3-216ENST00000599342 PSMA7O14818 248 aa10.29□□□□□ -0.76
VRK3-216ENST00000599342 TRIM24O15164 1050 aa10.29□□□□□ -0.76
VRK3-216ENST00000599342 STC2O76061 302 aa10.29□□□□□ -0.76
VRK3-216ENST00000599342 CHKAP35790 457 aa10.29□□□□□ -0.76
VRK3-216ENST00000599342 DPP6P42658 865 aa10.29□□□□□ -0.76
VRK3-216ENST00000599342 WASP42768 502 aa10.29□□□□□ -0.76
VRK3-216ENST00000599342 BCAT1P54687 386 aa10.29□□□□□ -0.76
VRK3-216ENST00000599342 MCCD1P59942 119 aaPredicted RBP10.29□□□□□ -0.76
VRK3-216ENST00000599342 EFEMP1Q12805 493 aa10.29□□□□□ -0.76
VRK3-216ENST00000599342 CUL2Q13617 745 aa10.29□□□□□ -0.76
VRK3-216ENST00000599342 GOLGA7BQ2TAP0 167 aa10.29□□□□□ -0.76
VRK3-216ENST00000599342 SGO2Q562F6 1265 aa10.29□□□□□ -0.76
VRK3-216ENST00000599342 DAB2IPQ5VWQ8 1189 aa10.29□□□□□ -0.76
VRK3-216ENST00000599342 EGFLAMQ63HQ2 1017 aa10.29□□□□□ -0.76
VRK3-216ENST00000599342 ARHGAP17Q68EM7 881 aa10.29□□□□□ -0.76
VRK3-216ENST00000599342 Q6ZNB5 142 aa10.29□□□□□ -0.76
VRK3-216ENST00000599342 ARMCX6Q7L4S7 300 aa10.29□□□□□ -0.76
VRK3-216ENST00000599342 SCD5Q86SK9 330 aa10.29□□□□□ -0.76
VRK3-216ENST00000599342 PIGZQ86VD9 579 aa10.29□□□□□ -0.76
VRK3-216ENST00000599342 ZNF276Q8N554 614 aa10.29□□□□□ -0.76
VRK3-216ENST00000599342 ANKRD52Q8NB46 1076 aa10.29□□□□□ -0.76
VRK3-216ENST00000599342 TATDN2Q93075 761 aa10.29□□□□□ -0.76
VRK3-216ENST00000599342 DCLK3Q9C098 648 aa10.29□□□□□ -0.76
VRK3-216ENST00000599342 PLK2Q9NYY3 685 aa10.29□□□□□ -0.76
VRK3-216ENST00000599342 HESX1Q9UBX0 185 aa10.29□□□□□ -0.76
VRK3-216ENST00000599342 ARMCX3Q9UH62 379 aaPredicted RBP10.29□□□□□ -0.76
VRK3-216ENST00000599342 STARD13Q9Y3M8 1113 aa10.29□□□□□ -0.76
VRK3-216ENST00000599342 SPAG17Q6Q759 2223 aa10.29□□□□□ -0.76
VRK3-216ENST00000599342 CEP250Q9BV73 2442 aa10.28□□□□□ -0.76
VRK3-216ENST00000599342 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa10.28□□□□□ -0.76
VRK3-216ENST00000599342 TRIM49BA6NDI0 452 aa10.28□□□□□ -0.76
VRK3-216ENST00000599342 C4orf47A7E2U8 309 aa10.28□□□□□ -0.76
VRK3-216ENST00000599342 XPO1O14980 1071 aaKnown RBP10.28□□□□□ -0.76
VRK3-216ENST00000599342 AP5Z1O43299 807 aa10.28□□□□□ -0.76
VRK3-216ENST00000599342 CYBBP04839 570 aa10.28□□□□□ -0.76
VRK3-216ENST00000599342 HMBSP08397 361 aa10.28□□□□□ -0.76
VRK3-216ENST00000599342 CD19P15391 556 aa10.28□□□□□ -0.76
VRK3-216ENST00000599342 GABRG2P18507 467 aa10.28□□□□□ -0.76
VRK3-216ENST00000599342 TBXAS1P24557 533 aaPredicted RBP10.28□□□□□ -0.76
VRK3-216ENST00000599342 CORO1AP31146 461 aaKnown RBP10.28□□□□□ -0.76
VRK3-216ENST00000599342 PPP1R2P41236 205 aa10.28□□□□□ -0.76
VRK3-216ENST00000599342 TKTL1P51854 596 aa10.28□□□□□ -0.76
VRK3-216ENST00000599342 PMS1P54277 932 aaKnown RBP10.28□□□□□ -0.76
VRK3-216ENST00000599342 YWHAGP61981 247 aaKnown RBP eCLIP10.28□□□□□ -0.76
VRK3-216ENST00000599342 RAB41Q5JT25 222 aa10.28□□□□□ -0.76
VRK3-216ENST00000599342 SPDYCQ5MJ68 293 aa10.28□□□□□ -0.76
VRK3-216ENST00000599342 LYSMD4Q5XG99 296 aa10.28□□□□□ -0.76
VRK3-216ENST00000599342 ANKRD40Q6AI12 368 aa10.28□□□□□ -0.76
VRK3-216ENST00000599342 SLC36A4Q6YBV0 504 aa10.28□□□□□ -0.76
VRK3-216ENST00000599342 TOGARAM2Q6ZUX3 1019 aa10.28□□□□□ -0.76
VRK3-216ENST00000599342 ZC3H3Q8IXZ2 948 aaKnown RBP10.28□□□□□ -0.76
VRK3-216ENST00000599342 TMEFF1Q8IYR6 380 aa10.28□□□□□ -0.76
VRK3-216ENST00000599342 ERCC4Q92889 916 aaPredicted RBP10.28□□□□□ -0.76
VRK3-216ENST00000599342 TIGD1Q96MW7 591 aa10.28□□□□□ -0.76
VRK3-216ENST00000599342 IPO9Q96P70 1041 aaKnown RBP10.28□□□□□ -0.76
VRK3-216ENST00000599342 LSM14BQ9BX40 385 aaKnown RBP10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms