RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 CDCA3Q99618 268 aaPredicted RBP16.12■□□□□ 0.17
UPF1-206ENST00000598471 TLE6Q9H808 572 aa16.12■□□□□ 0.17
UPF1-206ENST00000598471 MAN1C1Q9NR34 630 aa16.12■□□□□ 0.17
UPF1-206ENST00000598471 TRPM5Q9NZQ8 1165 aa16.12■□□□□ 0.17
UPF1-206ENST00000598471 CDC23Q9UJX2 597 aa16.12■□□□□ 0.17
UPF1-206ENST00000598471 USP18Q9UMW8 372 aa16.12■□□□□ 0.17
UPF1-206ENST00000598471 MYO16Q9Y6X6 1858 aa16.12■□□□□ 0.17
UPF1-206ENST00000598471 ENDOD1O94919 500 aa16.11■□□□□ 0.17
UPF1-206ENST00000598471 FYNP06241 537 aa16.11■□□□□ 0.17
UPF1-206ENST00000598471 HMGA1P17096 107 aaKnown RBP16.11■□□□□ 0.17
UPF1-206ENST00000598471 HOXA9P31269 272 aa16.11■□□□□ 0.17
UPF1-206ENST00000598471 TAS2R40P59535 323 aa16.11■□□□□ 0.17
UPF1-206ENST00000598471 CKAP4Q07065 602 aaKnown RBP16.11■□□□□ 0.17
UPF1-206ENST00000598471 CLUL1Q15846 466 aa16.11■□□□□ 0.17
UPF1-206ENST00000598471 WHAMMP3Q1A5X7 153 aa16.11■□□□□ 0.17
UPF1-206ENST00000598471 PABPC1LQ4VXU2 614 aaKnown RBP16.11■□□□□ 0.17
UPF1-206ENST00000598471 SEL1L2Q5TEA6 688 aa16.11■□□□□ 0.17
UPF1-206ENST00000598471 CCDC181Q5TID7 509 aa16.11■□□□□ 0.17
UPF1-206ENST00000598471 MSANTD2Q6P1R3 559 aa16.11■□□□□ 0.17
UPF1-206ENST00000598471 DNAJB7Q7Z6W7 309 aaPredicted RBP16.11■□□□□ 0.17
UPF1-206ENST00000598471 KATNAL2Q8IYT4 538 aa16.11■□□□□ 0.17
UPF1-206ENST00000598471 DQX1Q8TE96 717 aaKnown RBP16.11■□□□□ 0.17
UPF1-206ENST00000598471 KRT35Q92764 455 aa16.11■□□□□ 0.17
UPF1-206ENST00000598471 MRPL38Q96DV4 380 aaKnown RBP16.11■□□□□ 0.17
UPF1-206ENST00000598471 PGAP3Q96FM1 320 aaPredicted RBP16.11■□□□□ 0.17
UPF1-206ENST00000598471 RBM41Q96IZ5 413 aaKnown RBP16.11■□□□□ 0.17
UPF1-206ENST00000598471 SERPINB11Q96P15 392 aa16.11■□□□□ 0.17
UPF1-206ENST00000598471 GCNAQ96QF7 691 aa16.11■□□□□ 0.17
UPF1-206ENST00000598471 SMOC2Q9H3U7 446 aa16.11■□□□□ 0.17
UPF1-206ENST00000598471 NMUR1Q9HB89 426 aa16.11■□□□□ 0.17
UPF1-206ENST00000598471 DDIT4Q9NX09 232 aa16.11■□□□□ 0.17
UPF1-206ENST00000598471 MTMR10Q9NXD2 777 aa16.11■□□□□ 0.17
UPF1-206ENST00000598471 RNF14Q9UBS8 474 aa16.11■□□□□ 0.17
UPF1-206ENST00000598471 EPOPA6NHQ4 379 aa16.1■□□□□ 0.17
UPF1-206ENST00000598471 XYLBO75191 536 aa16.1■□□□□ 0.17
UPF1-206ENST00000598471 ZMYND10O75800 440 aa16.1■□□□□ 0.17
UPF1-206ENST00000598471 FGF19O95750 216 aa16.1■□□□□ 0.17
UPF1-206ENST00000598471 TRUB2O95900 331 aaKnown RBP16.1■□□□□ 0.17
UPF1-206ENST00000598471 KRT1P04264 644 aa16.1■□□□□ 0.17
UPF1-206ENST00000598471 HNRNPA1P09651 372 aaKnown RBP eCLIP16.1■□□□□ 0.17
UPF1-206ENST00000598471 ZDHHC11BP0C7U3 371 aa16.1■□□□□ 0.17
UPF1-206ENST00000598471 RARGP13631 454 aa16.1■□□□□ 0.17
UPF1-206ENST00000598471 CXCR5P32302 372 aa16.1■□□□□ 0.17
UPF1-206ENST00000598471 PAFAH1B1P43034 410 aa16.1■□□□□ 0.17
UPF1-206ENST00000598471 MARCKSL1P49006 195 aa16.1■□□□□ 0.17
UPF1-206ENST00000598471 PEX5P50542 639 aa16.1■□□□□ 0.17
UPF1-206ENST00000598471 HDAC4P56524 1084 aa16.1■□□□□ 0.17
UPF1-206ENST00000598471 SLC25A11Q02978 314 aaKnown RBP16.1■□□□□ 0.17
UPF1-206ENST00000598471 NME3Q13232 169 aa16.1■□□□□ 0.17
UPF1-206ENST00000598471 DUSP6Q16828 381 aa16.1■□□□□ 0.17
UPF1-206ENST00000598471 BOLA3Q53S33 107 aa16.1■□□□□ 0.17
UPF1-206ENST00000598471 SH3PXD2AQ5TCZ1 1133 aa16.1■□□□□ 0.17
UPF1-206ENST00000598471 DAB2IPQ5VWQ8 1189 aa16.1■□□□□ 0.17
UPF1-206ENST00000598471 TAC4Q86UU9 113 aa16.1■□□□□ 0.17
UPF1-206ENST00000598471 EXD1Q8NHP7 514 aa16.1■□□□□ 0.17
UPF1-206ENST00000598471 SLC22A17Q8WUG5 538 aa16.1■□□□□ 0.17
UPF1-206ENST00000598471 TEKT4Q8WW24 435 aa16.1■□□□□ 0.17
UPF1-206ENST00000598471 ALG3Q92685 438 aa16.1■□□□□ 0.17
UPF1-206ENST00000598471 ZWILCHQ9H900 591 aa16.1■□□□□ 0.17
UPF1-206ENST00000598471 MTPAPQ9NVV4 582 aaKnown RBP eCLIP16.1■□□□□ 0.17
UPF1-206ENST00000598471 PCSK1NQ9UHG2 260 aa16.1■□□□□ 0.17
UPF1-206ENST00000598471 MRFAP1Q9Y605 127 aa16.1■□□□□ 0.17
UPF1-206ENST00000598471 LAMA2P24043 3122 aaKnown RBP16.1■□□□□ 0.17
UPF1-206ENST00000598471 TMEM265A0A087WTH1 108 aa16.09■□□□□ 0.17
UPF1-206ENST00000598471 SYNJ2BP-COX16A0A087WUM0 186 aa16.09■□□□□ 0.17
UPF1-206ENST00000598471 CEP104O60308 925 aa16.09■□□□□ 0.17
UPF1-206ENST00000598471 SRGAP2O75044 1071 aa16.09■□□□□ 0.17
UPF1-206ENST00000598471 ZRANB2O95218 330 aaKnown RBP eCLIP16.09■□□□□ 0.17
UPF1-206ENST00000598471 EPCAMP16422 314 aa16.09■□□□□ 0.17
UPF1-206ENST00000598471 AIF1P55008 147 aa16.09■□□□□ 0.17
UPF1-206ENST00000598471 ARL13BQ3SXY8 428 aa16.09■□□□□ 0.17
UPF1-206ENST00000598471 OTUD1Q5VV17 481 aaPredicted RBP16.09■□□□□ 0.17
UPF1-206ENST00000598471 SNX30Q5VWJ9 437 aa16.09■□□□□ 0.17
UPF1-206ENST00000598471 BNIPLQ7Z465 357 aa16.09■□□□□ 0.17
UPF1-206ENST00000598471 RBM23Q86U06 439 aaKnown RBP16.09■□□□□ 0.17
UPF1-206ENST00000598471 CCDC50Q8IVM0 306 aa16.09■□□□□ 0.17
UPF1-206ENST00000598471 RCOR2Q8IZ40 523 aa16.09■□□□□ 0.17
UPF1-206ENST00000598471 ZNF276Q8N554 614 aa16.09■□□□□ 0.17
UPF1-206ENST00000598471 ARFGAP1Q8N6T3 406 aa16.09■□□□□ 0.17
UPF1-206ENST00000598471 GUCD1Q96NT3 240 aa16.09■□□□□ 0.17
UPF1-206ENST00000598471 NAP1L3Q99457 506 aaPredicted RBP16.09■□□□□ 0.17
UPF1-206ENST00000598471 PRDM12Q9H4Q4 367 aa16.09■□□□□ 0.17
UPF1-206ENST00000598471 ASAH2Q9NR71 780 aa16.09■□□□□ 0.17
UPF1-206ENST00000598471 ZDHHC7Q9NXF8 308 aa16.09■□□□□ 0.17
UPF1-206ENST00000598471 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.09■□□□□ 0.17
UPF1-206ENST00000598471 COX16Q9P0S2 106 aa16.09■□□□□ 0.17
UPF1-206ENST00000598471 COL4A4P53420 1690 aaPredicted RBP16.08■□□□□ 0.17
UPF1-206ENST00000598471 ZNF840PA6NDX5 716 aa16.08■□□□□ 0.16
UPF1-206ENST00000598471 PGRMC1O00264 195 aaKnown RBP16.08■□□□□ 0.16
UPF1-206ENST00000598471 PER2O15055 1255 aa16.08■□□□□ 0.16
UPF1-206ENST00000598471 MDM4O15151 490 aa16.08■□□□□ 0.16
UPF1-206ENST00000598471 CCL16O15467 120 aa16.08■□□□□ 0.16
UPF1-206ENST00000598471 IRAK2O43187 625 aa16.08■□□□□ 0.16
UPF1-206ENST00000598471 TLR5O60602 858 aa16.08■□□□□ 0.16
UPF1-206ENST00000598471 POU2F2P09086 479 aa16.08■□□□□ 0.16
UPF1-206ENST00000598471 TCF4P15884 667 aa16.08■□□□□ 0.16
UPF1-206ENST00000598471 TFE3P19532 575 aaPredicted RBP16.08■□□□□ 0.16
UPF1-206ENST00000598471 CDC25CP30307 473 aa16.08■□□□□ 0.16
UPF1-206ENST00000598471 NRIP1P48552 1158 aa16.08■□□□□ 0.16
UPF1-206ENST00000598471 TUBP50607 506 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms