RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 RAB33AQ14088 237 aa9.94□□□□□ -0.82
TRIM28-208ENST00000597172 SPA17Q15506 151 aa9.94□□□□□ -0.82
TRIM28-208ENST00000597172 MAPRE1Q15691 268 aaKnown RBP9.94□□□□□ -0.82
TRIM28-208ENST00000597172 PMF1Q6P1K2 205 aa9.94□□□□□ -0.82
TRIM28-208ENST00000597172 CLEC20AQ6ZU45 233 aa9.94□□□□□ -0.82
TRIM28-208ENST00000597172 FAM35AQ86V20 835 aa9.94□□□□□ -0.82
TRIM28-208ENST00000597172 REXO1L1PQ8IX06 675 aa9.94□□□□□ -0.82
TRIM28-208ENST00000597172 ATAD1Q8NBU5 361 aa9.94□□□□□ -0.82
TRIM28-208ENST00000597172 TMEM35BQ8NCS4 154 aa9.94□□□□□ -0.82
TRIM28-208ENST00000597172 C1orf131Q8NDD1 294 aaKnown RBP9.94□□□□□ -0.82
TRIM28-208ENST00000597172 ZMIZ2Q8NF64 920 aa9.94□□□□□ -0.82
TRIM28-208ENST00000597172 CMASQ8NFW8 434 aaPredicted RBP9.94□□□□□ -0.82
TRIM28-208ENST00000597172 KIAA1524Q8TCG1 905 aa9.94□□□□□ -0.82
TRIM28-208ENST00000597172 TRIM44Q96DX7 344 aaPredicted RBP9.94□□□□□ -0.82
TRIM28-208ENST00000597172 PGLYRP2Q96PD5 576 aa9.94□□□□□ -0.82
TRIM28-208ENST00000597172 KCNK16Q96T55 309 aa9.94□□□□□ -0.82
TRIM28-208ENST00000597172 MED10Q9BTT4 135 aa9.94□□□□□ -0.82
TRIM28-208ENST00000597172 RPP25Q9BUL9 199 aaKnown RBP9.94□□□□□ -0.82
TRIM28-208ENST00000597172 SLC4A5Q9BY07 1137 aa9.94□□□□□ -0.82
TRIM28-208ENST00000597172 LACRTQ9GZZ8 138 aa9.94□□□□□ -0.82
TRIM28-208ENST00000597172 CRISPLD1Q9H336 500 aa9.94□□□□□ -0.82
TRIM28-208ENST00000597172 CSNK1G1Q9HCP0 422 aa9.94□□□□□ -0.82
TRIM28-208ENST00000597172 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.94□□□□□ -0.82
TRIM28-208ENST00000597172 HESX1Q9UBX0 185 aa9.94□□□□□ -0.82
TRIM28-208ENST00000597172 TJP2Q9UDY2 1190 aa9.94□□□□□ -0.82
TRIM28-208ENST00000597172 PPP2R2CQ9Y2T4 447 aa9.94□□□□□ -0.82
TRIM28-208ENST00000597172 TEX15Q9BXT5 2789 aa9.94□□□□□ -0.82
TRIM28-208ENST00000597172 DOPEY1Q5JWR5 2465 aa9.94□□□□□ -0.82
TRIM28-208ENST00000597172 CELSR3Q9NYQ7 3312 aa9.93□□□□□ -0.82
TRIM28-208ENST00000597172 MTMR11A4FU01 709 aa9.93□□□□□ -0.82
TRIM28-208ENST00000597172 USP27XA6NNY8 438 aa9.93□□□□□ -0.82
TRIM28-208ENST00000597172 HHLA1C9JL84 531 aa9.93□□□□□ -0.82
TRIM28-208ENST00000597172 AP1G2O75843 785 aa9.93□□□□□ -0.82
TRIM28-208ENST00000597172 CNPP09543 421 aaKnown RBP9.93□□□□□ -0.82
TRIM28-208ENST00000597172 H2AFZP0C0S5 128 aa9.93□□□□□ -0.82
TRIM28-208ENST00000597172 MMP8P22894 467 aa9.93□□□□□ -0.82
TRIM28-208ENST00000597172 KLRC2P26717 231 aa9.93□□□□□ -0.82
TRIM28-208ENST00000597172 GABRB2P47870 512 aa9.93□□□□□ -0.82
TRIM28-208ENST00000597172 BCAT1P54687 386 aa9.93□□□□□ -0.82
TRIM28-208ENST00000597172 GALCP54803 685 aa9.93□□□□□ -0.82
TRIM28-208ENST00000597172 MAP3K7CLP57077 242 aa9.93□□□□□ -0.82
TRIM28-208ENST00000597172 KRT83P78385 493 aa9.93□□□□□ -0.82
TRIM28-208ENST00000597172 BST2Q10589 180 aaKnown RBP9.93□□□□□ -0.82
TRIM28-208ENST00000597172 NFE2Q16621 373 aaPredicted RBP9.93□□□□□ -0.82
TRIM28-208ENST00000597172 CFAP221Q4G0U5 840 aa9.93□□□□□ -0.82
TRIM28-208ENST00000597172 PTPN20Q4JDL3 420 aa9.93□□□□□ -0.82
TRIM28-208ENST00000597172 C2CD6Q53TS8 623 aa9.93□□□□□ -0.82
TRIM28-208ENST00000597172 C10orf76Q5T2E6 689 aa9.93□□□□□ -0.82
TRIM28-208ENST00000597172 LILRA6Q6PI73 481 aa9.93□□□□□ -0.82
TRIM28-208ENST00000597172 MAMSTRQ6ZN01 415 aa9.93□□□□□ -0.82
TRIM28-208ENST00000597172 C4orf50Q6ZRC1 276 aa9.93□□□□□ -0.82
TRIM28-208ENST00000597172 H2AFVQ71UI9 128 aa9.93□□□□□ -0.82
TRIM28-208ENST00000597172 MON1BQ7L1V2 547 aa9.93□□□□□ -0.82
TRIM28-208ENST00000597172 PROSER1Q86XN7 944 aa9.93□□□□□ -0.82
TRIM28-208ENST00000597172 PHF13Q86YI8 300 aaPredicted RBP9.93□□□□□ -0.82
TRIM28-208ENST00000597172 SPATA2LQ8IUW3 424 aaPredicted RBP9.93□□□□□ -0.82
TRIM28-208ENST00000597172 MCOLN2Q8IZK6 566 aa9.93□□□□□ -0.82
TRIM28-208ENST00000597172 C17orf53Q8N3J3 647 aaPredicted RBP9.93□□□□□ -0.82
TRIM28-208ENST00000597172 FAM160A2Q8N612 972 aaPredicted RBP9.93□□□□□ -0.82
TRIM28-208ENST00000597172 TTC9BQ8N6N2 239 aa9.93□□□□□ -0.82
TRIM28-208ENST00000597172 ZNF461Q8TAF7 563 aa9.93□□□□□ -0.82
TRIM28-208ENST00000597172 STK32AQ8WU08 396 aa9.93□□□□□ -0.82
TRIM28-208ENST00000597172 FUBP3Q96I24 572 aaKnown RBP eCLIP9.93□□□□□ -0.82
TRIM28-208ENST00000597172 CPXM1Q96SM3 734 aa9.93□□□□□ -0.82
TRIM28-208ENST00000597172 UBXN6Q9BZV1 441 aa9.93□□□□□ -0.82
TRIM28-208ENST00000597172 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP9.93□□□□□ -0.82
TRIM28-208ENST00000597172 KCND1Q9NSA2 647 aa9.93□□□□□ -0.82
TRIM28-208ENST00000597172 KRT82Q9NSB4 513 aa9.93□□□□□ -0.82
TRIM28-208ENST00000597172 ABI2Q9NYB9 513 aaPredicted RBP9.93□□□□□ -0.82
TRIM28-208ENST00000597172 SSX2IPQ9Y2D8 614 aa9.93□□□□□ -0.82
TRIM28-208ENST00000597172 ZKSCAN5Q9Y2L8 839 aa9.93□□□□□ -0.82
TRIM28-208ENST00000597172 SLC27A5Q9Y2P5 690 aa9.93□□□□□ -0.82
TRIM28-208ENST00000597172 NEUROG3Q9Y4Z2 214 aa9.93□□□□□ -0.82
TRIM28-208ENST00000597172 PCDHB5Q9Y5E4 795 aa9.93□□□□□ -0.82
TRIM28-208ENST00000597172 DUSP10Q9Y6W6 482 aa9.93□□□□□ -0.82
TRIM28-208ENST00000597172 ANKRD17O75179 2603 aaKnown RBP9.92□□□□□ -0.82
TRIM28-208ENST00000597172 CCDC195A0A1B0GUA6 201 aa9.92□□□□□ -0.82
TRIM28-208ENST00000597172 ANKRD62A6NC57 917 aa9.92□□□□□ -0.82
TRIM28-208ENST00000597172 PIK3R2O00459 728 aa9.92□□□□□ -0.82
TRIM28-208ENST00000597172 XPO1O14980 1071 aaKnown RBP9.92□□□□□ -0.82
TRIM28-208ENST00000597172 AXIN1O15169 862 aa9.92□□□□□ -0.82
TRIM28-208ENST00000597172 PJA2O43164 708 aa9.92□□□□□ -0.82
TRIM28-208ENST00000597172 SEC24AO95486 1093 aa9.92□□□□□ -0.82
TRIM28-208ENST00000597172 ERBB2P04626 1255 aa9.92□□□□□ -0.82
TRIM28-208ENST00000597172 FAM200BP0CF97 657 aa9.92□□□□□ -0.82
TRIM28-208ENST00000597172 SETSIPP0DME0 302 aa9.92□□□□□ -0.82
TRIM28-208ENST00000597172 CPB1P15086 417 aa9.92□□□□□ -0.82
TRIM28-208ENST00000597172 CNR2P34972 360 aa9.92□□□□□ -0.82
TRIM28-208ENST00000597172 ARHGAP25P42331 645 aa9.92□□□□□ -0.82
TRIM28-208ENST00000597172 MAGEA11P43364 429 aa9.92□□□□□ -0.82
TRIM28-208ENST00000597172 NSFP46459 744 aaKnown RBP9.92□□□□□ -0.82
TRIM28-208ENST00000597172 PLA2G4AP47712 749 aa9.92□□□□□ -0.82
TRIM28-208ENST00000597172 RGS7P49802 495 aa9.92□□□□□ -0.82
TRIM28-208ENST00000597172 VAV2P52735 878 aa9.92□□□□□ -0.82
TRIM28-208ENST00000597172 C1QBPQ07021 282 aaKnown RBP9.92□□□□□ -0.82
TRIM28-208ENST00000597172 SMARCB1Q12824 385 aa9.92□□□□□ -0.82
TRIM28-208ENST00000597172 DUSP4Q13115 394 aa9.92□□□□□ -0.82
TRIM28-208ENST00000597172 SRSF5Q13243 272 aaKnown RBP9.92□□□□□ -0.82
TRIM28-208ENST00000597172 PDCLQ13371 301 aa9.92□□□□□ -0.82
TRIM28-208ENST00000597172 FZD5Q13467 585 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms