RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 PDGFRLQ15198 375 aa11.61□□□□□ -0.55
LIG1-211ENST00000596457 CWF19L1Q69YN2 538 aaKnown RBP11.61□□□□□ -0.55
LIG1-211ENST00000596457 ZNF852Q6ZMS4 543 aa11.61□□□□□ -0.55
LIG1-211ENST00000596457 BHLHA9Q7RTU4 235 aa11.61□□□□□ -0.55
LIG1-211ENST00000596457 CPA6Q8N4T0 437 aa11.61□□□□□ -0.55
LIG1-211ENST00000596457 TMEM35BQ8NCS4 154 aa11.61□□□□□ -0.55
LIG1-211ENST00000596457 CPLX3Q8WVH0 158 aa11.61□□□□□ -0.55
LIG1-211ENST00000596457 FAM3CQ92520 227 aa11.61□□□□□ -0.55
LIG1-211ENST00000596457 ATP2A3Q93084 1043 aa11.61□□□□□ -0.55
LIG1-211ENST00000596457 ZFRQ96KR1 1074 aaKnown RBP11.61□□□□□ -0.55
LIG1-211ENST00000596457 CPXM1Q96SM3 734 aa11.61□□□□□ -0.55
LIG1-211ENST00000596457 CDK5RAP1Q96SZ6 601 aaKnown RBP11.61□□□□□ -0.55
LIG1-211ENST00000596457 SLC4A5Q9BY07 1137 aa11.61□□□□□ -0.55
LIG1-211ENST00000596457 LHX5Q9H2C1 402 aa11.61□□□□□ -0.55
LIG1-211ENST00000596457 ABCC13Q9NSE7 274 aa11.61□□□□□ -0.55
LIG1-211ENST00000596457 CLIC5Q9NZA1 410 aa11.61□□□□□ -0.55
LIG1-211ENST00000596457 MARCH2Q9P0N8 246 aa11.61□□□□□ -0.55
LIG1-211ENST00000596457 LSM7Q9UK45 103 aaKnown RBP11.61□□□□□ -0.55
LIG1-211ENST00000596457 STRIP2Q9ULQ0 834 aa11.61□□□□□ -0.55
LIG1-211ENST00000596457 MTF2Q9Y483 593 aaPredicted RBP11.61□□□□□ -0.55
LIG1-211ENST00000596457 DAAM1Q9Y4D1 1078 aa11.61□□□□□ -0.55
LIG1-211ENST00000596457 PTPRZ1P23471 2315 aaPredicted RBP11.61□□□□□ -0.55
LIG1-211ENST00000596457 TRIOO75962 3097 aa11.6□□□□□ -0.55
LIG1-211ENST00000596457 E2F8A0AVK6 867 aa11.6□□□□□ -0.55
LIG1-211ENST00000596457 SPECC1L-ADORA2AF8WAN1 911 aa11.6□□□□□ -0.55
LIG1-211ENST00000596457 ARNTLO00327 626 aa11.6□□□□□ -0.55
LIG1-211ENST00000596457 MAN2B1O00754 1011 aa11.6□□□□□ -0.55
LIG1-211ENST00000596457 SLC9A3R1O14745 358 aaPredicted RBP11.6□□□□□ -0.55
LIG1-211ENST00000596457 CAPN9O14815 690 aa11.6□□□□□ -0.55
LIG1-211ENST00000596457 GRAP2O75791 330 aa11.6□□□□□ -0.55
LIG1-211ENST00000596457 NFATC1O95644 943 aa11.6□□□□□ -0.55
LIG1-211ENST00000596457 NCAM1P13591 858 aa11.6□□□□□ -0.55
LIG1-211ENST00000596457 TCF3P15923 654 aa11.6□□□□□ -0.55
LIG1-211ENST00000596457 TCF15Q12870 199 aa11.6□□□□□ -0.55
LIG1-211ENST00000596457 NR1H3Q13133 447 aa11.6□□□□□ -0.55
LIG1-211ENST00000596457 PON2Q15165 354 aa11.6□□□□□ -0.55
LIG1-211ENST00000596457 EML3Q32P44 896 aa11.6□□□□□ -0.55
LIG1-211ENST00000596457 FMNL3Q8IVF7 1028 aa11.6□□□□□ -0.55
LIG1-211ENST00000596457 BBS7Q8IWZ6 715 aa11.6□□□□□ -0.55
LIG1-211ENST00000596457 EPS8L1Q8TE68 723 aa11.6□□□□□ -0.55
LIG1-211ENST00000596457 IPO4Q8TEX9 1081 aaKnown RBP11.6□□□□□ -0.55
LIG1-211ENST00000596457 STK32AQ8WU08 396 aa11.6□□□□□ -0.55
LIG1-211ENST00000596457 CPA5Q8WXQ8 436 aa11.6□□□□□ -0.55
LIG1-211ENST00000596457 IRGQQ8WZA9 623 aa11.6□□□□□ -0.55
LIG1-211ENST00000596457 C8orf33Q9H7E9 229 aaPredicted RBP11.6□□□□□ -0.55
LIG1-211ENST00000596457 ECT2Q9H8V3 914 aa11.6□□□□□ -0.55
LIG1-211ENST00000596457 TRPV5Q9NQA5 729 aa11.6□□□□□ -0.55
LIG1-211ENST00000596457 OLA1Q9NTK5 396 aaKnown RBP11.6□□□□□ -0.55
LIG1-211ENST00000596457 FAM86C1Q9NVL1 165 aa11.6□□□□□ -0.55
LIG1-211ENST00000596457 TBC1D14Q9P2M4 693 aa11.6□□□□□ -0.55
LIG1-211ENST00000596457 MRPS17Q9Y2R5 130 aaKnown RBP11.6□□□□□ -0.55
LIG1-211ENST00000596457 SIT1Q9Y3P8 196 aa11.6□□□□□ -0.55
LIG1-211ENST00000596457 SYNJ2BP-COX16A0A087WUM0 186 aa11.59□□□□□ -0.55
LIG1-211ENST00000596457 A0A1W2PQC6 194 aa11.59□□□□□ -0.55
LIG1-211ENST00000596457 OTOL1A6NHN0 477 aaPredicted RBP11.59□□□□□ -0.55
LIG1-211ENST00000596457 LRRC53A6NM62 1247 aa11.59□□□□□ -0.55
LIG1-211ENST00000596457 PAPSS1O43252 624 aaPredicted RBP11.59□□□□□ -0.55
LIG1-211ENST00000596457 MSI1O43347 362 aaKnown RBP11.59□□□□□ -0.55
LIG1-211ENST00000596457 ERBB2P04626 1255 aa11.59□□□□□ -0.55
LIG1-211ENST00000596457 SNX16P57768 344 aa11.59□□□□□ -0.55
LIG1-211ENST00000596457 RNASE9P60153 205 aaKnown RBP11.59□□□□□ -0.55
LIG1-211ENST00000596457 COG7P83436 770 aa11.59□□□□□ -0.55
LIG1-211ENST00000596457 CDR2Q01850 454 aa11.59□□□□□ -0.55
LIG1-211ENST00000596457 TAF5Q15542 800 aa11.59□□□□□ -0.55
LIG1-211ENST00000596457 MEA1Q16626 185 aa11.59□□□□□ -0.55
LIG1-211ENST00000596457 ANO4Q32M45 955 aa11.59□□□□□ -0.55
LIG1-211ENST00000596457 PTPN20Q4JDL3 420 aa11.59□□□□□ -0.55
LIG1-211ENST00000596457 C2CD6Q53TS8 623 aa11.59□□□□□ -0.55
LIG1-211ENST00000596457 NAA35Q5VZE5 725 aa11.59□□□□□ -0.55
LIG1-211ENST00000596457 TPGS1Q6ZTW0 290 aa11.59□□□□□ -0.55
LIG1-211ENST00000596457 FAM183BPQ6ZVS7 135 aa11.59□□□□□ -0.55
LIG1-211ENST00000596457 PHLDB2Q86SQ0 1253 aa11.59□□□□□ -0.55
LIG1-211ENST00000596457 TMEM110Q86TL2 294 aa11.59□□□□□ -0.55
LIG1-211ENST00000596457 ERICH1Q86X53 443 aa11.59□□□□□ -0.55
LIG1-211ENST00000596457 ADGRG2Q8IZP9 1017 aa11.59□□□□□ -0.55
LIG1-211ENST00000596457 SCML4Q8N228 414 aa11.59□□□□□ -0.55
LIG1-211ENST00000596457 TMEM105Q8N8V8 129 aa11.59□□□□□ -0.55
LIG1-211ENST00000596457 DDX1Q92499 740 aaKnown RBP11.59□□□□□ -0.55
LIG1-211ENST00000596457 COL26A1Q96A83 441 aa11.59□□□□□ -0.55
LIG1-211ENST00000596457 XPO4Q9C0E2 1151 aaKnown RBP11.59□□□□□ -0.55
LIG1-211ENST00000596457 LTB4R2Q9NPC1 389 aa11.59□□□□□ -0.55
LIG1-211ENST00000596457 COX16Q9P0S2 106 aa11.59□□□□□ -0.55
LIG1-211ENST00000596457 NAALADL1Q9UQQ1 740 aa11.59□□□□□ -0.55
LIG1-211ENST00000596457 MYOFQ9NZM1 2061 aa11.59□□□□□ -0.55
LIG1-211ENST00000596457 GOLGA8SH3BPF8 625 aa11.58□□□□□ -0.56
LIG1-211ENST00000596457 NCAM2O15394 837 aa11.58□□□□□ -0.56
LIG1-211ENST00000596457 SART1O43290 800 aaKnown RBP11.58□□□□□ -0.56
LIG1-211ENST00000596457 STC2O76061 302 aa11.58□□□□□ -0.56
LIG1-211ENST00000596457 CYP17A1P05093 508 aa11.58□□□□□ -0.56
LIG1-211ENST00000596457 CCDC172P0C7W6 258 aa11.58□□□□□ -0.56
LIG1-211ENST00000596457 GLULP15104 373 aa11.58□□□□□ -0.56
LIG1-211ENST00000596457 FERP16591 822 aa11.58□□□□□ -0.56
LIG1-211ENST00000596457 CHRNB2P17787 502 aa11.58□□□□□ -0.56
LIG1-211ENST00000596457 TNFAIP3P21580 790 aa11.58□□□□□ -0.56
LIG1-211ENST00000596457 TARSP26639 723 aaKnown RBP11.58□□□□□ -0.56
LIG1-211ENST00000596457 CORO1AP31146 461 aaKnown RBP11.58□□□□□ -0.56
LIG1-211ENST00000596457 CTHP32929 405 aa11.58□□□□□ -0.56
LIG1-211ENST00000596457 GJA4P35212 333 aa11.58□□□□□ -0.56
LIG1-211ENST00000596457 RPL34P49207 117 aaKnown RBP11.58□□□□□ -0.56
LIG1-211ENST00000596457 ZNF445P59923 1031 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms