RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 FBXO44Q9H4M3 255 aa10.53□□□□□ -0.72
LIG1-209ENST00000596104 ZSCAN16Q9H4T2 348 aaPredicted RBP10.53□□□□□ -0.72
LIG1-209ENST00000596104 FAM124BQ9H5Z6 455 aaPredicted RBP10.53□□□□□ -0.72
LIG1-209ENST00000596104 NMUR1Q9HB89 426 aa10.53□□□□□ -0.72
LIG1-209ENST00000596104 TLR8Q9NR97 1041 aaKnown RBP10.53□□□□□ -0.72
LIG1-209ENST00000596104 WDR35Q9P2L0 1181 aa10.53□□□□□ -0.72
LIG1-209ENST00000596104 CGNQ9P2M7 1197 aaKnown RBP10.53□□□□□ -0.72
LIG1-209ENST00000596104 HMGXB4Q9UGU5 601 aa10.53□□□□□ -0.72
LIG1-209ENST00000596104 FBXO10Q9UK96 956 aa10.53□□□□□ -0.72
LIG1-209ENST00000596104 SCML2Q9UQR0 700 aa10.53□□□□□ -0.72
LIG1-209ENST00000596104 WASH3PC4AMC7 463 aa10.52□□□□□ -0.73
LIG1-209ENST00000596104 ZBTB24O43167 697 aaPredicted RBP10.52□□□□□ -0.73
LIG1-209ENST00000596104 CBFA2T3O75081 653 aa10.52□□□□□ -0.73
LIG1-209ENST00000596104 PPP6R2O75170 966 aa10.52□□□□□ -0.73
LIG1-209ENST00000596104 MAOBP27338 520 aa10.52□□□□□ -0.73
LIG1-209ENST00000596104 ATP5C1P36542 298 aaKnown RBP10.52□□□□□ -0.73
LIG1-209ENST00000596104 DGKGP49619 791 aa10.52□□□□□ -0.73
LIG1-209ENST00000596104 NDST1P52848 882 aa10.52□□□□□ -0.73
LIG1-209ENST00000596104 AP3M2P53677 418 aa10.52□□□□□ -0.73
LIG1-209ENST00000596104 MAP3K7CLP57077 242 aa10.52□□□□□ -0.73
LIG1-209ENST00000596104 SCAPQ12770 1279 aa10.52□□□□□ -0.73
LIG1-209ENST00000596104 GRIK2Q13002 908 aa10.52□□□□□ -0.73
LIG1-209ENST00000596104 ORC1Q13415 861 aa10.52□□□□□ -0.73
LIG1-209ENST00000596104 ENPP2Q13822 863 aa10.52□□□□□ -0.73
LIG1-209ENST00000596104 TRIP6Q15654 476 aaKnown RBP10.52□□□□□ -0.73
LIG1-209ENST00000596104 KNOP1Q1ED39 458 aaKnown RBP10.52□□□□□ -0.73
LIG1-209ENST00000596104 PLEKHG6Q3KR16 790 aa10.52□□□□□ -0.73
LIG1-209ENST00000596104 KLHDC10Q6PID8 442 aa10.52□□□□□ -0.73
LIG1-209ENST00000596104 METTL3Q86U44 580 aaKnown RBP10.52□□□□□ -0.73
LIG1-209ENST00000596104 NAXDQ8IW45 347 aa10.52□□□□□ -0.73
LIG1-209ENST00000596104 RGL4Q8IZJ4 473 aa10.52□□□□□ -0.73
LIG1-209ENST00000596104 C12orf29Q8N999 325 aa10.52□□□□□ -0.73
LIG1-209ENST00000596104 DNASE2BQ8WZ79 361 aa10.52□□□□□ -0.73
LIG1-209ENST00000596104 FOXJ1Q92949 421 aa10.52□□□□□ -0.73
LIG1-209ENST00000596104 INTS4Q96HW7 963 aaKnown RBP10.52□□□□□ -0.73
LIG1-209ENST00000596104 BLZF1Q9H2G9 400 aa10.52□□□□□ -0.73
LIG1-209ENST00000596104 MAGEF1Q9HAY2 307 aa10.52□□□□□ -0.73
LIG1-209ENST00000596104 SLC39A2Q9NP94 309 aa10.52□□□□□ -0.73
LIG1-209ENST00000596104 FAM49BQ9NUQ9 324 aa10.52□□□□□ -0.73
LIG1-209ENST00000596104 DMAC2Q9NW81 257 aa10.52□□□□□ -0.73
LIG1-209ENST00000596104 USP36Q9P275 1121 aaKnown RBP10.52□□□□□ -0.73
LIG1-209ENST00000596104 SUSD2Q9UGT4 822 aa10.52□□□□□ -0.73
LIG1-209ENST00000596104 LSM7Q9UK45 103 aaKnown RBP10.52□□□□□ -0.73
LIG1-209ENST00000596104 DSPP15924 2871 aaKnown RBP10.52□□□□□ -0.73
LIG1-209ENST00000596104 MYOFQ9NZM1 2061 aa10.51□□□□□ -0.73
LIG1-209ENST00000596104 PVALEFA0A1B0GWK0 134 aa10.51□□□□□ -0.73
LIG1-209ENST00000596104 MDM4O15151 490 aa10.51□□□□□ -0.73
LIG1-209ENST00000596104 CYP26A1O43174 497 aa10.51□□□□□ -0.73
LIG1-209ENST00000596104 CUTAO60888 179 aa10.51□□□□□ -0.73
LIG1-209ENST00000596104 NDUFS2O75306 463 aa10.51□□□□□ -0.73
LIG1-209ENST00000596104 ASS1P00966 412 aaKnown RBP10.51□□□□□ -0.73
LIG1-209ENST00000596104 PENKP01210 267 aaPredicted RBP10.51□□□□□ -0.73
LIG1-209ENST00000596104 FTH1P19P0C7X4 201 aa10.51□□□□□ -0.73
LIG1-209ENST00000596104 FAM200BP0CF97 657 aa10.51□□□□□ -0.73
LIG1-209ENST00000596104 CD6P30203 668 aa10.51□□□□□ -0.73
LIG1-209ENST00000596104 DLG4P78352 724 aa10.51□□□□□ -0.73
LIG1-209ENST00000596104 GOLGA8FQ08AF8 430 aa10.51□□□□□ -0.73
LIG1-209ENST00000596104 GOLGA8DPQ0D2H9 430 aa10.51□□□□□ -0.73
LIG1-209ENST00000596104 ZACNQ401N2 412 aa10.51□□□□□ -0.73
LIG1-209ENST00000596104 FUT11Q495W5 492 aa10.51□□□□□ -0.73
LIG1-209ENST00000596104 WDR45BQ5MNZ6 344 aa10.51□□□□□ -0.73
LIG1-209ENST00000596104 SYCP2LQ5T4T6 812 aa10.51□□□□□ -0.73
LIG1-209ENST00000596104 KIAA1324Q6UXG2 1013 aaKnown RBP10.51□□□□□ -0.73
LIG1-209ENST00000596104 CCNI2Q6ZMN8 369 aaPredicted RBP10.51□□□□□ -0.73
LIG1-209ENST00000596104 CLEC20AQ6ZU45 233 aa10.51□□□□□ -0.73
LIG1-209ENST00000596104 SCD5Q86SK9 330 aa10.51□□□□□ -0.73
LIG1-209ENST00000596104 GLRX5Q86SX6 157 aa10.51□□□□□ -0.73
LIG1-209ENST00000596104 UNC93AQ86WB7 457 aa10.51□□□□□ -0.73
LIG1-209ENST00000596104 SLC9A9Q8IVB4 645 aa10.51□□□□□ -0.73
LIG1-209ENST00000596104 TMEM174Q8WUU8 243 aa10.51□□□□□ -0.73
LIG1-209ENST00000596104 BHMTQ93088 406 aa10.51□□□□□ -0.73
LIG1-209ENST00000596104 TOE1Q96GM8 510 aaKnown RBP10.51□□□□□ -0.73
LIG1-209ENST00000596104 TWNKQ96RR1 684 aa10.51□□□□□ -0.73
LIG1-209ENST00000596104 HNRNPABQ99729 332 aaKnown RBP10.51□□□□□ -0.73
LIG1-209ENST00000596104 ZDHHC5Q9C0B5 715 aa10.51□□□□□ -0.73
LIG1-209ENST00000596104 MKRN2Q9H000 416 aaKnown RBP10.51□□□□□ -0.73
LIG1-209ENST00000596104 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.51□□□□□ -0.731e-14■■■■■ 49.4
LIG1-209ENST00000596104 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.51□□□□□ -0.73
LIG1-209ENST00000596104 WSB2Q9NYS7 404 aaPredicted RBP10.51□□□□□ -0.73
LIG1-209ENST00000596104 PLK2Q9NYY3 685 aa10.51□□□□□ -0.73
LIG1-209ENST00000596104 TFIP11Q9UBB9 837 aaKnown RBP10.51□□□□□ -0.73
LIG1-209ENST00000596104 SLC27A6Q9Y2P4 619 aa10.51□□□□□ -0.73
LIG1-209ENST00000596104 NFE2L3Q9Y4A8 694 aa10.51□□□□□ -0.73
LIG1-209ENST00000596104 GPSM3Q9Y4H4 160 aa10.51□□□□□ -0.73
LIG1-209ENST00000596104 STON1Q9Y6Q2 735 aa10.51□□□□□ -0.73
LIG1-209ENST00000596104 FREM2Q5SZK8 3169 aa10.51□□□□□ -0.73
LIG1-209ENST00000596104 ANKRD11Q6UB99 2663 aaPredicted RBP10.51□□□□□ -0.73
LIG1-209ENST00000596104 MYO18AQ92614 2054 aaKnown RBP10.5□□□□□ -0.73
LIG1-209ENST00000596104 A0A1B0GTW7 788 aa10.5□□□□□ -0.73
LIG1-209ENST00000596104 A0A1W2PQH9 124 aa10.5□□□□□ -0.73
LIG1-209ENST00000596104 KCNJ18B7U540 433 aa10.5□□□□□ -0.73
LIG1-209ENST00000596104 POLR2DO15514 142 aaKnown RBP10.5□□□□□ -0.73
LIG1-209ENST00000596104 STX6O43752 255 aa10.5□□□□□ -0.73
LIG1-209ENST00000596104 STC2O76061 302 aa10.5□□□□□ -0.73
LIG1-209ENST00000596104 YEATS4O95619 227 aa10.5□□□□□ -0.73
LIG1-209ENST00000596104 KLKB1P03952 638 aa10.5□□□□□ -0.73
LIG1-209ENST00000596104 RPN1P04843 607 aaKnown RBP10.5□□□□□ -0.73
LIG1-209ENST00000596104 RARGP13631 454 aa10.5□□□□□ -0.73
LIG1-209ENST00000596104 P4HA1P13674 534 aa10.5□□□□□ -0.73
LIG1-209ENST00000596104 GNSP15586 552 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms