RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 SLC18A1P54219 525 aa20.46■□□□□ 0.87
CLIP3-206ENST00000593074 CAP1Q01518 475 aa20.46■□□□□ 0.87
CLIP3-206ENST00000593074 CCSAPQ6IQ19 270 aaPredicted RBP20.46■□□□□ 0.87
CLIP3-206ENST00000593074 SGSM3Q96HU1 749 aa20.46■□□□□ 0.87
CLIP3-206ENST00000593074 GAD1Q99259 594 aa20.46■□□□□ 0.87
CLIP3-206ENST00000593074 DHRS4Q9BTZ2 278 aa20.46■□□□□ 0.87
CLIP3-206ENST00000593074 TSPYL2Q9H2G4 693 aaPredicted RBP20.46■□□□□ 0.87
CLIP3-206ENST00000593074 DHX35Q9H5Z1 703 aaKnown RBP20.46■□□□□ 0.87
CLIP3-206ENST00000593074 SAMD15Q9P1V8 674 aa20.46■□□□□ 0.87
CLIP3-206ENST00000593074 THP07101 528 aa20.46■□□□□ 0.87
CLIP3-206ENST00000593074 ZFXP17010 805 aaPredicted RBP20.46■□□□□ 0.87
CLIP3-206ENST00000593074 PTPN1P18031 435 aaKnown RBP20.46■□□□□ 0.87
CLIP3-206ENST00000593074 CST5P28325 142 aaPredicted RBP20.46■□□□□ 0.87
CLIP3-206ENST00000593074 RBL1P28749 1068 aa20.46■□□□□ 0.87
CLIP3-206ENST00000593074 MLH1P40692 756 aa20.46■□□□□ 0.87
CLIP3-206ENST00000593074 MAGEA6P43360 314 aa20.46■□□□□ 0.87
CLIP3-206ENST00000593074 LIG3P49916 1009 aa20.46■□□□□ 0.87
CLIP3-206ENST00000593074 SLC8A3P57103 927 aa20.46■□□□□ 0.87
CLIP3-206ENST00000593074 ADCY1Q08828 1119 aa20.46■□□□□ 0.87
CLIP3-206ENST00000593074 ADIGQ0VDE8 80 aa20.46■□□□□ 0.87
CLIP3-206ENST00000593074 ITIH4Q14624 930 aa20.46■□□□□ 0.87
CLIP3-206ENST00000593074 PKN2Q16513 984 aaKnown RBP20.46■□□□□ 0.87
CLIP3-206ENST00000593074 BBS9Q3SYG4 887 aa20.46■□□□□ 0.87
CLIP3-206ENST00000593074 RNF187Q5TA31 235 aaPredicted RBP20.46■□□□□ 0.87
CLIP3-206ENST00000593074 WSCD1Q658N2 575 aa20.46■□□□□ 0.87
CLIP3-206ENST00000593074 C3orf62Q6ZUJ4 267 aa20.46■□□□□ 0.87
CLIP3-206ENST00000593074 CCDC121Q6ZUS5 278 aa20.46■□□□□ 0.87
CLIP3-206ENST00000593074 PAQR9Q6ZVX9 377 aa20.46■□□□□ 0.87
CLIP3-206ENST00000593074 PCSK9Q8NBP7 692 aaKnown RBP20.46■□□□□ 0.87
CLIP3-206ENST00000593074 KCTD13Q8WZ19 329 aa20.46■□□□□ 0.87
CLIP3-206ENST00000593074 AGO3Q9H9G7 860 aaKnown RBP20.46■□□□□ 0.87
CLIP3-206ENST00000593074 KIF3CO14782 793 aa20.45■□□□□ 0.86
CLIP3-206ENST00000593074 DAB1O75553 588 aa20.45■□□□□ 0.86
CLIP3-206ENST00000593074 TOMM70O94826 608 aa20.45■□□□□ 0.86
CLIP3-206ENST00000593074 FSBPO95073 299 aa20.45■□□□□ 0.86
CLIP3-206ENST00000593074 XRCC4Q13426 336 aa20.45■□□□□ 0.86
CLIP3-206ENST00000593074 KLHL38Q2WGJ6 581 aa20.45■□□□□ 0.86
CLIP3-206ENST00000593074 SLC25A52Q3SY17 297 aa20.45■□□□□ 0.86
CLIP3-206ENST00000593074 CDKL3Q8IVW4 592 aaPredicted RBP20.45■□□□□ 0.86
CLIP3-206ENST00000593074 CCDC185Q8N715 623 aa20.45■□□□□ 0.86
CLIP3-206ENST00000593074 ANKS4BQ8N8V4 417 aa20.45■□□□□ 0.86
CLIP3-206ENST00000593074 KCTD15Q96SI1 283 aaPredicted RBP20.45■□□□□ 0.86
CLIP3-206ENST00000593074 FRMD8Q9BZ67 464 aaPredicted RBP20.45■□□□□ 0.86
CLIP3-206ENST00000593074 OSBPL7Q9BZF2 842 aa20.45■□□□□ 0.86
CLIP3-206ENST00000593074 TRABDQ9H4I3 376 aa20.45■□□□□ 0.86
CLIP3-206ENST00000593074 MLXIPLQ9NP71 852 aa20.45■□□□□ 0.86
CLIP3-206ENST00000593074 GIT1Q9Y2X7 761 aa20.45■□□□□ 0.86
CLIP3-206ENST00000593074 OAS1P00973 400 aaKnown RBP20.44■□□□□ 0.86
CLIP3-206ENST00000593074 ACAT1P24752 427 aaKnown RBP20.44■□□□□ 0.86
CLIP3-206ENST00000593074 BNIPLQ7Z465 357 aa20.44■□□□□ 0.86
CLIP3-206ENST00000593074 LPPQ93052 612 aa20.44■□□□□ 0.86
CLIP3-206ENST00000593074 MAGEB18Q96M61 343 aa20.44■□□□□ 0.86
CLIP3-206ENST00000593074 CSPG4P5Q96PW8 444 aa20.44■□□□□ 0.86
CLIP3-206ENST00000593074 RAB6BQ9NRW1 208 aa20.44■□□□□ 0.86
CLIP3-206ENST00000593074 USP3Q9Y6I4 520 aa20.44■□□□□ 0.86
CLIP3-206ENST00000593074 GOLGA6L7A0A1B0GV03 622 aa20.44■□□□□ 0.86
CLIP3-206ENST00000593074 TCP11X1B4DZS4 312 aa20.44■□□□□ 0.86
CLIP3-206ENST00000593074 CLDN5O00501 218 aa20.44■□□□□ 0.86
CLIP3-206ENST00000593074 IGFBP6P24592 240 aaPredicted RBP20.44■□□□□ 0.86
CLIP3-206ENST00000593074 STX2P32856 288 aa20.44■□□□□ 0.86
CLIP3-206ENST00000593074 NR2C2P49116 596 aa20.44■□□□□ 0.86
CLIP3-206ENST00000593074 MRPS5P82675 430 aaKnown RBP20.44■□□□□ 0.86
CLIP3-206ENST00000593074 OTUD1Q5VV17 481 aaPredicted RBP20.44■□□□□ 0.86
CLIP3-206ENST00000593074 KIAA0319Q5VV43 1072 aa20.44■□□□□ 0.86
CLIP3-206ENST00000593074 ADGRD1Q6QNK2 874 aa20.44■□□□□ 0.86
CLIP3-206ENST00000593074 C4orf22Q6V702 233 aa20.44■□□□□ 0.86
CLIP3-206ENST00000593074 CLEC20AQ6ZU45 233 aa20.44■□□□□ 0.86
CLIP3-206ENST00000593074 MRPL10Q7Z7H8 261 aaKnown RBP20.44■□□□□ 0.86
CLIP3-206ENST00000593074 TAX1BP1Q86VP1 789 aa20.44■□□□□ 0.86
CLIP3-206ENST00000593074 PSTKQ8IV42 348 aaKnown RBP20.44■□□□□ 0.86
CLIP3-206ENST00000593074 PALM2Q8IXS6 379 aa20.44■□□□□ 0.86
CLIP3-206ENST00000593074 GDAP1Q8TB36 358 aa20.44■□□□□ 0.86
CLIP3-206ENST00000593074 FBF1Q8TES7 1133 aa20.44■□□□□ 0.86
CLIP3-206ENST00000593074 NT5C3BQ969T7 300 aa20.44■□□□□ 0.86
CLIP3-206ENST00000593074 MIOSQ9NXC5 875 aa20.44■□□□□ 0.86
CLIP3-206ENST00000593074 PADI3Q9ULW8 664 aa20.44■□□□□ 0.86
CLIP3-206ENST00000593074 SMG5Q9UPR3 1016 aaKnown RBP20.44■□□□□ 0.86
CLIP3-206ENST00000593074 GTF3C5Q9Y5Q8 519 aaPredicted RBP20.44■□□□□ 0.86
CLIP3-206ENST00000593074 TEX264Q9Y6I9 313 aa20.44■□□□□ 0.86
CLIP3-206ENST00000593074 ARL5CA6NH57 179 aa20.43■□□□□ 0.86
CLIP3-206ENST00000593074 SNX3O60493 162 aa20.43■□□□□ 0.86
CLIP3-206ENST00000593074 BEST1O76090 585 aa20.43■□□□□ 0.86
CLIP3-206ENST00000593074 ATP2A2P16615 1042 aaKnown RBP20.43■□□□□ 0.86
CLIP3-206ENST00000593074 KRT15P19012 456 aa20.43■□□□□ 0.86
CLIP3-206ENST00000593074 CD52P31358 61 aa20.43■□□□□ 0.86
CLIP3-206ENST00000593074 GBE1Q04446 702 aa20.43■□□□□ 0.86
CLIP3-206ENST00000593074 EFTUD2Q15029 972 aaKnown RBP eCLIP20.43■□□□□ 0.86
CLIP3-206ENST00000593074 SLC45A4Q5BKX6 768 aa20.43■□□□□ 0.86
CLIP3-206ENST00000593074 REM2Q8IYK8 340 aaPredicted RBP20.43■□□□□ 0.86
CLIP3-206ENST00000593074 DEFB106AQ8N104 65 aa20.43■□□□□ 0.86
CLIP3-206ENST00000593074 TMEM86AQ8N2M4 240 aa20.43■□□□□ 0.86
CLIP3-206ENST00000593074 DENND1AQ8TEH3 1009 aa20.43■□□□□ 0.86
CLIP3-206ENST00000593074 CCT6BQ92526 530 aa20.43■□□□□ 0.86
CLIP3-206ENST00000593074 SENP8Q96LD8 212 aa20.43■□□□□ 0.86
CLIP3-206ENST00000593074 SMC6Q96SB8 1091 aa20.43■□□□□ 0.86
CLIP3-206ENST00000593074 PAFAH2Q99487 392 aa20.43■□□□□ 0.86
CLIP3-206ENST00000593074 ELAC2Q9BQ52 826 aaKnown RBP20.43■□□□□ 0.86
CLIP3-206ENST00000593074 KLC2Q9H0B6 622 aa20.43■□□□□ 0.86
CLIP3-206ENST00000593074 RCOR3Q9P2K3 495 aaPredicted RBP20.43■□□□□ 0.86
CLIP3-206ENST00000593074 CHMP2BQ9UQN3 213 aa20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms