RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 C15orf59Q2T9L4 293 aaPredicted RBP6.45□□□□□ -1.38
LIG3-206ENST00000586058 PROX2Q3B8N5 592 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 PPP6R3Q5H9R7 873 aaPredicted RBP6.45□□□□□ -1.38
LIG3-206ENST00000586058 RAB41Q5JT25 222 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 RTP2Q5QGT7 225 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 ERMARDQ5T6L9 678 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 ACBD5Q5T8D3 534 aaPredicted RBP6.45□□□□□ -1.38
LIG3-206ENST00000586058 KAZNQ674X7 775 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 CCDC137Q6PK04 289 aaKnown RBP6.45□□□□□ -1.38
LIG3-206ENST00000586058 SPOCD1Q6ZMY3 1216 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 CEP128Q6ZU80 1094 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 SYDE1Q6ZW31 735 aaPredicted RBP6.45□□□□□ -1.38
LIG3-206ENST00000586058 PDZD4Q76G19 769 aaPredicted RBP6.45□□□□□ -1.38
LIG3-206ENST00000586058 BZW1Q7L1Q6 419 aaKnown RBP6.45□□□□□ -1.38
LIG3-206ENST00000586058 ADAT2Q7Z6V5 191 aaKnown RBP6.45□□□□□ -1.38
LIG3-206ENST00000586058 DDX53Q86TM3 631 aaKnown RBP6.45□□□□□ -1.38
LIG3-206ENST00000586058 ITIH5Q86UX2 942 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 VSIG1Q86XK7 387 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 PSTKQ8IV42 348 aaKnown RBP6.45□□□□□ -1.38
LIG3-206ENST00000586058 HERC6Q8IVU3 1022 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 GPR65Q8IYL9 337 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 DEFB106AQ8N104 65 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 VPS52Q8N1B4 723 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 CRIPAKQ8N1N5 446 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 CLEC4CQ8WTT0 213 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP6.45□□□□□ -1.38
LIG3-206ENST00000586058 ALG3Q92685 438 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 MAGOHBQ96A72 148 aaKnown RBP6.45□□□□□ -1.38
LIG3-206ENST00000586058 SPATA17Q96L03 361 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 SAMD11Q96NU1 681 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 RUFY1Q96T51 708 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 KCNK16Q96T55 309 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 RAD9AQ99638 391 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 EPAS1Q99814 870 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 LPIN3Q9BQK8 851 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 RTP3Q9BQQ7 232 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 ZNF670Q9BS34 389 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 DDX23Q9BUQ8 820 aaKnown RBP6.45□□□□□ -1.38
LIG3-206ENST00000586058 AP1M1Q9BXS5 423 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 EMILIN2Q9BXX0 1053 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 TRIM7Q9C029 511 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 DDX47Q9H0S4 455 aaKnown RBP6.45□□□□□ -1.38
LIG3-206ENST00000586058 DHX35Q9H5Z1 703 aaKnown RBP6.45□□□□□ -1.38
LIG3-206ENST00000586058 CWH43Q9H720 699 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 PRDM16Q9HAZ2 1276 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 ARFGAP3Q9NP61 516 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 FAM114A2Q9NRY5 505 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 KLHL11Q9NVR0 708 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 DDIT4Q9NX09 232 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.45□□□□□ -1.38
LIG3-206ENST00000586058 HSFX1Q9UBD0 423 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 DPP7Q9UHL4 492 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 SLC12A6Q9UHW9 1150 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 MAFFQ9ULX9 164 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 AP4E1Q9UPM8 1137 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 EFR3BQ9Y2G0 817 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP6.44□□□□□ -1.38
LIG3-206ENST00000586058 PI4K2BG5E9Z4 385 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 APOL1O14791 398 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 B4GALT3O60512 393 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 BEST1O76090 585 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 FGF18O76093 207 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 STK10O94804 968 aaKnown RBP6.44□□□□□ -1.38
LIG3-206ENST00000586058 TRUB2O95900 331 aaKnown RBP6.44□□□□□ -1.38
LIG3-206ENST00000586058 LRG1P02750 347 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 CSH1P0DML2 217 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 CSH2P0DML3 217 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 HAPLN1P10915 354 aaPredicted RBP6.44□□□□□ -1.38
LIG3-206ENST00000586058 PYGMP11217 842 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 TGM2P21980 687 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 KDELR1P24390 212 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 DNAJB2P25686 324 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 TNNT3P45378 269 aaPredicted RBP6.44□□□□□ -1.38
LIG3-206ENST00000586058 PPP3CCP48454 512 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 PEX5P50542 639 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 KPNA1P52294 538 aaPredicted RBP6.44□□□□□ -1.38
LIG3-206ENST00000586058 EPHB3P54753 998 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 EPHB4P54760 987 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 TAS2R40P59535 323 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 HTRA4P83105 476 aaPredicted RBP6.44□□□□□ -1.38
LIG3-206ENST00000586058 OGDHQ02218 1023 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 DSG1Q02413 1049 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 UBE3AQ05086 875 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 ADCY1Q08828 1119 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 ZNF252P-AS1Q0IIN9 211 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 CUL1Q13616 776 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 MRPL58Q14197 206 aaKnown RBP6.44□□□□□ -1.38
LIG3-206ENST00000586058 CCDC14Q49A88 953 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 BRMS1LQ5PSV4 323 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 DCAF12L1Q5VU92 463 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 KIAA0319Q5VV43 1072 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 SLC8B1Q6J4K2 584 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 PRSS55Q6UWB4 352 aaPredicted RBP6.44□□□□□ -1.38
LIG3-206ENST00000586058 CD300LGQ6UXG3 332 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 CCDC149Q6ZUS6 474 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 PAQR9Q6ZVX9 377 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 BEND5Q7L4P6 421 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 TMC7Q7Z402 723 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 MON1AQ86VX9 555 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 GOLGA6L1Q8N7Z2 621 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms