RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 GOLGA1Q92805 767 aa26.19■■□□□ 1.78
SHMT1-207ENST00000580002 HERPUD2Q9BSE4 406 aa26.19■■□□□ 1.78
SHMT1-207ENST00000580002 L2HGDHQ9H9P8 463 aa26.19■■□□□ 1.78
SHMT1-207ENST00000580002 ABCC13Q9NSE7 274 aa26.19■■□□□ 1.78
SHMT1-207ENST00000580002 CCL16O15467 120 aa26.18■■□□□ 1.78
SHMT1-207ENST00000580002 MSI1O43347 362 aaKnown RBP26.18■■□□□ 1.78
SHMT1-207ENST00000580002 RARAP10276 462 aa26.18■■□□□ 1.78
SHMT1-207ENST00000580002 TCP1P17987 556 aaKnown RBP26.18■■□□□ 1.78
SHMT1-207ENST00000580002 PCK1P35558 622 aa26.18■■□□□ 1.78
SHMT1-207ENST00000580002 ACAP1Q15027 740 aa26.18■■□□□ 1.78
SHMT1-207ENST00000580002 CA9Q16790 459 aa26.18■■□□□ 1.78
SHMT1-207ENST00000580002 UBL4BQ8N7F7 174 aa26.18■■□□□ 1.78
SHMT1-207ENST00000580002 RNF25Q96BH1 459 aaPredicted RBP26.18■■□□□ 1.78
SHMT1-207ENST00000580002 CCSER2Q9H7U1 834 aa26.18■■□□□ 1.78
SHMT1-207ENST00000580002 ATG2AQ2TAZ0 1938 aa26.18■■□□□ 1.78
SHMT1-207ENST00000580002 I6L893 689 aaPredicted RBP26.18■■□□□ 1.78
SHMT1-207ENST00000580002 RIOK3O14730 519 aaKnown RBP26.18■■□□□ 1.78
SHMT1-207ENST00000580002 TADA3O75528 432 aa26.18■■□□□ 1.78
SHMT1-207ENST00000580002 ENDOD1O94919 500 aa26.18■■□□□ 1.78
SHMT1-207ENST00000580002 ZDHHC11BP0C7U3 371 aa26.18■■□□□ 1.78
SHMT1-207ENST00000580002 CSH1P0DML2 217 aa26.18■■□□□ 1.78
SHMT1-207ENST00000580002 CSH2P0DML3 217 aa26.18■■□□□ 1.78
SHMT1-207ENST00000580002 RARGP13631 454 aa26.18■■□□□ 1.78
SHMT1-207ENST00000580002 EPHB3P54753 998 aa26.18■■□□□ 1.78
SHMT1-207ENST00000580002 RWDD2BP57060 319 aa26.18■■□□□ 1.78
SHMT1-207ENST00000580002 ZC3H12AQ5D1E8 599 aaKnown RBP26.18■■□□□ 1.78
SHMT1-207ENST00000580002 ZNF697Q5TEC3 545 aa26.18■■□□□ 1.78
SHMT1-207ENST00000580002 TMEM150AQ86TG1 271 aa26.18■■□□□ 1.78
SHMT1-207ENST00000580002 HSPH1Q92598 858 aa26.18■■□□□ 1.78
SHMT1-207ENST00000580002 PSMG2Q969U7 264 aa26.18■■□□□ 1.78
SHMT1-207ENST00000580002 WDR6Q9NNW5 1121 aaKnown RBP26.18■■□□□ 1.78
SHMT1-207ENST00000580002 MAN1C1Q9NR34 630 aa26.18■■□□□ 1.78
SHMT1-207ENST00000580002 DDIT4Q9NX09 232 aa26.18■■□□□ 1.78
SHMT1-207ENST00000580002 COL4A4P53420 1690 aaPredicted RBP26.17■■□□□ 1.78
SHMT1-207ENST00000580002 PSTPIP1O43586 416 aa26.17■■□□□ 1.78
SHMT1-207ENST00000580002 CD48P09326 243 aa26.17■■□□□ 1.78
SHMT1-207ENST00000580002 DEUP1Q05D60 604 aa26.17■■□□□ 1.78
SHMT1-207ENST00000580002 CARD6Q9BX69 1037 aa26.17■■□□□ 1.78
SHMT1-207ENST00000580002 MTPAPQ9NVV4 582 aaKnown RBP eCLIP26.17■■□□□ 1.78
SHMT1-207ENST00000580002 COMMD8Q9NX08 183 aa26.17■■□□□ 1.78
SHMT1-207ENST00000580002 LCMT1Q9UIC8 334 aa26.17■■□□□ 1.78
SHMT1-207ENST00000580002 MAFFQ9ULX9 164 aa26.17■■□□□ 1.78
SHMT1-207ENST00000580002 STAP1Q9ULZ2 295 aa26.17■■□□□ 1.78
SHMT1-207ENST00000580002 REV3LO60673 3130 aa26.16■■□□□ 1.78
SHMT1-207ENST00000580002 SMAD3P84022 425 aaKnown RBP26.16■■□□□ 1.78
SHMT1-207ENST00000580002 TAF12Q16514 161 aa26.16■■□□□ 1.78
SHMT1-207ENST00000580002 STRADAQ7RTN6 431 aa26.16■■□□□ 1.78
SHMT1-207ENST00000580002 MYRFLQ96LU7 910 aa26.16■■□□□ 1.78
SHMT1-207ENST00000580002 ZNF512Q96ME7 567 aaPredicted RBP26.16■■□□□ 1.78
SHMT1-207ENST00000580002 FAM204AQ9H8W3 233 aa26.16■■□□□ 1.78
SHMT1-207ENST00000580002 TLR8Q9NR97 1041 aaKnown RBP26.16■■□□□ 1.78
SHMT1-207ENST00000580002 HCFC1R1Q9NWW0 138 aa26.16■■□□□ 1.78
SHMT1-207ENST00000580002 DOCK6Q96HP0 2047 aa26.15■■□□□ 1.78
SHMT1-207ENST00000580002 TCRBV7S2A1N4TA0A589 114 aa26.15■■□□□ 1.78
SHMT1-207ENST00000580002 PRPSAP2O60256 369 aa26.15■■□□□ 1.78
SHMT1-207ENST00000580002 NRIP1P48552 1158 aa26.15■■□□□ 1.78
SHMT1-207ENST00000580002 VEPH1Q14D04 833 aa26.15■■□□□ 1.78
SHMT1-207ENST00000580002 ZFYVE27Q5T4F4 411 aa26.15■■□□□ 1.78
SHMT1-207ENST00000580002 ADAT2Q7Z6V5 191 aaKnown RBP26.15■■□□□ 1.78
SHMT1-207ENST00000580002 SLITRK1Q96PX8 696 aa26.15■■□□□ 1.78
SHMT1-207ENST00000580002 SNRNP25Q9BV90 132 aaKnown RBP26.15■■□□□ 1.78
SHMT1-207ENST00000580002 LRRC3Q9BY71 257 aa26.15■■□□□ 1.78
SHMT1-207ENST00000580002 IL21Q9HBE4 155 aa26.15■■□□□ 1.78
SHMT1-207ENST00000580002 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP26.15■■□□□ 1.78
SHMT1-207ENST00000580002 HCFC2Q9Y5Z7 792 aa26.15■■□□□ 1.78
SHMT1-207ENST00000580002 SZT2Q5T011 3432 aa26.15■■□□□ 1.78
SHMT1-207ENST00000580002 ZNF840PA6NDX5 716 aa26.15■■□□□ 1.78
SHMT1-207ENST00000580002 IGLV3-25P01717 112 aa26.15■■□□□ 1.78
SHMT1-207ENST00000580002 LRG1P02750 347 aa26.15■■□□□ 1.78
SHMT1-207ENST00000580002 KRT1P04264 644 aa26.15■■□□□ 1.78
SHMT1-207ENST00000580002 RDXP35241 583 aaKnown RBP26.15■■□□□ 1.78
SHMT1-207ENST00000580002 EIF4EBP2Q13542 120 aaPredicted RBP26.15■■□□□ 1.78
SHMT1-207ENST00000580002 HADHQ16836 314 aaKnown RBP26.15■■□□□ 1.78
SHMT1-207ENST00000580002 LRRC38Q5VT99 294 aa26.15■■□□□ 1.78
SHMT1-207ENST00000580002 MFSD7Q6UXD7 560 aa26.15■■□□□ 1.78
SHMT1-207ENST00000580002 CCDC149Q6ZUS6 474 aa26.15■■□□□ 1.78
SHMT1-207ENST00000580002 BEND5Q7L4P6 421 aa26.15■■□□□ 1.78
SHMT1-207ENST00000580002 KATNAL2Q8IYT4 538 aa26.15■■□□□ 1.78
SHMT1-207ENST00000580002 ZDHHC14Q8IZN3 488 aa26.15■■□□□ 1.78
SHMT1-207ENST00000580002 PYROXD2Q8N2H3 581 aa26.15■■□□□ 1.78
SHMT1-207ENST00000580002 VN1R2Q8NFZ6 395 aa26.15■■□□□ 1.78
SHMT1-207ENST00000580002 PBKQ96KB5 322 aa26.15■■□□□ 1.78
SHMT1-207ENST00000580002 CEP295NLQ96MC4 621 aa26.15■■□□□ 1.78
SHMT1-207ENST00000580002 CARD9Q9H257 536 aa26.15■■□□□ 1.78
SHMT1-207ENST00000580002 NR2E1Q9Y466 385 aa26.15■■□□□ 1.78
SHMT1-207ENST00000580002 C3orf70A6NLC5 250 aaPredicted RBP26.14■■□□□ 1.78
SHMT1-207ENST00000580002 EFEMP1Q12805 493 aa26.14■■□□□ 1.78
SHMT1-207ENST00000580002 PDE12Q6L8Q7 609 aaKnown RBP26.14■■□□□ 1.78
SHMT1-207ENST00000580002 RSRC2Q7L4I2 434 aaKnown RBP26.14■■□□□ 1.78
SHMT1-207ENST00000580002 RNF139Q8WU17 664 aa26.14■■□□□ 1.78
SHMT1-207ENST00000580002 TLE6Q9H808 572 aa26.14■■□□□ 1.78
SHMT1-207ENST00000580002 COLQQ9Y215 455 aaPredicted RBP26.14■■□□□ 1.78
SHMT1-207ENST00000580002 SNX10Q9Y5X0 201 aa26.14■■□□□ 1.78
SHMT1-207ENST00000580002 F11P03951 625 aa26.13■■□□□ 1.77
SHMT1-207ENST00000580002 GJA1P17302 382 aa26.13■■□□□ 1.77
SHMT1-207ENST00000580002 ADCY2Q08462 1091 aa26.13■■□□□ 1.77
SHMT1-207ENST00000580002 KCTD19Q17RG1 926 aaPredicted RBP26.13■■□□□ 1.77
SHMT1-207ENST00000580002 PPM1LQ5SGD2 360 aa26.13■■□□□ 1.77
SHMT1-207ENST00000580002 TMC8Q8IU68 726 aa26.13■■□□□ 1.77
SHMT1-207ENST00000580002 RASGEF1CQ8N431 466 aa26.13■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms