RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 USTQ9Y2C2 406 aa9.73□□□□□ -0.85
VPS35-211ENST00000569950 EPN1Q9Y6I3 576 aaPredicted RBP9.73□□□□□ -0.85
VPS35-211ENST00000569950 KIAA1549LQ6ZVL6 1849 aa9.72□□□□□ -0.85
VPS35-211ENST00000569950 MIA3Q5JRA6 1907 aa9.72□□□□□ -0.85
VPS35-211ENST00000569950 C2CD4BA6NLJ0 364 aa9.72□□□□□ -0.85
VPS35-211ENST00000569950 SPDYE4A6NLX3 237 aa9.72□□□□□ -0.85
VPS35-211ENST00000569950 SIGLEC16A6NMB1 481 aa9.72□□□□□ -0.85
VPS35-211ENST00000569950 GOLGA8SH3BPF8 625 aa9.72□□□□□ -0.85
VPS35-211ENST00000569950 ZNF197O14709 1029 aa9.72□□□□□ -0.85
VPS35-211ENST00000569950 ENDOD1O94919 500 aa9.72□□□□□ -0.85
VPS35-211ENST00000569950 FGF19O95750 216 aa9.72□□□□□ -0.85
VPS35-211ENST00000569950 KLKB1P03952 638 aa9.72□□□□□ -0.85
VPS35-211ENST00000569950 CALB1P05937 261 aa9.72□□□□□ -0.85
VPS35-211ENST00000569950 GLI1P08151 1106 aa9.72□□□□□ -0.85
VPS35-211ENST00000569950 TPM1P09493 284 aa9.72□□□□□ -0.85
VPS35-211ENST00000569950 TCF3P15923 654 aa9.72□□□□□ -0.85
VPS35-211ENST00000569950 VIPR2P41587 438 aa9.72□□□□□ -0.85
VPS35-211ENST00000569950 PPP3CCP48454 512 aa9.72□□□□□ -0.85
VPS35-211ENST00000569950 PSEN1P49768 467 aa9.72□□□□□ -0.85
VPS35-211ENST00000569950 GSDMDP57764 484 aa9.72□□□□□ -0.85
VPS35-211ENST00000569950 YWHAZP63104 245 aaKnown RBP9.72□□□□□ -0.85
VPS35-211ENST00000569950 USP4Q13107 963 aa9.72□□□□□ -0.85
VPS35-211ENST00000569950 TCEAL1Q15170 157 aa9.72□□□□□ -0.85
VPS35-211ENST00000569950 CCDC122Q5T0U0 273 aa9.72□□□□□ -0.85
VPS35-211ENST00000569950 HECTD3Q5T447 861 aa9.72□□□□□ -0.85
VPS35-211ENST00000569950 SH3PXD2AQ5TCZ1 1133 aa9.72□□□□□ -0.85
VPS35-211ENST00000569950 TANGO2Q6ICL3 276 aa9.72□□□□□ -0.85
VPS35-211ENST00000569950 OR6B2Q6IFH4 312 aa9.72□□□□□ -0.85
VPS35-211ENST00000569950 PARM1Q6UWI2 310 aa9.72□□□□□ -0.85
VPS35-211ENST00000569950 TOGARAM2Q6ZUX3 1019 aa9.72□□□□□ -0.85
VPS35-211ENST00000569950 CYP4V2Q6ZWL3 525 aaPredicted RBP9.72□□□□□ -0.85
VPS35-211ENST00000569950 TAC4Q86UU9 113 aa9.72□□□□□ -0.85
VPS35-211ENST00000569950 ZDHHC17Q8IUH5 632 aa9.72□□□□□ -0.85
VPS35-211ENST00000569950 ARID3BQ8IVW6 561 aaPredicted RBP9.72□□□□□ -0.85
VPS35-211ENST00000569950 CCDC170Q8IYT3 715 aa9.72□□□□□ -0.85
VPS35-211ENST00000569950 ACRBPQ8NEB7 543 aa9.72□□□□□ -0.85
VPS35-211ENST00000569950 ZSCAN18Q8TBC5 510 aaPredicted RBP9.72□□□□□ -0.85
VPS35-211ENST00000569950 IPO4Q8TEX9 1081 aaKnown RBP9.72□□□□□ -0.85
VPS35-211ENST00000569950 ASIC4Q96FT7 647 aa9.72□□□□□ -0.85
VPS35-211ENST00000569950 SLC39A13Q96H72 371 aa9.72□□□□□ -0.85
VPS35-211ENST00000569950 NOX5Q96PH1 765 aa9.72□□□□□ -0.85
VPS35-211ENST00000569950 DDX23Q9BUQ8 820 aaKnown RBP9.72□□□□□ -0.85
VPS35-211ENST00000569950 PDCL3Q9H2J4 239 aa9.72□□□□□ -0.85
VPS35-211ENST00000569950 SMOC2Q9H3U7 446 aa9.72□□□□□ -0.85
VPS35-211ENST00000569950 TLR8Q9NR97 1041 aaKnown RBP9.72□□□□□ -0.85
VPS35-211ENST00000569950 ABCC13Q9NSE7 274 aa9.72□□□□□ -0.85
VPS35-211ENST00000569950 SEPT11Q9NVA2 429 aaKnown RBP9.72□□□□□ -0.85
VPS35-211ENST00000569950 GDE1Q9NZC3 331 aa9.72□□□□□ -0.85
VPS35-211ENST00000569950 EHD2Q9NZN4 543 aa9.72□□□□□ -0.85
VPS35-211ENST00000569950 ARHGAP26Q9UNA1 814 aa9.72□□□□□ -0.85
VPS35-211ENST00000569950 CEP83Q9Y592 693 aa9.72□□□□□ -0.85
VPS35-211ENST00000569950 CHD5Q8TDI0 1954 aa9.72□□□□□ -0.85
VPS35-211ENST00000569950 ANKRD62A6NC57 917 aa9.71□□□□□ -0.86
VPS35-211ENST00000569950 TMEM191CA6NGB0 347 aa9.71□□□□□ -0.86
VPS35-211ENST00000569950 ARNTLO00327 626 aa9.71□□□□□ -0.86
VPS35-211ENST00000569950 GFRA2O00451 464 aa9.71□□□□□ -0.86
VPS35-211ENST00000569950 MSI1O43347 362 aaKnown RBP9.71□□□□□ -0.86
VPS35-211ENST00000569950 AKR1B10O60218 316 aa9.71□□□□□ -0.86
VPS35-211ENST00000569950 HSF2BPO75031 334 aa9.71□□□□□ -0.86
VPS35-211ENST00000569950 MTA2O94776 668 aa9.71□□□□□ -0.86
VPS35-211ENST00000569950 PFKLP17858 780 aa9.71□□□□□ -0.86
VPS35-211ENST00000569950 HDCP19113 662 aa9.71□□□□□ -0.86
VPS35-211ENST00000569950 SP100P23497 879 aaPredicted RBP9.71□□□□□ -0.86
VPS35-211ENST00000569950 DDX6P26196 483 aaKnown RBP eCLIP9.71□□□□□ -0.86
VPS35-211ENST00000569950 MATKP42679 507 aa9.71□□□□□ -0.86
VPS35-211ENST00000569950 ATXN1P54253 815 aaKnown RBP9.71□□□□□ -0.86
VPS35-211ENST00000569950 ZNF77Q15935 545 aa9.71□□□□□ -0.86
VPS35-211ENST00000569950 TAF12Q16514 161 aa9.71□□□□□ -0.86
VPS35-211ENST00000569950 CCDC14Q49A88 953 aa9.71□□□□□ -0.86
VPS35-211ENST00000569950 EFHC1Q5JVL4 640 aa9.71□□□□□ -0.86
VPS35-211ENST00000569950 FAM102AQ5T9C2 384 aaPredicted RBP9.71□□□□□ -0.86
VPS35-211ENST00000569950 Q6ZNB5 142 aa9.71□□□□□ -0.86
VPS35-211ENST00000569950 ZDHHC14Q8IZN3 488 aa9.71□□□□□ -0.86
VPS35-211ENST00000569950 ADAM32Q8TC27 787 aa9.71□□□□□ -0.86
VPS35-211ENST00000569950 ATXN2LQ8WWM7 1075 aaKnown RBP9.71□□□□□ -0.86
VPS35-211ENST00000569950 RSAD2Q8WXG1 361 aa9.71□□□□□ -0.86
VPS35-211ENST00000569950 MRPS31Q92665 395 aaKnown RBP9.71□□□□□ -0.86
VPS35-211ENST00000569950 CENPIQ92674 756 aaPredicted RBP9.71□□□□□ -0.86
VPS35-211ENST00000569950 SMARCD2Q92925 531 aa9.71□□□□□ -0.86
VPS35-211ENST00000569950 ZNF653Q96CK0 615 aa9.71□□□□□ -0.86
VPS35-211ENST00000569950 FCRL2Q96LA5 508 aaPredicted RBP9.71□□□□□ -0.86
VPS35-211ENST00000569950 CCDC42Q96M95 316 aa9.71□□□□□ -0.86
VPS35-211ENST00000569950 ASB2Q96Q27 587 aa9.71□□□□□ -0.86
VPS35-211ENST00000569950 DESI2Q9BSY9 194 aa9.71□□□□□ -0.86
VPS35-211ENST00000569950 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP9.71□□□□□ -0.86
VPS35-211ENST00000569950 LACRTQ9GZZ8 138 aa9.71□□□□□ -0.86
VPS35-211ENST00000569950 POPDC2Q9HBU9 364 aa9.71□□□□□ -0.86
VPS35-211ENST00000569950 GKN1Q9NS71 199 aa9.71□□□□□ -0.86
VPS35-211ENST00000569950 ZNHIT6Q9NWK9 470 aaKnown RBP9.71□□□□□ -0.86
VPS35-211ENST00000569950 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.71□□□□□ -0.86
VPS35-211ENST00000569950 WDR35Q9P2L0 1181 aa9.71□□□□□ -0.86
VPS35-211ENST00000569950 CNOT8Q9UFF9 292 aaKnown RBP9.71□□□□□ -0.86
VPS35-211ENST00000569950 SFMBT1Q9UHJ3 866 aa9.71□□□□□ -0.86
VPS35-211ENST00000569950 SSUH2Q9Y2M2 353 aa9.71□□□□□ -0.86
VPS35-211ENST00000569950 TECTAO75443 2155 aa9.7□□□□□ -0.86
VPS35-211ENST00000569950 TRAV19A0A0A6YYK7 116 aa9.7□□□□□ -0.86
VPS35-211ENST00000569950 SHISA7A6NL88 538 aa9.7□□□□□ -0.86
VPS35-211ENST00000569950 DPYSL4O14531 572 aa9.7□□□□□ -0.86
VPS35-211ENST00000569950 PJA2O43164 708 aa9.7□□□□□ -0.86
VPS35-211ENST00000569950 IRAK2O43187 625 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms