RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, human

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-238	ENST00000569430	MOGS	Q13724	837 aa		11.78	□□□□□ -0.52
CLN3-238	ENST00000569430	VWA5B1	Q5TIE3	1220 aa		11.78	□□□□□ -0.52
CLN3-238	ENST00000569430	MKL1	Q969V6	931 aa		11.78	□□□□□ -0.52
CLN3-238	ENST00000569430	BORCS6	Q96GS4	357 aa		11.78	□□□□□ -0.52
CLN3-238	ENST00000569430	APOL2	Q9BQE5	337 aa		11.78	□□□□□ -0.52
CLN3-238	ENST00000569430	EBF4	Q9BQW3	602 aa		11.78	□□□□□ -0.52
CLN3-238	ENST00000569430	SPATA16	Q9BXB7	569 aa		11.78	□□□□□ -0.52
CLN3-238	ENST00000569430	ING2	Q9H160	280 aa		11.78	□□□□□ -0.52
CLN3-238	ENST00000569430	PNPO	Q9NVS9	261 aa		11.78	□□□□□ -0.52
CLN3-238	ENST00000569430	IGLV3-22	A0A075B6J6	115 aa		11.78	□□□□□ -0.52
CLN3-238	ENST00000569430	C15orf38-AP3S2	A0A0A6YYH1	394 aa		11.78	□□□□□ -0.52
CLN3-238	ENST00000569430	CSPG5	O95196	566 aa		11.78	□□□□□ -0.52
CLN3-238	ENST00000569430	RARB	P10826	455 aa		11.78	□□□□□ -0.52
CLN3-238	ENST00000569430	THRA	P10827	490 aa		11.78	□□□□□ -0.52
CLN3-238	ENST00000569430	UQCRB	P14927	111 aa		11.78	□□□□□ -0.52
CLN3-238	ENST00000569430	MAPK10	P53779	464 aa		11.78	□□□□□ -0.52
CLN3-238	ENST00000569430	NME3	Q13232	169 aa		11.78	□□□□□ -0.52
CLN3-238	ENST00000569430	ADGRD1	Q6QNK2	874 aa		11.78	□□□□□ -0.52
CLN3-238	ENST00000569430	ARPIN	Q7Z6K5	226 aa		11.78	□□□□□ -0.52
CLN3-238	ENST00000569430	CD101	Q93033	1021 aa		11.78	□□□□□ -0.52
CLN3-238	ENST00000569430	ZDHHC15	Q96MV8	337 aa		11.78	□□□□□ -0.52
CLN3-238	ENST00000569430	P2RX7	Q99572	595 aa	Known RBP	11.78	□□□□□ -0.52
CLN3-238	ENST00000569430	GCOM2	Q9BZD3	368 aa	Predicted RBP	11.78	□□□□□ -0.52
CLN3-238	ENST00000569430	ILKAP	Q9H0C8	392 aa	Predicted RBP	11.78	□□□□□ -0.52
CLN3-238	ENST00000569430	S100A14	Q9HCY8	104 aa		11.78	□□□□□ -0.52
CLN3-238	ENST00000569430	TBC1D23	Q9NUY8	699 aa		11.78	□□□□□ -0.52
CLN3-238	ENST00000569430	SSX2IP	Q9Y2D8	614 aa		11.78	□□□□□ -0.52
CLN3-238	ENST00000569430		V9GYQ6	96 aa		11.78	□□□□□ -0.52
CLN3-238	ENST00000569430	PRKCB	P05771	671 aa		11.78	□□□□□ -0.52
CLN3-238	ENST00000569430	MAPT	P10636	758 aa	Known RBP	11.78	□□□□□ -0.52
CLN3-238	ENST00000569430	RPL5	P46777	297 aa	Known RBP	11.78	□□□□□ -0.52
CLN3-238	ENST00000569430	USP10	Q14694	798 aa	Known RBP	11.78	□□□□□ -0.52
CLN3-238	ENST00000569430	STRIP1	Q5VSL9	837 aa		11.78	□□□□□ -0.52
CLN3-238	ENST00000569430	RHBDF2	Q6PJF5	856 aa		11.78	□□□□□ -0.52
CLN3-238	ENST00000569430	TSHZ1	Q6ZSZ6	1077 aa		11.78	□□□□□ -0.52
CLN3-238	ENST00000569430	ZC3H3	Q8IXZ2	948 aa	Known RBP	11.78	□□□□□ -0.52
CLN3-238	ENST00000569430	BANP	Q8N9N5	519 aa		11.78	□□□□□ -0.52
CLN3-238	ENST00000569430	NAT14	Q8WUY8	206 aa		11.78	□□□□□ -0.52
CLN3-238	ENST00000569430	PAIP1	Q9H074	479 aa	Known RBP	11.78	□□□□□ -0.52
CLN3-238	ENST00000569430	NRDE2	Q9H7Z3	1164 aa		11.78	□□□□□ -0.52
CLN3-238	ENST00000569430	TCF7L2	Q9NQB0	619 aa		11.78	□□□□□ -0.52
CLN3-238	ENST00000569430	WDR27	A2RRH5	827 aa		11.77	□□□□□ -0.52
CLN3-238	ENST00000569430	KLHL33	A6NCF5	533 aa		11.77	□□□□□ -0.52
CLN3-238	ENST00000569430	TMEM191C	A6NGB0	347 aa		11.77	□□□□□ -0.52
CLN3-238	ENST00000569430	TNFAIP8	O95379	198 aa		11.77	□□□□□ -0.52
CLN3-238	ENST00000569430	CD48	P09326	243 aa		11.77	□□□□□ -0.52
CLN3-238	ENST00000569430	DCTN2	Q13561	401 aa	Known RBP	11.77	□□□□□ -0.52
CLN3-238	ENST00000569430	C15orf59	Q2T9L4	293 aa	Predicted RBP	11.77	□□□□□ -0.52
CLN3-238	ENST00000569430	CYP2R1	Q6VVX0	501 aa		11.77	□□□□□ -0.52
CLN3-238	ENST00000569430	KY	Q8NBH2	561 aa		11.77	□□□□□ -0.52
CLN3-238	ENST00000569430	NETO2	Q8NC67	525 aa		11.77	□□□□□ -0.52
CLN3-238	ENST00000569430	RNF169	Q8NCN4	708 aa		11.77	□□□□□ -0.52
CLN3-238	ENST00000569430	JOSD2	Q8TAC2	188 aa		11.77	□□□□□ -0.52
CLN3-238	ENST00000569430	SYTL5	Q8TDW5	730 aa	Predicted RBP	11.77	□□□□□ -0.52
CLN3-238	ENST00000569430	MASTL	Q96GX5	879 aa		11.77	□□□□□ -0.52
CLN3-238	ENST00000569430	TMEM79	Q9BSE2	394 aa		11.77	□□□□□ -0.52
CLN3-238	ENST00000569430	CCDC90B	Q9GZT6	254 aa		11.77	□□□□□ -0.52
CLN3-238	ENST00000569430	PREB	Q9HCU5	417 aa		11.77	□□□□□ -0.52
CLN3-238	ENST00000569430	SNED1	Q8TER0	1413 aa		11.77	□□□□□ -0.53
CLN3-238	ENST00000569430	TCRBV7S3A2	A0A539	114 aa		11.77	□□□□□ -0.53
CLN3-238	ENST00000569430	APOC4-APOC2	K7ER74	178 aa		11.77	□□□□□ -0.53
CLN3-238	ENST00000569430	EDIL3	O43854	480 aa		11.77	□□□□□ -0.53
CLN3-238	ENST00000569430	APOC2	P02655	101 aa		11.77	□□□□□ -0.53
CLN3-238	ENST00000569430	SIX1	Q15475	284 aa	Predicted RBP	11.77	□□□□□ -0.53
CLN3-238	ENST00000569430	ZACN	Q401N2	412 aa		11.77	□□□□□ -0.53
CLN3-238	ENST00000569430	MSS51	Q4VC12	460 aa		11.77	□□□□□ -0.53
CLN3-238	ENST00000569430	DENND1B	Q6P3S1	775 aa		11.77	□□□□□ -0.53
CLN3-238	ENST00000569430	TTC33	Q6PID6	262 aa	Predicted RBP	11.77	□□□□□ -0.53
CLN3-238	ENST00000569430	TDRP	Q86YL5	185 aa		11.77	□□□□□ -0.53
CLN3-238	ENST00000569430	TNS4	Q8IZW8	715 aa		11.77	□□□□□ -0.53
CLN3-238	ENST00000569430	DGCR14	Q96DF8	476 aa	Known RBP	11.77	□□□□□ -0.53
CLN3-238	ENST00000569430	MARK4	Q96L34	752 aa		11.77	□□□□□ -0.53
CLN3-238	ENST00000569430	PHF12	Q96QT6	1004 aa		11.77	□□□□□ -0.53
CLN3-238	ENST00000569430	FAM198A	Q9UFP1	575 aa		11.77	□□□□□ -0.53
CLN3-238	ENST00000569430	LNPEP	Q9UIQ6	1025 aa		11.77	□□□□□ -0.53
CLN3-238	ENST00000569430	SHANK3	Q9BYB0	1731 aa		11.77	□□□□□ -0.53
CLN3-238	ENST00000569430	SERPINE1	P05121	402 aa		11.77	□□□□□ -0.53
CLN3-238	ENST00000569430	IVD	P26440	423 aa		11.77	□□□□□ -0.53
CLN3-238	ENST00000569430	MAP4	P27816	1152 aa	Known RBP	11.77	□□□□□ -0.53
CLN3-238	ENST00000569430	ADSS	P30520	456 aa		11.77	□□□□□ -0.53
CLN3-238	ENST00000569430	SPR	P35270	261 aa	Predicted RBP	11.77	□□□□□ -0.53
CLN3-238	ENST00000569430	AVPR1A	P37288	418 aa		11.77	□□□□□ -0.53
CLN3-238	ENST00000569430	MLH1	P40692	756 aa		11.77	□□□□□ -0.53
CLN3-238	ENST00000569430	ENDOV	Q8N8Q3	282 aa	Known RBP	11.77	□□□□□ -0.53
CLN3-238	ENST00000569430	LMO3	Q8TAP4	145 aa		11.77	□□□□□ -0.53
CLN3-238	ENST00000569430	DDI1	Q8WTU0	396 aa		11.77	□□□□□ -0.53
CLN3-238	ENST00000569430	SLCO2A1	Q92959	643 aa		11.77	□□□□□ -0.53
CLN3-238	ENST00000569430	LENG1	Q96BZ8	264 aa	Predicted RBP	11.77	□□□□□ -0.53
CLN3-238	ENST00000569430	RPAP3	Q9H6T3	665 aa	Predicted RBP	11.77	□□□□□ -0.53
CLN3-238	ENST00000569430	LRRC4	Q9HBW1	653 aa		11.77	□□□□□ -0.53
CLN3-238	ENST00000569430	TMX2	Q9Y320	296 aa		11.77	□□□□□ -0.53
CLN3-238	ENST00000569430	SMIM31	A0A1B0GVY4	71 aa		11.76	□□□□□ -0.53
CLN3-238	ENST00000569430	GOLGA8T	H3BQL2	631 aa		11.76	□□□□□ -0.53
CLN3-238	ENST00000569430	TMEM63A	O94886	807 aa		11.76	□□□□□ -0.53
CLN3-238	ENST00000569430	POLB	P06746	335 aa		11.76	□□□□□ -0.53
CLN3-238	ENST00000569430	GPX6	P59796	221 aa		11.76	□□□□□ -0.53
CLN3-238	ENST00000569430	KRT72	Q14CN4	511 aa		11.76	□□□□□ -0.53
CLN3-238	ENST00000569430	NFIL3	Q16649	462 aa		11.76	□□□□□ -0.53
CLN3-238	ENST00000569430	PLEKHG4	Q58EX7	1191 aa		11.76	□□□□□ -0.53
CLN3-238	ENST00000569430	MON1B	Q7L1V2	547 aa		11.76	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms