RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 ITGA9Q13797 1035 aa15□□□□□ -0.01
VPS35-210ENST00000568784 CWF19L1Q69YN2 538 aaKnown RBP15□□□□□ -0.01
VPS35-210ENST00000568784 DNAAF3Q8N9W5 541 aa15□□□□□ -0.01
VPS35-210ENST00000568784 GCNAQ96QF7 691 aa15□□□□□ -0.01
VPS35-210ENST00000568784 ECSITQ9BQ95 431 aa15□□□□□ -0.01
VPS35-210ENST00000568784 UNKQ9C0B0 810 aaKnown RBP15□□□□□ -0.01
VPS35-210ENST00000568784 EBF3Q9H4W6 596 aa15□□□□□ -0.01
VPS35-210ENST00000568784 PNPOQ9NVS9 261 aa15□□□□□ -0.01
VPS35-210ENST00000568784 HESX1Q9UBX0 185 aa15□□□□□ -0.01
VPS35-210ENST00000568784 SOX13Q9UN79 622 aa15□□□□□ -0.01
VPS35-210ENST00000568784 AKT3Q9Y243 479 aa15□□□□□ -0.01
VPS35-210ENST00000568784 CNTNAP2Q9UHC6 1331 aa14.99□□□□□ -0.01
VPS35-210ENST00000568784 ATAD5Q96QE3 1844 aa14.99□□□□□ -0.01
VPS35-210ENST00000568784 NPTXRO95502 500 aa14.99□□□□□ -0.01
VPS35-210ENST00000568784 APOEP02649 317 aa14.99□□□□□ -0.01
VPS35-210ENST00000568784 FESP07332 822 aa14.99□□□□□ -0.01
VPS35-210ENST00000568784 OCRLQ01968 901 aa14.99□□□□□ -0.01
VPS35-210ENST00000568784 LAMTOR4Q0VGL1 99 aa14.99□□□□□ -0.01
VPS35-210ENST00000568784 EFHC1Q5JVL4 640 aa14.99□□□□□ -0.01
VPS35-210ENST00000568784 STYK1Q6J9G0 422 aa14.99□□□□□ -0.01
VPS35-210ENST00000568784 UNC5AQ6ZN44 842 aa14.99□□□□□ -0.01
VPS35-210ENST00000568784 RAPH1Q70E73 1250 aa14.99□□□□□ -0.01
VPS35-210ENST00000568784 GALNT4Q8N4A0 578 aa14.99□□□□□ -0.01
VPS35-210ENST00000568784 TRAFD1O14545 582 aaPredicted RBP14.99□□□□□ -0.01
VPS35-210ENST00000568784 MAFGO15525 162 aa14.99□□□□□ -0.01
VPS35-210ENST00000568784 SERPINB5P36952 375 aa14.99□□□□□ -0.01
VPS35-210ENST00000568784 SLC18A1P54219 525 aa14.99□□□□□ -0.01
VPS35-210ENST00000568784 XYLT1Q86Y38 959 aa14.99□□□□□ -0.01
VPS35-210ENST00000568784 PGLYRP2Q96PD5 576 aa14.99□□□□□ -0.01
VPS35-210ENST00000568784 DEFB129Q9H1M3 183 aa14.99□□□□□ -0.01
VPS35-210ENST00000568784 CYLDQ9NQC7 956 aa14.99□□□□□ -0.01
VPS35-210ENST00000568784 ETNK2Q9NVF9 386 aa14.99□□□□□ -0.01
VPS35-210ENST00000568784 CLIC5Q9NZA1 410 aa14.99□□□□□ -0.01
VPS35-210ENST00000568784 AK5Q9Y6K8 562 aa14.99□□□□□ -0.01
VPS35-210ENST00000568784 USP12O75317 370 aa14.99□□□□□ -0.01
VPS35-210ENST00000568784 LCP1P13796 627 aa14.99□□□□□ -0.01
VPS35-210ENST00000568784 ADORA2BP29275 332 aa14.99□□□□□ -0.01
VPS35-210ENST00000568784 TMEM132BQ14DG7 1078 aa14.99□□□□□ -0.01
VPS35-210ENST00000568784 TNS4Q8IZW8 715 aa14.99□□□□□ -0.01
VPS35-210ENST00000568784 PEBP4Q96S96 227 aa14.99□□□□□ -0.01
VPS35-210ENST00000568784 MAGEB5Q9BZ81 275 aa14.99□□□□□ -0.01
VPS35-210ENST00000568784 VCX3BQ9H321 246 aa14.99□□□□□ -0.01
VPS35-210ENST00000568784 PDP2Q9P2J9 529 aa14.99□□□□□ -0.01
VPS35-210ENST00000568784 STRCQ7RTU9 1775 aa14.99□□□□□ -0.01
VPS35-210ENST00000568784 ITM2AO43736 263 aa14.98□□□□□ -0.01
VPS35-210ENST00000568784 CREB3O43889 395 aa14.98□□□□□ -0.01
VPS35-210ENST00000568784 PLA2G6O60733 806 aa14.98□□□□□ -0.01
VPS35-210ENST00000568784 ATXN1P54253 815 aaKnown RBP14.98□□□□□ -0.01
VPS35-210ENST00000568784 USP4Q13107 963 aa14.98□□□□□ -0.01
VPS35-210ENST00000568784 LBRQ14739 615 aaKnown RBP14.98□□□□□ -0.01
VPS35-210ENST00000568784 PPM1JQ5JR12 505 aa14.98□□□□□ -0.01
VPS35-210ENST00000568784 ACOT1Q86TX2 421 aa14.98□□□□□ -0.01
VPS35-210ENST00000568784 CPB2Q96IY4 423 aa14.98□□□□□ -0.01
VPS35-210ENST00000568784 SCYL1Q96KG9 808 aa14.98□□□□□ -0.01
VPS35-210ENST00000568784 B3GNT5Q9BYG0 378 aa14.98□□□□□ -0.01
VPS35-210ENST00000568784 VCX3AQ9NNX9 186 aa14.98□□□□□ -0.01
VPS35-210ENST00000568784 HBS1LQ9Y450 684 aaKnown RBP14.98□□□□□ -0.01
VPS35-210ENST00000568784 A8MXQ7 604 aa14.98□□□□□ -0.01
VPS35-210ENST00000568784 GSTA2P09210 222 aa14.98□□□□□ -0.01
VPS35-210ENST00000568784 GBE1Q04446 702 aa14.98□□□□□ -0.01
VPS35-210ENST00000568784 CDC16Q13042 620 aa14.98□□□□□ -0.01
VPS35-210ENST00000568784 LAMB3Q13751 1172 aa14.98□□□□□ -0.01
VPS35-210ENST00000568784 CA9Q16790 459 aa14.98□□□□□ -0.01
VPS35-210ENST00000568784 HPS6Q86YV9 775 aa14.98□□□□□ -0.01
VPS35-210ENST00000568784 OR6B3Q8NGW1 331 aa14.98□□□□□ -0.01
VPS35-210ENST00000568784 GDPD5Q8WTR4 605 aa14.98□□□□□ -0.01
VPS35-210ENST00000568784 WDR35Q9P2L0 1181 aa14.98□□□□□ -0.01
VPS35-210ENST00000568784 TM7SF2O76062 418 aa14.98□□□□□ -0.01
VPS35-210ENST00000568784 MLH1P40692 756 aa14.98□□□□□ -0.01
VPS35-210ENST00000568784 SLC1A6P48664 564 aa14.98□□□□□ -0.01
VPS35-210ENST00000568784 BACE1P56817 501 aa14.98□□□□□ -0.01
VPS35-210ENST00000568784 SPATA24Q86W54 205 aa14.98□□□□□ -0.01
VPS35-210ENST00000568784 ZNF280CQ8ND82 737 aa14.98□□□□□ -0.01
VPS35-210ENST00000568784 CNPY3Q9BT09 278 aa14.98□□□□□ -0.01
VPS35-210ENST00000568784 ZNF358Q9NW07 568 aa14.98□□□□□ -0.01
VPS35-210ENST00000568784 TSPAN16Q9UKR8 245 aa14.98□□□□□ -0.01
VPS35-210ENST00000568784 SNX9Q9Y5X1 595 aa14.98□□□□□ -0.01
VPS35-210ENST00000568784 SPAG6O75602 509 aa14.97□□□□□ -0.01
VPS35-210ENST00000568784 PDGFRBP09619 1106 aa14.97□□□□□ -0.01
VPS35-210ENST00000568784 P4HA1P13674 534 aa14.97□□□□□ -0.01
VPS35-210ENST00000568784 RAG1P15918 1043 aa14.97□□□□□ -0.01
VPS35-210ENST00000568784 NDST1P52848 882 aa14.97□□□□□ -0.01
VPS35-210ENST00000568784 RTP1P59025 263 aa14.97□□□□□ -0.01
VPS35-210ENST00000568784 LRRC23Q53EV4 343 aaPredicted RBP14.97□□□□□ -0.01
VPS35-210ENST00000568784 IYDQ6PHW0 289 aa14.97□□□□□ -0.01
VPS35-210ENST00000568784 MFN1Q8IWA4 741 aa14.97□□□□□ -0.01
VPS35-210ENST00000568784 TMEM176AQ96HP8 235 aa14.97□□□□□ -0.01
VPS35-210ENST00000568784 HPDLQ96IR7 371 aa14.97□□□□□ -0.01
VPS35-210ENST00000568784 RNF157Q96PX1 679 aa14.97□□□□□ -0.01
VPS35-210ENST00000568784 APOL2Q9BQE5 337 aa14.97□□□□□ -0.01
VPS35-210ENST00000568784 INPP5FQ9Y2H2 1132 aa14.97□□□□□ -0.01
VPS35-210ENST00000568784 GOLGA8TH3BQL2 631 aa14.97□□□□□ -0.01
VPS35-210ENST00000568784 ATP9BO43861 1147 aa14.97□□□□□ -0.01
VPS35-210ENST00000568784 PEX2P28328 305 aa14.97□□□□□ -0.01
VPS35-210ENST00000568784 ABCD1P33897 745 aa14.97□□□□□ -0.01
VPS35-210ENST00000568784 NOMO1Q15155 1222 aa14.97□□□□□ -0.01
VPS35-210ENST00000568784 GOLGA7BQ2TAP0 167 aa14.97□□□□□ -0.01
VPS35-210ENST00000568784 FAM183BPQ6ZVS7 135 aa14.97□□□□□ -0.01
VPS35-210ENST00000568784 CMC1Q7Z7K0 106 aa14.97□□□□□ -0.01
VPS35-210ENST00000568784 CHSY1Q86X52 802 aa14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms